Wall clock time and date at job start Wed Apr 1 2020 03:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 119.99957 * 2 1 4 4 N 1.46507 * 109.47085 * 125.00202 * 3 2 1 5 5 C 1.36740 * 127.13907 * 270.71781 * 4 3 2 6 6 C 1.50700 * 126.34530 * 359.95537 * 5 4 3 7 7 H 1.09002 * 110.85517 * 4.08444 * 6 5 4 8 8 C 1.54486 * 110.96595 * 127.90875 * 6 5 4 9 9 N 1.46764 * 105.46881 * 143.53691 * 8 6 5 10 10 C 1.34424 * 111.30156 * 342.98571 * 9 8 6 11 11 O 1.21287 * 124.93855 * 180.44474 * 10 9 8 12 12 C 1.51278 * 110.11482 * 0.40552 * 10 9 8 13 13 N 1.30287 * 107.30403 * 180.22112 * 5 4 3 14 14 N 1.28527 * 110.05706 * 359.77702 * 13 5 4 15 15 C 1.31215 * 109.85974 * 359.97438 * 14 13 5 16 16 N 1.38579 * 126.47315 * 179.97438 * 15 14 13 17 17 C 1.46849 * 110.99868 * 296.54795 * 16 15 14 18 18 C 1.53032 * 109.52711 * 185.84052 * 17 16 15 19 19 C 1.53119 * 109.27955 * 300.82498 * 18 17 16 20 20 C 1.53119 * 109.16091 * 57.65193 * 19 18 17 21 21 H 1.09000 * 109.50728 * 62.32557 * 20 19 18 22 22 C 1.50702 * 109.50590 * 182.40678 * 20 19 18 23 23 H 1.08003 * 119.99939 * 119.99824 * 22 20 19 24 24 C 1.37881 * 119.99595 * 300.00153 * 22 20 19 25 25 N 1.31514 * 119.99410 * 179.97438 * 24 22 20 26 26 Si 1.86799 * 120.00156 * 359.97438 * 24 22 20 27 27 H 1.48500 * 109.46921 * 90.00081 * 26 24 22 28 28 H 1.48497 * 109.46909 * 329.99947 * 26 24 22 29 29 H 1.48502 * 109.46706 * 210.00065 * 26 24 22 30 30 C 1.46841 * 111.00492 * 60.76298 * 16 15 14 31 31 H 1.08000 * 119.99954 * 359.97438 * 1 2 3 32 32 H 1.07996 * 120.00012 * 179.97438 * 1 2 3 33 33 H 1.08000 * 119.99954 * 180.02562 * 2 1 3 34 34 H 1.09000 * 109.47352 * 5.00354 * 3 2 1 35 35 H 1.09004 * 109.47414 * 244.99989 * 3 2 1 36 36 H 1.08990 * 110.24812 * 262.53446 * 8 6 5 37 37 H 1.08999 * 110.24514 * 24.54111 * 8 6 5 38 38 H 0.97001 * 124.34728 * 162.96530 * 9 8 6 39 39 H 1.08993 * 110.49199 * 257.57212 * 12 10 9 40 40 H 1.09010 * 110.48046 * 134.93037 * 12 10 9 41 41 H 1.09005 * 109.45822 * 65.82786 * 17 16 15 42 42 H 1.08994 * 109.46315 * 305.86000 * 17 16 15 43 43 H 1.08999 * 109.50822 * 180.87864 * 18 17 16 44 44 H 1.09001 * 109.50267 * 60.76059 * 18 17 16 45 45 H 1.08995 * 109.52175 * 297.74694 * 19 18 17 46 46 H 1.08999 * 109.57503 * 177.58423 * 19 18 17 47 47 H 0.97002 * 119.99856 * 180.02562 * 25 24 22 48 48 H 1.09005 * 109.46559 * 54.14278 * 30 16 15 49 49 H 1.09006 * 109.45880 * 294.17680 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.7407 1.7809 2.3980 6 6 1.4385 2.3491 2.9005 7 1 0.6692 2.2966 2.1301 8 6 0.9819 1.6293 4.1889 9 7 0.3654 2.6694 5.0208 10 6 0.7134 3.8988 4.6032 11 8 0.3507 4.9356 5.1175 12 6 1.6240 3.8009 3.3992 13 7 3.8356 1.6317 3.0881 14 7 4.7549 1.1186 2.3508 15 6 4.2917 0.9107 1.1409 16 7 4.9906 0.3714 0.0727 17 6 6.1144 1.2353 -0.3109 18 6 6.7722 0.6861 -1.5788 19 6 7.2663 -0.7390 -1.3154 20 6 6.0853 -1.6064 -0.8711 21 1 5.3473 -1.6543 -1.6718 22 6 6.5734 -2.9962 -0.5528 23 1 6.4391 -3.4017 0.4392 24 6 7.1913 -3.7500 -1.5280 25 7 7.6176 -4.9626 -1.2501 26 14 7.4229 -3.0487 -3.2439 27 1 8.7253 -2.3392 -3.3169 28 1 6.3230 -2.0966 -3.5420 29 1 7.4043 -4.1531 -4.2365 30 6 5.4474 -0.9907 0.3764 31 1 -0.5400 0.9353 0.0004 32 1 -0.5400 -0.9353 -0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 1.3586 2.1316 0.0896 35 1 2.6213 1.4026 -0.9314 36 1 0.2524 0.8555 3.9503 37 1 1.8396 1.1948 4.7024 38 1 -0.2185 2.4924 5.7749 39 1 2.6601 3.9751 3.6893 40 1 1.3176 4.5104 2.6305 41 1 6.8461 1.2591 0.4967 42 1 5.7487 2.2446 -0.4994 43 1 7.6159 1.3187 -1.8544 44 1 6.0447 0.6748 -2.3905 45 1 8.0223 -0.7231 -0.5304 46 1 7.6974 -1.1506 -2.2280 47 1 8.0527 -5.4929 -1.9361 48 1 4.5973 -1.5982 0.6871 49 1 6.1823 -0.9564 1.1808 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338789950.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:03 Heat of formation + Delta-G solvation = 79.802268 kcal Electronic energy + Delta-G solvation = -31061.882434 eV Core-core repulsion = 27026.100370 eV Total energy + Delta-G solvation = -4035.782064 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.10899 -40.51336 -38.65310 -36.88200 -36.37554 -34.16193 -33.04697 -32.58835 -31.85950 -30.49337 -29.03577 -27.64392 -27.02555 -25.11743 -24.31453 -23.67061 -21.75313 -21.20873 -20.94040 -20.55896 -20.08657 -18.89787 -17.84241 -17.57047 -17.07598 -16.45967 -16.23379 -16.05734 -15.40948 -15.10914 -14.66065 -14.47210 -14.33178 -14.06094 -13.90953 -13.85508 -13.63017 -13.45054 -13.23797 -13.03268 -12.71966 -12.56873 -12.35468 -12.13079 -11.88122 -11.67698 -11.61474 -11.32343 -11.17128 -10.72525 -10.60042 -10.33935 -10.25483 -10.19282 -10.12472 -9.91553 -9.86190 -9.49510 -9.33349 -9.12495 -8.90130 -8.59626 -8.47775 -6.13691 -4.14157 1.51032 1.68168 2.26039 2.36027 2.75324 3.00470 3.22207 3.32554 3.35071 3.66779 3.89435 4.02922 4.09799 4.30296 4.34714 4.44743 4.45719 4.50354 4.92867 5.02544 5.08613 5.12480 5.14488 5.18299 5.25630 5.35426 5.37376 5.46665 5.52621 5.59570 5.69120 5.80326 5.93698 5.98574 6.09243 6.12577 6.21584 6.25145 6.34925 6.37954 6.43930 6.49684 6.61598 6.65046 6.70817 6.99600 7.07741 7.44008 7.48813 7.70040 7.88052 8.43183 8.70682 8.89290 9.47531 10.99370 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.019003 B = 0.002716 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.075976 B =10305.040001 C =10596.928526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.171 4.171 3 C 0.139 3.861 4 N -0.459 5.459 5 C 0.171 3.829 6 C -0.007 4.007 7 H 0.107 0.893 8 C 0.113 3.887 9 N -0.729 5.729 10 C 0.526 3.474 11 O -0.534 6.534 12 C -0.146 4.146 13 N -0.276 5.276 14 N -0.308 5.308 15 C 0.372 3.628 16 N -0.473 5.473 17 C 0.075 3.925 18 C -0.118 4.118 19 C -0.126 4.126 20 C 0.024 3.976 21 H 0.036 0.964 22 C -0.516 4.516 23 H 0.074 0.926 24 C 0.073 3.927 25 N -0.899 5.899 26 Si 0.887 3.113 27 H -0.279 1.279 28 H -0.264 1.264 29 H -0.298 1.298 30 C 0.091 3.909 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.123 0.877 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.413 0.587 39 H 0.118 0.882 40 H 0.107 0.893 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.050 0.950 47 H 0.264 0.736 48 H 0.067 0.933 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.970 14.686 2.702 21.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.190 4.190 3 C 0.016 3.984 4 N -0.151 5.151 5 C -0.097 4.097 6 C -0.028 4.028 7 H 0.125 0.875 8 C -0.012 4.012 9 N -0.385 5.385 10 C 0.312 3.688 11 O -0.410 6.410 12 C -0.187 4.187 13 N -0.117 5.117 14 N -0.152 5.152 15 C 0.016 3.984 16 N -0.199 5.199 17 C -0.052 4.052 18 C -0.156 4.156 19 C -0.164 4.164 20 C 0.005 3.995 21 H 0.054 0.946 22 C -0.555 4.555 23 H 0.092 0.908 24 C -0.129 4.129 25 N -0.536 5.536 26 Si 0.718 3.282 27 H -0.206 1.206 28 H -0.189 1.189 29 H -0.226 1.226 30 C -0.035 4.035 31 H 0.116 0.884 32 H 0.125 0.875 33 H 0.141 0.859 34 H 0.112 0.888 35 H 0.132 0.868 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.252 0.748 39 H 0.136 0.864 40 H 0.125 0.875 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.085 0.915 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.326 15.096 3.542 21.801 hybrid contribution -0.320 -0.128 -1.320 1.364 sum -15.645 14.968 2.222 21.766 Atomic orbital electron populations 1.23926 0.95404 1.02452 0.98934 1.23176 0.96190 0.98509 1.01075 1.20971 0.91630 0.96956 0.88793 1.46360 1.11183 1.46776 1.10786 1.23944 0.98462 1.04943 0.82339 1.20273 0.90449 0.94457 0.97661 0.87531 1.22095 0.99194 0.90201 0.89738 1.46187 1.51019 1.07018 1.34282 1.20730 0.79957 0.83215 0.84935 1.90774 1.57402 1.31452 1.61409 1.22453 1.02723 0.96007 0.97512 1.73963 0.96745 1.15407 1.25624 1.74748 1.22752 1.17282 1.00380 1.22644 0.83879 0.99428 0.92473 1.58950 1.26513 1.04832 1.29622 1.22061 0.90511 0.94464 0.98188 1.21681 0.99423 0.98174 0.96338 1.22081 1.00331 0.93140 1.00819 1.19179 0.93039 0.94346 0.92966 0.94591 1.20913 1.38487 0.96600 0.99454 0.90785 1.24969 0.94813 0.94608 0.98549 1.69893 1.39691 1.09807 1.34246 0.86841 0.78985 0.77927 0.84480 1.20558 1.18862 1.22579 1.22222 0.98885 0.82622 0.99764 0.88353 0.87519 0.85926 0.88766 0.86835 0.89468 0.89157 0.74776 0.86384 0.87495 0.93038 0.91796 0.91868 0.91654 0.91945 0.93143 0.92563 0.91475 0.93242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 14.32 29.01 0.42 -0.67 16 2 C -0.17 -1.48 9.85 -36.03 -0.35 -1.84 16 3 C 0.14 1.18 6.31 -5.19 -0.03 1.15 16 4 N -0.46 -5.42 2.79 -115.36 -0.32 -5.75 16 5 C 0.17 1.94 6.61 -154.02 -1.02 0.92 16 6 C -0.01 -0.05 3.52 -90.14 -0.32 -0.37 16 7 H 0.11 0.53 7.13 -51.93 -0.37 0.16 16 8 C 0.11 0.77 7.34 -3.12 -0.02 0.75 16 9 N -0.73 -5.31 6.24 -59.20 -0.37 -5.67 16 10 C 0.53 5.24 8.43 -10.86 -0.09 5.14 16 11 O -0.53 -7.50 18.03 5.55 0.10 -7.40 16 12 C -0.15 -1.18 6.41 -26.75 -0.17 -1.35 16 13 N -0.28 -4.15 11.77 32.99 0.39 -3.77 16 14 N -0.31 -5.32 12.19 30.31 0.37 -4.95 16 15 C 0.37 5.73 6.41 -318.88 -2.05 3.69 16 16 N -0.47 -7.65 4.67 -174.55 -0.82 -8.46 16 17 C 0.07 1.14 5.39 -3.84 -0.02 1.12 16 18 C -0.12 -1.86 6.09 -26.65 -0.16 -2.02 16 19 C -0.13 -2.52 4.73 -26.61 -0.13 -2.65 16 20 C 0.02 0.53 1.85 -91.69 -0.17 0.36 16 21 H 0.04 0.81 7.21 -51.93 -0.37 0.44 16 22 C -0.52 -13.79 9.15 -34.44 -0.31 -14.11 16 23 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 24 C 0.07 2.01 5.45 -17.82 -0.10 1.92 16 25 N -0.90 -26.73 13.96 55.43 0.77 -25.96 16 26 Si 0.89 20.98 24.35 -169.99 -4.14 16.85 16 27 H -0.28 -6.44 6.89 56.52 0.39 -6.05 16 28 H -0.26 -5.88 6.53 56.52 0.37 -5.52 16 29 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 30 C 0.09 1.76 4.59 -3.84 -0.02 1.74 16 31 H 0.10 0.43 7.84 -52.49 -0.41 0.02 16 32 H 0.11 0.65 8.06 -52.49 -0.42 0.22 16 33 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.09 0.51 7.02 -51.93 -0.36 0.15 16 35 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.09 0.77 7.63 -51.93 -0.40 0.37 16 38 H 0.41 2.34 8.96 -40.82 -0.37 1.97 16 39 H 0.12 1.12 7.82 -51.93 -0.41 0.71 16 40 H 0.11 0.69 8.14 -51.92 -0.42 0.27 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.05 1.07 3.34 -51.93 -0.17 0.90 16 47 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 48 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 49 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 391.69 15.07 5.90 5.90 Total: -1.00 -33.75 391.69 -10.19 -43.95 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -7.53 Total: 1.49 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -4.55 Total: -6.23 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 0.02 Total: -54.55 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: 0.10 Total: -7.40 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.14 Total: 16.85 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.75 -10.19 -43.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338789950.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.748 kcal (2) G-P(sol) polarization free energy of solvation -33.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds