Wall clock time and date at job start Wed Apr 1 2020 04:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46965 * 2 1 4 4 C 1.52999 * 109.46645 * 240.00521 * 2 1 3 5 5 C 1.53008 * 109.46593 * 175.00100 * 4 2 1 6 6 C 1.53002 * 109.47094 * 179.97438 * 5 4 2 7 7 N 1.46495 * 109.47350 * 179.97438 * 6 5 4 8 8 C 1.36935 * 120.00308 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00024 * 0.02562 * 8 7 6 10 10 C 1.38810 * 120.00033 * 179.97438 * 8 7 6 11 11 N 1.31619 * 120.00347 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99869 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47141 * 60.00469 * 12 10 8 14 14 H 1.48508 * 109.47097 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47351 * 300.00297 * 12 10 8 16 16 N 1.46499 * 109.47136 * 120.00350 * 2 1 3 17 17 C 1.34777 * 119.99665 * 275.27771 * 16 2 1 18 18 O 1.21653 * 120.00225 * 359.72103 * 17 16 2 19 19 C 1.47016 * 119.99795 * 179.72421 * 17 16 2 20 20 C 1.41372 * 126.48481 * 0.02562 * 19 17 16 21 21 N 1.30358 * 108.15956 * 180.02562 * 20 19 17 22 22 N 1.39900 * 109.15072 * 359.97438 * 21 20 19 23 23 C 1.46497 * 125.76105 * 179.97438 * 22 21 20 24 24 C 1.34748 * 108.48357 * 359.73054 * 22 21 20 25 25 N 1.38990 * 126.40976 * 180.29701 * 24 22 21 26 26 C 1.36730 * 125.68440 * 134.84310 * 25 24 22 27 27 C 1.34787 * 108.18233 * 179.86726 * 26 25 24 28 28 C 1.41019 * 107.50544 * 0.39106 * 27 26 25 29 29 C 1.34779 * 107.49978 * 359.75609 * 28 27 26 30 30 H 1.09005 * 109.47368 * 59.99853 * 1 2 3 31 31 H 1.09006 * 109.47500 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47488 * 299.99925 * 1 2 3 33 33 H 1.08998 * 109.47257 * 294.99561 * 4 2 1 34 34 H 1.08993 * 109.47436 * 55.00179 * 4 2 1 35 35 H 1.08998 * 109.46879 * 299.99693 * 5 4 2 36 36 H 1.09001 * 109.47112 * 59.99648 * 5 4 2 37 37 H 1.09003 * 109.47046 * 300.00184 * 6 5 4 38 38 H 1.09002 * 109.46848 * 59.99557 * 6 5 4 39 39 H 0.97010 * 119.99841 * 0.02562 * 7 6 5 40 40 H 0.96999 * 120.00653 * 179.97438 * 11 10 8 41 41 H 0.97001 * 119.99790 * 94.99484 * 16 2 1 42 42 H 1.08002 * 125.91863 * 0.02575 * 20 19 17 43 43 H 1.09000 * 109.47133 * 89.97379 * 23 22 21 44 44 H 1.08991 * 109.47662 * 209.97830 * 23 22 21 45 45 H 1.09000 * 109.47077 * 329.98223 * 23 22 21 46 46 H 1.08000 * 125.91360 * 359.97438 * 26 25 24 47 47 H 1.08004 * 126.24591 * 180.18768 * 27 26 25 48 48 H 1.08005 * 126.24933 * 179.77870 * 28 27 26 49 49 H 1.08006 * 125.90410 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 6 4.0748 -1.3349 -2.5627 7 7 5.5348 -1.2310 -2.6248 8 6 6.2187 -1.8059 -3.6625 9 1 5.6817 -2.3356 -4.4355 10 6 7.6020 -1.7070 -3.7216 11 7 8.2564 -1.0611 -2.7798 12 14 8.5348 -2.4907 -5.1376 13 1 8.0777 -1.8975 -6.4199 14 1 9.9895 -2.2446 -4.9685 15 1 8.2788 -3.9534 -5.1497 16 7 2.0183 -0.6907 1.1961 17 6 2.1417 -0.0197 2.3585 18 8 1.8524 1.1607 2.4132 19 6 2.6260 -0.7143 3.5603 20 6 2.9994 -2.0747 3.6519 21 7 3.3717 -2.3122 4.8784 22 7 3.2598 -1.1361 5.6278 23 6 3.5833 -0.9928 7.0494 24 6 2.8094 -0.1561 4.8201 25 7 2.5697 1.1648 5.1802 26 6 2.9483 2.2675 4.4657 27 6 2.5357 3.3632 5.1334 28 6 1.8867 2.9258 6.3065 29 6 1.9215 1.5785 6.3106 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.7515 -1.7714 -1.2057 34 1 1.6053 -0.2616 -2.1370 35 1 3.8531 0.4371 -1.3573 36 1 3.9994 -1.0727 -0.4260 37 1 3.7864 -2.3851 -2.5187 38 1 3.6402 -0.8757 -3.4506 39 1 6.0172 -0.7556 -1.9303 40 1 9.2231 -0.9923 -2.8208 41 1 2.2489 -1.6319 1.1525 42 1 2.9796 -2.7928 2.8454 43 1 4.6303 -0.7096 7.1570 44 1 2.9513 -0.2218 7.4900 45 1 3.4091 -1.9405 7.5590 46 1 3.4835 2.2615 3.5277 47 1 2.6791 4.3891 4.8276 48 1 1.4426 3.5555 7.0634 49 1 1.5089 0.9366 7.0749 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330884070.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:51 Heat of formation + Delta-G solvation = 84.749101 kcal Electronic energy + Delta-G solvation = -29876.590023 eV Core-core repulsion = 25841.022469 eV Total energy + Delta-G solvation = -4035.567554 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.25389 -41.57558 -40.48206 -37.87678 -36.46399 -34.96491 -34.10417 -33.78745 -32.51279 -30.92025 -29.97633 -29.69765 -28.15632 -27.20217 -24.96459 -24.25182 -23.08982 -22.53910 -22.14973 -21.57321 -21.10704 -20.61626 -19.52259 -19.10352 -18.13411 -17.29851 -17.01073 -16.64335 -16.37731 -15.88235 -15.82397 -15.56451 -15.33464 -15.26789 -15.20734 -15.05616 -14.70120 -14.42716 -14.22221 -13.86641 -13.74343 -13.60098 -13.41501 -13.23342 -13.14643 -13.03281 -12.96513 -12.73064 -12.36371 -12.28467 -12.25421 -12.05870 -11.82971 -11.67749 -11.46347 -11.09416 -10.92929 -10.90878 -10.24752 -9.98059 -9.45857 -9.20041 -8.99469 -7.94910 -5.24127 -0.12830 0.74121 0.96506 1.33099 1.46957 1.50570 1.56690 1.88026 2.04417 2.29578 2.34062 2.56474 3.23362 3.38617 3.66415 3.73419 3.76348 3.87502 4.02284 4.14849 4.15394 4.22836 4.29156 4.32542 4.35336 4.45927 4.48749 4.60055 4.62201 4.63479 4.73090 4.86098 4.90386 4.96699 5.04327 5.10646 5.17627 5.21507 5.27672 5.34133 5.35072 5.41619 5.45775 5.52493 5.64189 5.87387 6.03089 6.27427 6.27584 6.34211 6.62084 7.29603 7.32918 8.11010 8.32605 9.28715 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.011792 B = 0.002323 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.015291 B =12052.547701 C =12798.663461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.149 3.851 3 H 0.065 0.935 4 C -0.108 4.108 5 C -0.112 4.112 6 C 0.150 3.850 7 N -0.751 5.751 8 C -0.246 4.246 9 H 0.077 0.923 10 C -0.080 4.080 11 N -0.972 5.972 12 Si 0.976 3.024 13 H -0.277 1.277 14 H -0.296 1.296 15 H -0.275 1.275 16 N -0.706 5.706 17 C 0.589 3.411 18 O -0.572 6.572 19 C -0.306 4.306 20 C 0.102 3.898 21 N -0.289 5.289 22 N -0.359 5.359 23 C 0.078 3.922 24 C 0.347 3.653 25 N -0.396 5.396 26 C 0.034 3.966 27 C -0.209 4.209 28 C -0.175 4.175 29 C -0.037 4.037 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.040 0.960 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.044 0.956 36 H 0.058 0.942 37 H 0.027 0.973 38 H 0.019 0.981 39 H 0.371 0.629 40 H 0.251 0.749 41 H 0.410 0.590 42 H 0.228 0.772 43 H 0.089 0.911 44 H 0.108 0.892 45 H 0.118 0.882 46 H 0.149 0.851 47 H 0.153 0.847 48 H 0.169 0.831 49 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.510 1.138 21.983 28.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.045 3.955 3 H 0.083 0.917 4 C -0.147 4.147 5 C -0.150 4.150 6 C 0.024 3.976 7 N -0.393 5.393 8 C -0.378 4.378 9 H 0.095 0.905 10 C -0.272 4.272 11 N -0.623 5.623 12 Si 0.804 3.196 13 H -0.203 1.203 14 H -0.222 1.222 15 H -0.201 1.201 16 N -0.357 5.357 17 C 0.377 3.623 18 O -0.453 6.453 19 C -0.323 4.323 20 C -0.085 4.085 21 N -0.109 5.109 22 N -0.141 5.141 23 C -0.061 4.061 24 C 0.122 3.878 25 N -0.075 5.075 26 C -0.092 4.092 27 C -0.233 4.233 28 C -0.199 4.199 29 C -0.161 4.161 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.045 0.955 38 H 0.037 0.963 39 H 0.202 0.798 40 H 0.060 0.940 41 H 0.247 0.753 42 H 0.245 0.755 43 H 0.108 0.892 44 H 0.127 0.873 45 H 0.137 0.863 46 H 0.166 0.834 47 H 0.171 0.829 48 H 0.186 0.814 49 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -18.196 0.683 22.753 29.142 hybrid contribution 0.997 0.194 -1.144 1.530 sum -17.199 0.877 21.609 27.632 Atomic orbital electron populations 1.22085 0.93997 1.02925 1.02117 1.20932 0.94545 0.96535 0.83510 0.91662 1.21749 0.93491 1.02339 0.97092 1.21587 0.96515 0.99626 0.97290 1.20868 0.83057 0.97478 0.96233 1.42660 1.02624 1.65858 1.28185 1.19646 0.90010 1.26326 1.01835 0.90466 1.25627 0.97571 1.02493 1.01462 1.69823 1.07070 1.48851 1.36572 0.85181 0.77012 0.78441 0.78958 1.20319 1.22239 1.20111 1.45751 1.66879 1.14498 1.08578 1.17175 0.76750 0.85704 0.82655 1.90803 1.52578 1.16459 1.85410 1.20016 1.22186 0.95977 0.94121 1.24463 0.94110 0.94326 0.95579 1.77271 1.24939 1.03479 1.05249 1.48934 1.48374 1.05538 1.11243 1.22532 1.03725 1.06595 0.73263 1.18087 0.96743 0.82085 0.90880 1.40654 1.45648 1.00738 1.20508 1.21919 1.04879 0.84188 0.98208 1.21268 1.06006 0.98328 0.97723 1.21324 1.04978 0.93643 0.99952 1.22397 1.05281 0.96714 0.91659 0.90363 0.90920 0.94101 0.89184 0.89130 0.93714 0.92316 0.95497 0.96320 0.79755 0.94047 0.75325 0.75543 0.89212 0.87346 0.86327 0.83391 0.82906 0.81397 0.79266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.48 71.98 0.68 -2.13 16 2 C 0.15 3.23 2.57 44.99 0.12 3.34 16 3 H 0.07 1.77 7.58 -2.39 -0.02 1.75 16 4 C -0.11 -2.28 4.75 30.60 0.15 -2.13 16 5 C -0.11 -3.42 5.22 30.60 0.16 -3.26 16 6 C 0.15 5.82 6.26 86.38 0.54 6.36 16 7 N -0.75 -38.98 5.60 -343.46 -1.92 -40.90 16 8 C -0.25 -13.98 9.99 84.03 0.84 -13.14 16 9 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 10 C -0.08 -4.65 5.50 84.86 0.47 -4.19 16 11 N -0.97 -60.81 13.06 21.65 0.28 -60.53 16 12 Si 0.98 46.54 29.55 68.60 2.03 48.57 16 13 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 14 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 15 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 16 N -0.71 -15.01 4.52 -446.19 -2.02 -17.03 16 17 C 0.59 15.65 7.74 86.54 0.67 16.32 16 18 O -0.57 -18.70 13.01 -4.20 -0.05 -18.75 16 19 C -0.31 -7.37 6.13 -20.02 -0.12 -7.50 16 20 C 0.10 2.00 11.49 85.68 0.98 2.98 16 21 N -0.29 -6.16 12.48 -56.26 -0.70 -6.87 16 22 N -0.36 -7.01 3.99 -364.80 -1.46 -8.47 16 23 C 0.08 0.82 11.31 127.77 1.44 2.27 16 24 C 0.35 8.18 7.11 132.32 0.94 9.12 16 25 N -0.40 -9.26 2.79 -350.79 -0.98 -10.24 16 26 C 0.03 0.90 8.94 83.14 0.74 1.65 16 27 C -0.21 -4.70 10.86 22.16 0.24 -4.46 16 28 C -0.17 -3.13 10.86 22.16 0.24 -2.89 16 29 C -0.04 -0.67 9.93 83.14 0.83 0.16 16 30 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.06 1.82 7.75 -2.39 -0.02 1.80 16 37 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.37 20.70 7.67 -92.70 -0.71 19.99 16 40 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 41 H 0.41 6.67 7.55 -92.71 -0.70 5.97 16 42 H 0.23 2.70 7.50 -2.91 -0.02 2.68 16 43 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.11 0.76 5.41 -2.39 -0.01 0.75 16 45 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.15 4.41 7.15 -2.91 -0.02 4.39 16 47 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 48 H 0.17 2.01 8.06 -2.91 -0.02 1.98 16 49 H 0.19 2.03 6.91 -2.91 -0.02 2.01 16 Total: -1.00 -78.58 405.66 3.66 -74.92 By element: Atomic # 1 Polarization: 37.23 SS G_CDS: -0.44 Total: 36.80 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: 8.92 Total: 2.50 kcal Atomic # 7 Polarization: -137.24 SS G_CDS: -6.80 Total: -144.04 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.05 Total: -18.75 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -78.58 3.66 -74.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330884070.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.671 kcal (2) G-P(sol) polarization free energy of solvation -78.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds