Wall clock time and date at job start Wed Apr 1 2020 03:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 119.99957 * 2 1 4 4 N 1.46507 * 109.47085 * 125.00202 * 3 2 1 5 5 C 1.36740 * 127.13907 * 270.71781 * 4 3 2 6 6 C 1.50700 * 126.34530 * 359.95537 * 5 4 3 7 7 H 1.09002 * 110.85517 * 4.08444 * 6 5 4 8 8 C 1.54486 * 110.96595 * 127.90875 * 6 5 4 9 9 N 1.46764 * 105.46881 * 143.53691 * 8 6 5 10 10 C 1.34424 * 111.30156 * 342.98571 * 9 8 6 11 11 O 1.21287 * 124.93855 * 180.44474 * 10 9 8 12 12 C 1.51278 * 110.11482 * 0.40552 * 10 9 8 13 13 N 1.30287 * 107.30403 * 180.22112 * 5 4 3 14 14 N 1.28527 * 110.05706 * 359.77702 * 13 5 4 15 15 C 1.31215 * 109.85974 * 359.97438 * 14 13 5 16 16 N 1.38579 * 126.47315 * 179.97438 * 15 14 13 17 17 C 1.46849 * 110.99868 * 296.54795 * 16 15 14 18 18 C 1.53032 * 109.52711 * 185.84052 * 17 16 15 19 19 C 1.53119 * 109.27955 * 300.82498 * 18 17 16 20 20 C 1.53119 * 109.16091 * 57.65193 * 19 18 17 21 21 H 1.09000 * 109.50728 * 62.32557 * 20 19 18 22 22 C 1.50702 * 109.50590 * 182.40678 * 20 19 18 23 23 H 1.08003 * 119.99939 * 119.99824 * 22 20 19 24 24 C 1.37881 * 119.99595 * 300.00153 * 22 20 19 25 25 N 1.31514 * 119.99410 * 179.97438 * 24 22 20 26 26 Si 1.86799 * 120.00156 * 359.97438 * 24 22 20 27 27 H 1.48500 * 109.46921 * 90.00081 * 26 24 22 28 28 H 1.48497 * 109.46909 * 329.99947 * 26 24 22 29 29 H 1.48502 * 109.46706 * 210.00065 * 26 24 22 30 30 C 1.46841 * 111.00492 * 60.76298 * 16 15 14 31 31 H 1.08000 * 119.99954 * 359.97438 * 1 2 3 32 32 H 1.07996 * 120.00012 * 179.97438 * 1 2 3 33 33 H 1.08000 * 119.99954 * 180.02562 * 2 1 3 34 34 H 1.09000 * 109.47352 * 5.00354 * 3 2 1 35 35 H 1.09004 * 109.47414 * 244.99989 * 3 2 1 36 36 H 1.08990 * 110.24812 * 262.53446 * 8 6 5 37 37 H 1.08999 * 110.24514 * 24.54111 * 8 6 5 38 38 H 0.97001 * 124.34728 * 162.96530 * 9 8 6 39 39 H 1.08993 * 110.49199 * 257.57212 * 12 10 9 40 40 H 1.09010 * 110.48046 * 134.93037 * 12 10 9 41 41 H 1.09005 * 109.45822 * 65.82786 * 17 16 15 42 42 H 1.08994 * 109.46315 * 305.86000 * 17 16 15 43 43 H 1.08999 * 109.50822 * 180.87864 * 18 17 16 44 44 H 1.09001 * 109.50267 * 60.76059 * 18 17 16 45 45 H 1.08995 * 109.52175 * 297.74694 * 19 18 17 46 46 H 1.08999 * 109.57503 * 177.58423 * 19 18 17 47 47 H 0.97002 * 119.99856 * 180.02562 * 25 24 22 48 48 H 1.09005 * 109.46559 * 54.14278 * 30 16 15 49 49 H 1.09006 * 109.45880 * 294.17680 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.7407 1.7809 2.3980 6 6 1.4385 2.3491 2.9005 7 1 0.6692 2.2966 2.1301 8 6 0.9819 1.6293 4.1889 9 7 0.3654 2.6694 5.0208 10 6 0.7134 3.8988 4.6032 11 8 0.3507 4.9356 5.1175 12 6 1.6240 3.8009 3.3992 13 7 3.8356 1.6317 3.0881 14 7 4.7549 1.1186 2.3508 15 6 4.2917 0.9107 1.1409 16 7 4.9906 0.3714 0.0727 17 6 6.1144 1.2353 -0.3109 18 6 6.7722 0.6861 -1.5788 19 6 7.2663 -0.7390 -1.3154 20 6 6.0853 -1.6064 -0.8711 21 1 5.3473 -1.6543 -1.6718 22 6 6.5734 -2.9962 -0.5528 23 1 6.4391 -3.4017 0.4392 24 6 7.1913 -3.7500 -1.5280 25 7 7.6176 -4.9626 -1.2501 26 14 7.4229 -3.0487 -3.2439 27 1 8.7253 -2.3392 -3.3169 28 1 6.3230 -2.0966 -3.5420 29 1 7.4043 -4.1531 -4.2365 30 6 5.4474 -0.9907 0.3764 31 1 -0.5400 0.9353 0.0004 32 1 -0.5400 -0.9353 -0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 1.3586 2.1316 0.0896 35 1 2.6213 1.4026 -0.9314 36 1 0.2524 0.8555 3.9503 37 1 1.8396 1.1948 4.7024 38 1 -0.2185 2.4924 5.7749 39 1 2.6601 3.9751 3.6893 40 1 1.3176 4.5104 2.6305 41 1 6.8461 1.2591 0.4967 42 1 5.7487 2.2446 -0.4994 43 1 7.6159 1.3187 -1.8544 44 1 6.0447 0.6748 -2.3905 45 1 8.0223 -0.7231 -0.5304 46 1 7.6974 -1.1506 -2.2280 47 1 8.0527 -5.4929 -1.9361 48 1 4.5973 -1.5982 0.6871 49 1 6.1823 -0.9564 1.1808 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338789950.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:02 Heat of formation + Delta-G solvation = 56.513411 kcal Electronic energy + Delta-G solvation = -31062.892315 eV Core-core repulsion = 27026.100370 eV Total energy + Delta-G solvation = -4036.791945 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.14364 -41.25404 -40.06387 -37.70650 -37.14664 -35.76943 -34.11384 -33.80608 -32.90962 -32.14964 -29.99678 -28.44777 -27.73499 -27.00335 -25.69010 -24.47113 -23.18386 -22.36513 -21.62773 -21.54844 -20.77669 -20.36540 -19.04731 -18.52912 -18.28776 -17.74190 -17.24831 -17.03527 -16.44413 -16.12105 -15.89239 -15.75787 -15.42892 -15.22669 -14.85073 -14.75848 -14.68297 -14.58136 -14.34462 -14.17505 -14.10163 -13.82305 -13.36527 -12.95318 -12.85558 -12.77642 -12.67865 -12.52270 -12.44744 -12.32184 -12.00774 -11.81071 -11.71195 -11.45839 -11.18080 -11.08796 -11.08190 -10.94599 -10.65142 -10.48436 -10.17047 -10.05907 -9.82916 -8.29622 -6.35153 0.56185 0.93179 1.33759 1.39048 1.48780 1.50439 1.56002 1.68384 2.34209 2.37052 2.68344 2.96581 3.06000 3.40008 3.47169 3.62228 3.79456 3.84255 3.86963 3.90503 4.00665 4.11691 4.22688 4.31257 4.35988 4.43465 4.52203 4.55038 4.59871 4.62019 4.67927 4.73878 4.77587 4.87086 4.91384 4.93593 4.99451 5.06264 5.08885 5.15846 5.35502 5.49186 5.57252 5.65411 5.66259 5.75180 5.76659 5.82981 5.97061 6.24768 6.29980 6.71337 7.18690 7.30385 7.63765 8.87404 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.019003 B = 0.002716 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.075976 B =10305.040001 C =10596.928526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.201 4.201 3 C 0.135 3.865 4 N -0.450 5.450 5 C 0.197 3.803 6 C -0.001 4.001 7 H 0.148 0.852 8 C 0.115 3.885 9 N -0.715 5.715 10 C 0.522 3.478 11 O -0.580 6.580 12 C -0.139 4.139 13 N -0.314 5.314 14 N -0.348 5.348 15 C 0.352 3.648 16 N -0.460 5.460 17 C 0.075 3.925 18 C -0.108 4.108 19 C -0.127 4.127 20 C 0.029 3.971 21 H 0.038 0.962 22 C -0.522 4.522 23 H 0.026 0.974 24 C 0.013 3.987 25 N -0.951 5.951 26 Si 0.953 3.047 27 H -0.266 1.266 28 H -0.236 1.236 29 H -0.302 1.302 30 C 0.109 3.891 31 H 0.133 0.867 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.138 0.862 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.070 0.930 38 H 0.421 0.579 39 H 0.101 0.899 40 H 0.130 0.870 41 H 0.035 0.965 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.047 0.953 46 H 0.044 0.956 47 H 0.266 0.734 48 H 0.052 0.948 49 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.790 17.618 0.432 25.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.220 4.220 3 C 0.015 3.985 4 N -0.141 5.141 5 C -0.072 4.072 6 C -0.022 4.022 7 H 0.166 0.834 8 C -0.011 4.011 9 N -0.370 5.370 10 C 0.309 3.691 11 O -0.461 6.461 12 C -0.180 4.180 13 N -0.154 5.154 14 N -0.192 5.192 15 C -0.005 4.005 16 N -0.186 5.186 17 C -0.052 4.052 18 C -0.146 4.146 19 C -0.164 4.164 20 C 0.010 3.990 21 H 0.056 0.944 22 C -0.561 4.561 23 H 0.045 0.955 24 C -0.184 4.184 25 N -0.591 5.591 26 Si 0.779 3.221 27 H -0.192 1.192 28 H -0.159 1.159 29 H -0.230 1.230 30 C -0.018 4.018 31 H 0.150 0.850 32 H 0.126 0.874 33 H 0.103 0.897 34 H 0.156 0.844 35 H 0.128 0.872 36 H 0.137 0.863 37 H 0.088 0.912 38 H 0.262 0.738 39 H 0.120 0.880 40 H 0.149 0.851 41 H 0.054 0.946 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.097 0.903 45 H 0.066 0.934 46 H 0.062 0.938 47 H 0.075 0.925 48 H 0.071 0.929 49 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -18.174 18.025 1.279 25.629 hybrid contribution 0.437 -1.124 -0.441 1.284 sum -17.737 16.901 0.838 24.514 Atomic orbital electron populations 1.24186 0.94355 1.04132 0.94829 1.22931 0.96992 0.97236 1.04889 1.21320 0.91600 0.98292 0.87320 1.46535 1.10197 1.45590 1.11775 1.24614 0.98685 1.02267 0.81620 1.20539 0.89193 0.93609 0.98886 0.83437 1.22140 0.99380 0.90436 0.89107 1.46164 1.50228 1.06402 1.34242 1.21008 0.79733 0.83109 0.85204 1.90755 1.59262 1.33109 1.62940 1.22405 1.01318 0.96914 0.97386 1.73889 0.97900 1.17159 1.26443 1.74638 1.24657 1.18381 1.01510 1.22505 0.85332 1.00756 0.91917 1.58862 1.26642 1.03275 1.29790 1.22133 0.89996 0.95606 0.97453 1.21635 1.00786 0.95332 0.96798 1.21978 0.98869 0.95785 0.99816 1.19037 0.93959 0.92183 0.93870 0.94358 1.21223 1.38125 0.99256 0.97483 0.95515 1.25893 0.94450 0.94737 1.03332 1.70061 1.41432 1.11709 1.35925 0.85776 0.80288 0.77581 0.78417 1.19181 1.15947 1.22981 1.21759 0.97396 0.84922 0.97716 0.84951 0.87422 0.89701 0.84390 0.87237 0.86346 0.91158 0.73813 0.88035 0.85149 0.94642 0.88834 0.88856 0.90254 0.93381 0.93814 0.92511 0.92947 0.95939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 14.32 67.78 0.97 -0.18 16 2 C -0.20 -2.98 9.85 25.65 0.25 -2.73 16 3 C 0.14 1.80 6.31 85.63 0.54 2.34 16 4 N -0.45 -9.66 2.79 -518.90 -1.45 -11.11 16 5 C 0.20 4.05 6.61 137.64 0.91 4.96 16 6 C 0.00 -0.01 3.52 -10.48 -0.04 -0.05 16 7 H 0.15 0.51 7.13 -2.39 -0.02 0.49 16 8 C 0.11 1.22 7.34 86.83 0.64 1.86 16 9 N -0.72 -8.69 6.24 -459.80 -2.87 -11.56 16 10 C 0.52 9.39 8.43 87.90 0.74 10.13 16 11 O -0.58 -15.76 18.03 -3.05 -0.05 -15.82 16 12 C -0.14 -1.85 6.41 30.58 0.20 -1.66 16 13 N -0.31 -9.37 11.77 -49.54 -0.58 -9.95 16 14 N -0.35 -12.25 12.19 -58.01 -0.71 -12.96 16 15 C 0.35 10.73 6.41 260.11 1.67 12.39 16 16 N -0.46 -14.67 4.67 -706.16 -3.30 -17.97 16 17 C 0.07 2.15 5.39 86.32 0.47 2.61 16 18 C -0.11 -3.08 6.09 30.64 0.19 -2.89 16 19 C -0.13 -4.97 4.73 30.67 0.15 -4.82 16 20 C 0.03 1.28 1.85 -11.49 -0.02 1.26 16 21 H 0.04 1.70 7.21 -2.39 -0.02 1.68 16 22 C -0.52 -29.41 9.15 25.60 0.23 -29.17 16 23 H 0.03 1.69 7.99 -2.91 -0.02 1.67 16 24 C 0.01 0.74 5.45 84.66 0.46 1.20 16 25 N -0.95 -59.17 13.96 21.45 0.30 -58.88 16 26 Si 0.95 43.26 24.35 68.60 1.67 44.93 16 27 H -0.27 -11.47 6.89 99.48 0.69 -10.78 16 28 H -0.24 -9.59 6.53 99.48 0.65 -8.94 16 29 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 30 C 0.11 4.42 4.59 86.33 0.40 4.82 16 31 H 0.13 0.25 7.84 -2.91 -0.02 0.23 16 32 H 0.11 0.91 8.06 -2.91 -0.02 0.89 16 33 H 0.08 1.91 8.06 -2.91 -0.02 1.88 16 34 H 0.14 0.63 7.02 -2.39 -0.02 0.61 16 35 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.07 1.10 7.63 -2.39 -0.02 1.09 16 38 H 0.42 3.86 8.96 -92.71 -0.83 3.03 16 39 H 0.10 1.78 7.82 -2.39 -0.02 1.76 16 40 H 0.13 1.15 8.14 -2.38 -0.02 1.13 16 41 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 42 H 0.09 2.19 8.10 -2.39 -0.02 2.17 16 43 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.04 1.77 3.34 -2.39 -0.01 1.76 16 47 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 48 H 0.05 2.22 8.10 -2.38 -0.02 2.20 16 49 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 Total: -1.00 -81.12 391.69 0.81 -80.30 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.06 Total: 12.94 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 7.75 Total: 0.07 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -8.61 Total: -122.43 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.05 Total: -15.82 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.67 Total: 44.93 kcal Total: -81.12 0.81 -80.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338789950.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.816 kcal (2) G-P(sol) polarization free energy of solvation -81.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds