Wall clock time and date at job start Wed Apr 1 2020 04:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 C 1.53001 * 109.47049 * 185.00237 * 4 2 1 6 6 C 1.53002 * 109.46964 * 180.02562 * 5 4 2 7 7 N 1.46504 * 109.46727 * 180.02562 * 6 5 4 8 8 C 1.36940 * 119.99562 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99899 * 0.02562 * 8 7 6 10 10 C 1.38812 * 119.99756 * 179.97438 * 8 7 6 11 11 N 1.31618 * 119.99754 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99833 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.46848 * 60.00741 * 12 10 8 14 14 H 1.48497 * 109.46925 * 180.02562 * 12 10 8 15 15 H 1.48492 * 109.47133 * 300.00436 * 12 10 8 16 16 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 17 17 C 1.34770 * 120.00256 * 84.99846 * 16 2 1 18 18 O 1.21654 * 119.99919 * 359.97438 * 17 16 2 19 19 C 1.47017 * 120.00284 * 180.02562 * 17 16 2 20 20 C 1.41371 * 126.48029 * 359.68917 * 19 17 16 21 21 N 1.30362 * 108.15911 * 179.85445 * 20 19 17 22 22 N 1.39909 * 109.14604 * 0.40729 * 21 20 19 23 23 C 1.46497 * 125.75513 * 179.69808 * 22 21 20 24 24 C 1.34739 * 108.48415 * 359.73744 * 22 21 20 25 25 N 1.38996 * 126.40689 * 180.02562 * 24 22 21 26 26 C 1.36723 * 125.68773 * 134.69555 * 25 24 22 27 27 C 1.34784 * 108.18586 * 179.82700 * 26 25 24 28 28 C 1.41023 * 107.50090 * 0.42250 * 27 26 25 29 29 C 1.34780 * 107.50412 * 359.73750 * 28 27 26 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 33 33 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 34 34 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 35 35 H 1.08998 * 109.47250 * 300.00119 * 5 4 2 36 36 H 1.08998 * 109.47252 * 60.00195 * 5 4 2 37 37 H 1.09002 * 109.46615 * 299.99612 * 6 5 4 38 38 H 1.08998 * 109.47254 * 59.99857 * 6 5 4 39 39 H 0.96997 * 120.00417 * 0.02562 * 7 6 5 40 40 H 0.97008 * 119.99228 * 179.97438 * 11 10 8 41 41 H 0.97005 * 119.99374 * 264.99912 * 16 2 1 42 42 H 1.07998 * 125.92368 * 0.02562 * 20 19 17 43 43 H 1.08994 * 109.47528 * 270.04423 * 23 22 21 44 44 H 1.09000 * 109.47348 * 30.04434 * 23 22 21 45 45 H 1.08999 * 109.47309 * 150.04014 * 23 22 21 46 46 H 1.08003 * 125.91172 * 359.97438 * 26 25 24 47 47 H 1.08003 * 126.25375 * 180.18451 * 27 26 25 48 48 H 1.08002 * 126.24645 * 179.73429 * 28 27 26 49 49 H 1.08004 * 125.90436 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 6 4.0749 -1.3351 2.5626 7 7 5.5350 -1.2311 2.6246 8 6 6.2187 -1.8053 3.6629 9 1 5.6817 -2.3351 4.4357 10 6 7.6021 -1.7072 3.7214 11 7 8.2565 -1.0620 2.7791 12 14 8.5348 -2.4898 5.1381 13 1 8.2780 -3.9525 5.1518 14 1 9.9895 -2.2438 4.9689 15 1 8.0784 -1.8950 6.4198 16 7 2.0184 -0.6905 -1.1962 17 6 2.1471 -0.0181 -2.3571 18 8 1.8573 1.1622 -2.4118 19 6 2.6367 -0.7111 -3.5577 20 6 3.0156 -2.0701 -3.6480 21 7 3.3890 -2.3072 -4.8743 22 7 3.2807 -1.1300 -5.6226 23 6 3.6128 -0.9844 -7.0420 24 6 2.8203 -0.1528 -4.8174 25 7 2.5744 1.1666 -5.1789 26 6 1.4621 1.8900 -4.8489 27 6 1.5910 3.1237 -5.3761 28 6 2.8209 3.1643 -6.0649 29 6 3.4018 1.9557 -5.9287 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.6054 -0.2618 2.1369 34 1 1.7517 -1.7715 1.2055 35 1 3.9995 -1.0727 0.4259 36 1 3.8532 0.4370 1.3574 37 1 3.6403 -0.8759 3.4505 38 1 3.7866 -2.3853 2.5184 39 1 6.0172 -0.7549 1.9306 40 1 9.2233 -0.9932 2.8203 41 1 2.2491 -1.6317 -1.1527 42 1 2.9961 -2.7882 -2.8416 43 1 4.6603 -0.7006 -7.1429 44 1 3.4421 -1.9314 -7.5541 45 1 2.9830 -0.2131 -7.4853 46 1 0.6260 1.5352 -4.2645 47 1 0.8801 3.9324 -5.2904 48 1 3.2237 4.0094 -6.6033 49 1 4.3557 1.6614 -6.3409 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330884077.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:56 Heat of formation + Delta-G solvation = 83.491159 kcal Electronic energy + Delta-G solvation = -29869.649229 eV Core-core repulsion = 25834.027127 eV Total energy + Delta-G solvation = -4035.622102 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.24261 -41.56941 -40.47820 -37.87746 -36.46494 -34.95556 -34.10610 -33.78130 -32.51022 -30.91947 -29.96203 -29.68408 -28.14596 -27.20145 -24.96424 -24.25341 -23.09128 -22.53406 -22.14873 -21.57740 -21.06243 -20.57127 -19.54112 -19.10825 -18.13802 -17.23909 -17.12724 -16.64638 -16.35882 -15.90222 -15.84073 -15.51500 -15.33125 -15.26351 -15.12850 -15.00383 -14.67352 -14.46779 -14.15060 -13.90220 -13.71431 -13.59621 -13.41509 -13.32891 -13.15034 -13.06048 -12.94534 -12.73180 -12.36845 -12.29478 -12.24496 -12.05814 -11.83296 -11.68521 -11.46349 -11.09423 -10.92678 -10.91333 -10.24635 -9.97882 -9.44745 -9.19234 -9.00122 -7.95331 -5.24694 -0.11461 0.75831 0.96870 1.30989 1.46664 1.50440 1.56562 1.89388 2.05506 2.25626 2.38164 2.56183 3.24360 3.38247 3.66518 3.73017 3.77332 3.94381 4.02478 4.14745 4.17243 4.22461 4.26272 4.32546 4.35506 4.46335 4.48626 4.60818 4.62134 4.63226 4.73603 4.86768 4.89708 4.97531 5.04652 5.10971 5.17803 5.22828 5.27600 5.34714 5.36501 5.41147 5.45333 5.51856 5.64523 5.88036 6.04579 6.26997 6.27335 6.34505 6.62406 7.29908 7.32379 8.10311 8.31981 9.28359 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.011479 B = 0.002341 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.609104 B =11957.677713 C =12812.282448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.149 3.851 3 H 0.063 0.937 4 C -0.109 4.109 5 C -0.113 4.113 6 C 0.150 3.850 7 N -0.751 5.751 8 C -0.247 4.247 9 H 0.078 0.922 10 C -0.080 4.080 11 N -0.973 5.973 12 Si 0.976 3.024 13 H -0.275 1.275 14 H -0.296 1.296 15 H -0.277 1.277 16 N -0.706 5.706 17 C 0.589 3.411 18 O -0.572 6.572 19 C -0.307 4.307 20 C 0.103 3.897 21 N -0.290 5.290 22 N -0.359 5.359 23 C 0.081 3.919 24 C 0.347 3.653 25 N -0.397 5.397 26 C 0.038 3.962 27 C -0.210 4.210 28 C -0.178 4.178 29 C -0.039 4.039 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.042 0.958 37 H 0.019 0.981 38 H 0.028 0.972 39 H 0.371 0.629 40 H 0.251 0.749 41 H 0.410 0.590 42 H 0.228 0.772 43 H 0.099 0.901 44 H 0.116 0.884 45 H 0.100 0.900 46 H 0.158 0.842 47 H 0.156 0.844 48 H 0.165 0.835 49 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.332 1.146 -21.756 28.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.044 3.956 3 H 0.081 0.919 4 C -0.147 4.147 5 C -0.151 4.151 6 C 0.024 3.976 7 N -0.394 5.394 8 C -0.379 4.379 9 H 0.096 0.904 10 C -0.272 4.272 11 N -0.624 5.624 12 Si 0.805 3.195 13 H -0.201 1.201 14 H -0.222 1.222 15 H -0.203 1.203 16 N -0.357 5.357 17 C 0.377 3.623 18 O -0.453 6.453 19 C -0.324 4.324 20 C -0.084 4.084 21 N -0.110 5.110 22 N -0.141 5.141 23 C -0.058 4.058 24 C 0.123 3.877 25 N -0.076 5.076 26 C -0.088 4.088 27 C -0.234 4.234 28 C -0.202 4.202 29 C -0.162 4.162 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.037 0.963 38 H 0.046 0.954 39 H 0.202 0.798 40 H 0.060 0.940 41 H 0.247 0.753 42 H 0.244 0.756 43 H 0.117 0.883 44 H 0.134 0.866 45 H 0.118 0.882 46 H 0.175 0.825 47 H 0.174 0.826 48 H 0.182 0.818 49 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -18.002 0.697 -22.523 28.841 hybrid contribution 0.993 0.203 1.085 1.485 sum -17.009 0.900 -21.438 27.381 Atomic orbital electron populations 1.22082 0.93686 1.03010 1.02288 1.20938 0.94764 0.96399 0.83471 0.91911 1.21755 0.93368 1.02401 0.97177 1.21589 0.96658 0.99512 0.97300 1.20868 0.83048 0.97496 0.96191 1.42669 1.02647 1.65855 1.28200 1.19654 0.90019 1.26373 1.01821 0.90429 1.25637 0.97564 1.02484 1.01468 1.69833 1.07071 1.48880 1.36569 0.85172 0.76999 0.78454 0.78919 1.20058 1.22228 1.20315 1.45751 1.66838 1.14405 1.08702 1.17167 0.76728 0.85650 0.82708 1.90799 1.52714 1.16388 1.85375 1.19997 1.22558 0.96729 0.93101 1.24460 0.94011 0.94415 0.95555 1.77279 1.25445 1.02906 1.05385 1.48943 1.49517 1.04669 1.10932 1.22458 1.03682 1.06347 0.73276 1.18092 0.97520 0.82062 0.90072 1.40680 1.18089 1.05599 1.43227 1.21981 0.91114 0.92671 1.03056 1.21276 1.00482 0.96769 1.04824 1.21321 0.96418 0.97552 1.04949 1.22369 0.98682 0.92323 1.02831 0.90864 0.90431 0.93685 0.89125 0.89092 0.92405 0.93913 0.96305 0.95416 0.79800 0.94045 0.75334 0.75564 0.88288 0.86598 0.88157 0.82462 0.82608 0.81762 0.80067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.48 71.98 0.68 -1.99 16 2 C 0.15 3.20 2.57 44.99 0.12 3.32 16 3 H 0.06 1.72 7.58 -2.39 -0.02 1.71 16 4 C -0.11 -2.30 4.75 30.59 0.15 -2.15 16 5 C -0.11 -3.49 5.22 30.60 0.16 -3.33 16 6 C 0.15 5.87 6.26 86.38 0.54 6.41 16 7 N -0.75 -39.27 5.60 -343.44 -1.92 -41.19 16 8 C -0.25 -14.07 9.99 84.03 0.84 -13.23 16 9 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 10 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 11 N -0.97 -61.07 13.06 21.65 0.28 -60.79 16 12 Si 0.98 46.63 29.55 68.60 2.03 48.66 16 13 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 14 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 15 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 16 N -0.71 -14.93 4.52 -446.18 -2.02 -16.95 16 17 C 0.59 15.57 7.75 86.55 0.67 16.24 16 18 O -0.57 -18.56 12.99 -4.20 -0.05 -18.61 16 19 C -0.31 -7.36 6.13 -20.02 -0.12 -7.48 16 20 C 0.10 2.00 11.49 85.68 0.98 2.99 16 21 N -0.29 -6.17 12.48 -56.27 -0.70 -6.87 16 22 N -0.36 -7.00 3.99 -364.81 -1.46 -8.45 16 23 C 0.08 0.86 10.56 127.77 1.35 2.21 16 24 C 0.35 8.17 7.10 132.32 0.94 9.11 16 25 N -0.40 -9.26 2.75 -350.80 -0.97 -10.23 16 26 C 0.04 0.92 8.94 83.14 0.74 1.67 16 27 C -0.21 -4.51 10.86 22.16 0.24 -4.27 16 28 C -0.18 -3.38 10.86 22.16 0.24 -3.14 16 29 C -0.04 -0.76 10.01 83.14 0.83 0.08 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 1.82 7.75 -2.39 -0.02 1.81 16 36 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.37 20.86 7.67 -92.71 -0.71 20.15 16 40 H 0.25 15.26 8.31 -92.70 -0.77 14.49 16 41 H 0.41 6.64 7.55 -92.70 -0.70 5.94 16 42 H 0.23 2.70 7.50 -2.91 -0.02 2.68 16 43 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.10 0.88 7.48 -2.39 -0.02 0.86 16 46 H 0.16 4.00 7.13 -2.91 -0.02 3.98 16 47 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 48 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 49 H 0.18 2.54 7.91 -2.91 -0.02 2.52 16 Total: -1.00 -78.70 407.99 3.57 -75.13 By element: Atomic # 1 Polarization: 37.53 SS G_CDS: -0.44 Total: 37.09 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 8.83 Total: 2.23 kcal Atomic # 7 Polarization: -137.70 SS G_CDS: -6.78 Total: -144.49 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.05 Total: -18.61 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -78.70 3.57 -75.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330884077.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.617 kcal (2) G-P(sol) polarization free energy of solvation -78.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds