Wall clock time and date at job start Wed Apr 1 2020 04:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 C 1.53001 * 109.47049 * 185.00237 * 4 2 1 6 6 C 1.53002 * 109.46964 * 180.02562 * 5 4 2 7 7 N 1.46504 * 109.46727 * 180.02562 * 6 5 4 8 8 C 1.36940 * 119.99562 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99899 * 0.02562 * 8 7 6 10 10 C 1.38812 * 119.99756 * 179.97438 * 8 7 6 11 11 N 1.31618 * 119.99754 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99833 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.46848 * 60.00741 * 12 10 8 14 14 H 1.48497 * 109.46925 * 180.02562 * 12 10 8 15 15 H 1.48492 * 109.47133 * 300.00436 * 12 10 8 16 16 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 17 17 C 1.34770 * 120.00256 * 84.99846 * 16 2 1 18 18 O 1.21654 * 119.99919 * 359.97438 * 17 16 2 19 19 C 1.47017 * 120.00284 * 180.02562 * 17 16 2 20 20 C 1.41371 * 126.48029 * 359.68917 * 19 17 16 21 21 N 1.30362 * 108.15911 * 179.85445 * 20 19 17 22 22 N 1.39909 * 109.14604 * 0.40729 * 21 20 19 23 23 C 1.46497 * 125.75513 * 179.69808 * 22 21 20 24 24 C 1.34739 * 108.48415 * 359.73744 * 22 21 20 25 25 N 1.38996 * 126.40689 * 180.02562 * 24 22 21 26 26 C 1.36723 * 125.68773 * 134.69555 * 25 24 22 27 27 C 1.34784 * 108.18586 * 179.82700 * 26 25 24 28 28 C 1.41023 * 107.50090 * 0.42250 * 27 26 25 29 29 C 1.34780 * 107.50412 * 359.73750 * 28 27 26 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 33 33 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 34 34 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 35 35 H 1.08998 * 109.47250 * 300.00119 * 5 4 2 36 36 H 1.08998 * 109.47252 * 60.00195 * 5 4 2 37 37 H 1.09002 * 109.46615 * 299.99612 * 6 5 4 38 38 H 1.08998 * 109.47254 * 59.99857 * 6 5 4 39 39 H 0.96997 * 120.00417 * 0.02562 * 7 6 5 40 40 H 0.97008 * 119.99228 * 179.97438 * 11 10 8 41 41 H 0.97005 * 119.99374 * 264.99912 * 16 2 1 42 42 H 1.07998 * 125.92368 * 0.02562 * 20 19 17 43 43 H 1.08994 * 109.47528 * 270.04423 * 23 22 21 44 44 H 1.09000 * 109.47348 * 30.04434 * 23 22 21 45 45 H 1.08999 * 109.47309 * 150.04014 * 23 22 21 46 46 H 1.08003 * 125.91172 * 359.97438 * 26 25 24 47 47 H 1.08003 * 126.25375 * 180.18451 * 27 26 25 48 48 H 1.08002 * 126.24645 * 179.73429 * 28 27 26 49 49 H 1.08004 * 125.90436 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 6 4.0749 -1.3351 2.5626 7 7 5.5350 -1.2311 2.6246 8 6 6.2187 -1.8053 3.6629 9 1 5.6817 -2.3351 4.4357 10 6 7.6021 -1.7072 3.7214 11 7 8.2565 -1.0620 2.7791 12 14 8.5348 -2.4898 5.1381 13 1 8.2780 -3.9525 5.1518 14 1 9.9895 -2.2438 4.9689 15 1 8.0784 -1.8950 6.4198 16 7 2.0184 -0.6905 -1.1962 17 6 2.1471 -0.0181 -2.3571 18 8 1.8573 1.1622 -2.4118 19 6 2.6367 -0.7111 -3.5577 20 6 3.0156 -2.0701 -3.6480 21 7 3.3890 -2.3072 -4.8743 22 7 3.2807 -1.1300 -5.6226 23 6 3.6128 -0.9844 -7.0420 24 6 2.8203 -0.1528 -4.8174 25 7 2.5744 1.1666 -5.1789 26 6 1.4621 1.8900 -4.8489 27 6 1.5910 3.1237 -5.3761 28 6 2.8209 3.1643 -6.0649 29 6 3.4018 1.9557 -5.9287 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.6054 -0.2618 2.1369 34 1 1.7517 -1.7715 1.2055 35 1 3.9995 -1.0727 0.4259 36 1 3.8532 0.4370 1.3574 37 1 3.6403 -0.8759 3.4505 38 1 3.7866 -2.3853 2.5184 39 1 6.0172 -0.7549 1.9306 40 1 9.2233 -0.9932 2.8203 41 1 2.2491 -1.6317 -1.1527 42 1 2.9961 -2.7882 -2.8416 43 1 4.6603 -0.7006 -7.1429 44 1 3.4421 -1.9314 -7.5541 45 1 2.9830 -0.2131 -7.4853 46 1 0.6260 1.5352 -4.2645 47 1 0.8801 3.9324 -5.2904 48 1 3.2237 4.0094 -6.6033 49 1 4.3557 1.6614 -6.3409 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330884077.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:57 Heat of formation + Delta-G solvation = 105.884939 kcal Electronic energy + Delta-G solvation = -29868.678162 eV Core-core repulsion = 25834.027127 eV Total energy + Delta-G solvation = -4034.651035 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.44500 -40.77373 -39.51037 -36.67887 -34.81012 -34.19189 -33.00205 -32.50485 -31.15353 -29.47237 -29.13111 -28.86325 -27.50852 -25.64512 -23.71437 -22.85643 -22.30561 -21.46004 -20.79238 -20.66729 -20.26498 -19.72713 -18.72579 -17.26884 -16.98511 -16.38433 -16.24879 -15.58965 -14.98867 -14.80037 -14.63893 -14.49401 -14.37946 -14.17758 -13.87896 -13.75244 -13.47806 -13.40701 -13.19387 -13.09123 -12.93235 -12.67135 -12.53449 -12.30910 -12.12941 -12.06737 -11.45964 -11.27860 -11.12658 -10.82384 -10.77607 -10.45044 -10.37352 -10.30522 -10.01223 -9.91708 -9.65637 -9.42640 -9.06624 -8.83567 -8.61330 -8.37650 -6.88628 -5.73195 -3.01891 0.73219 1.49061 1.78306 2.12421 2.63541 2.85810 3.15095 3.30117 3.45732 3.49662 3.51161 3.93751 4.43961 4.55527 4.58451 4.60159 4.67186 4.80056 4.86443 4.89282 5.03857 5.07015 5.15550 5.20154 5.35360 5.39494 5.45635 5.59957 5.60766 5.66436 5.82519 5.86499 5.99381 6.02358 6.03061 6.06726 6.09613 6.16073 6.24774 6.39286 6.44555 6.53536 6.67234 6.83191 6.90320 6.93469 7.06225 7.15106 7.50764 7.71768 8.23156 8.45914 9.56478 10.16034 10.50199 11.49731 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.011479 B = 0.002341 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.609104 B =11957.677713 C =12812.282448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.090 0.910 4 C -0.123 4.123 5 C -0.126 4.126 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.240 4.240 9 H 0.069 0.931 10 C -0.015 4.015 11 N -0.934 5.934 12 Si 0.907 3.093 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 N -0.714 5.714 17 C 0.593 3.407 18 O -0.539 6.539 19 C -0.285 4.285 20 C 0.098 3.902 21 N -0.273 5.273 22 N -0.363 5.363 23 C 0.091 3.909 24 C 0.360 3.640 25 N -0.392 5.392 26 C 0.060 3.940 27 C -0.204 4.204 28 C -0.171 4.171 29 C -0.033 4.033 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.017 0.983 38 H 0.016 0.984 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.399 0.601 42 H 0.200 0.800 43 H 0.083 0.917 44 H 0.101 0.899 45 H 0.091 0.909 46 H 0.167 0.833 47 H 0.143 0.857 48 H 0.142 0.858 49 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.636 2.331 -21.794 28.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.108 0.892 4 C -0.161 4.161 5 C -0.163 4.163 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.371 4.371 9 H 0.087 0.913 10 C -0.211 4.211 11 N -0.583 5.583 12 Si 0.738 3.262 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 N -0.365 5.365 17 C 0.380 3.620 18 O -0.417 6.417 19 C -0.302 4.302 20 C -0.089 4.089 21 N -0.093 5.093 22 N -0.145 5.145 23 C -0.050 4.050 24 C 0.136 3.864 25 N -0.070 5.070 26 C -0.066 4.066 27 C -0.228 4.228 28 C -0.196 4.196 29 C -0.157 4.157 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.035 0.965 38 H 0.034 0.966 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.233 0.767 42 H 0.217 0.783 43 H 0.102 0.898 44 H 0.119 0.881 45 H 0.110 0.890 46 H 0.185 0.815 47 H 0.161 0.839 48 H 0.160 0.840 49 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -17.260 1.925 -22.565 28.475 hybrid contribution 0.827 -0.188 1.139 1.420 sum -16.433 1.736 -21.426 27.058 Atomic orbital electron populations 1.22167 0.95459 1.01943 1.02364 1.21032 0.93515 0.97825 0.83591 0.89233 1.21851 0.96871 1.00769 0.96621 1.21731 0.93656 1.01464 0.99495 1.20649 0.86161 0.96413 0.94233 1.42383 1.00241 1.66178 1.29066 1.19199 0.89440 1.27128 1.01326 0.91273 1.24754 0.96464 1.01261 0.98645 1.69661 1.07240 1.46959 1.34434 0.86261 0.78981 0.78956 0.81960 1.21279 1.21691 1.21270 1.45815 1.67439 1.13942 1.09320 1.16949 0.77079 0.85935 0.81993 1.90821 1.51154 1.14963 1.84808 1.19908 1.21350 0.95783 0.93174 1.24025 0.95094 0.94711 0.95103 1.77323 1.24824 1.02244 1.04913 1.48646 1.50468 1.05454 1.09942 1.22115 1.02560 1.05088 0.75196 1.17889 0.97284 0.81611 0.89584 1.40584 1.17954 1.05507 1.42983 1.21957 0.90680 0.91893 1.02054 1.20969 0.99758 0.96852 1.05201 1.20987 0.96805 0.96835 1.04970 1.21902 0.98117 0.92343 1.03354 0.92572 0.91582 0.92346 0.90261 0.91408 0.92049 0.91981 0.96545 0.96577 0.78337 0.93493 0.76681 0.78304 0.89814 0.88084 0.89028 0.81523 0.83915 0.83995 0.82195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.48 37.16 0.35 -1.18 16 2 C 0.14 1.62 2.57 -67.93 -0.17 1.45 16 3 H 0.09 1.21 7.58 -51.93 -0.39 0.82 16 4 C -0.12 -1.42 4.75 -26.73 -0.13 -1.55 16 5 C -0.13 -1.99 5.22 -26.73 -0.14 -2.13 16 6 C 0.15 3.08 6.26 -4.04 -0.03 3.06 16 7 N -0.73 -19.18 5.60 -59.90 -0.34 -19.52 16 8 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 9 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 10 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 11 N -0.93 -28.95 13.06 55.49 0.72 -28.22 16 12 Si 0.91 22.76 29.55 -169.99 -5.02 17.73 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 14 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 N -0.71 -7.80 4.52 -55.01 -0.25 -8.05 16 17 C 0.59 7.72 7.75 -12.71 -0.10 7.62 16 18 O -0.54 -8.41 12.99 5.23 0.07 -8.34 16 19 C -0.29 -3.42 6.13 -104.86 -0.64 -4.06 16 20 C 0.10 1.00 11.49 -16.98 -0.20 0.81 16 21 N -0.27 -3.03 12.48 30.86 0.39 -2.65 16 22 N -0.36 -3.68 3.99 -66.66 -0.27 -3.95 16 23 C 0.09 0.54 10.56 59.85 0.63 1.17 16 24 C 0.36 4.24 7.10 -153.04 -1.09 3.15 16 25 N -0.39 -4.54 2.75 -62.23 -0.17 -4.71 16 26 C 0.06 0.71 8.94 -16.60 -0.15 0.56 16 27 C -0.20 -2.19 10.86 -39.75 -0.43 -2.62 16 28 C -0.17 -1.70 10.86 -39.75 -0.43 -2.13 16 29 C -0.03 -0.34 10.01 -16.59 -0.17 -0.50 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.99 7.75 -51.93 -0.40 0.58 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.38 10.58 7.67 -40.82 -0.31 10.27 16 40 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.40 3.54 7.55 -40.82 -0.31 3.23 16 42 H 0.20 1.36 7.50 -52.49 -0.39 0.96 16 43 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.09 0.46 7.48 -51.93 -0.39 0.07 16 46 H 0.17 1.96 7.13 -52.48 -0.37 1.59 16 47 H 0.14 1.27 8.06 -52.48 -0.42 0.84 16 48 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 49 H 0.16 1.24 7.91 -52.48 -0.42 0.82 16 LS Contribution 407.99 15.07 6.15 6.15 Total: -1.00 -36.17 407.99 -9.26 -45.43 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -7.61 Total: 10.07 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -2.93 Total: -3.94 kcal Atomic # 7 Polarization: -67.18 SS G_CDS: 0.09 Total: -67.09 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.07 Total: -8.34 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.17 -9.26 -45.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330884077.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.315 kcal (2) G-P(sol) polarization free energy of solvation -36.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds