Wall clock time and date at job start Wed Apr 1 2020 03:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 119.99905 * 2 1 4 4 N 1.46504 * 109.47030 * 125.00547 * 3 2 1 5 5 C 1.36742 * 127.13515 * 272.95239 * 4 3 2 6 6 C 1.50699 * 126.34667 * 359.97438 * 5 4 3 7 7 H 1.09001 * 110.85658 * 359.30772 * 6 5 4 8 8 C 1.54481 * 110.97251 * 235.51163 * 6 5 4 9 9 N 1.46822 * 105.44325 * 216.49548 * 8 6 5 10 10 C 1.34422 * 111.31727 * 16.96592 * 9 8 6 11 11 O 1.21277 * 124.93903 * 179.58857 * 10 9 8 12 12 C 1.51272 * 110.11543 * 359.61904 * 10 9 8 13 13 N 1.30294 * 107.30588 * 180.02562 * 5 4 3 14 14 N 1.28533 * 110.04952 * 359.72677 * 13 5 4 15 15 C 1.31219 * 109.86265 * 0.45359 * 14 13 5 16 16 N 1.38569 * 126.47265 * 179.82320 * 15 14 13 17 17 C 1.46843 * 111.00190 * 271.50307 * 16 15 14 18 18 C 1.53033 * 109.52540 * 185.83919 * 17 16 15 19 19 C 1.53123 * 109.28057 * 300.81881 * 18 17 16 20 20 C 1.53117 * 109.15730 * 57.65361 * 19 18 17 21 21 H 1.09000 * 109.53970 * 62.30922 * 20 19 18 22 22 C 1.50700 * 109.50153 * 182.40545 * 20 19 18 23 23 H 1.08005 * 120.00038 * 116.18785 * 22 20 19 24 24 C 1.37881 * 120.00294 * 296.18978 * 22 20 19 25 25 N 1.31511 * 119.99582 * 352.64792 * 24 22 20 26 26 Si 1.86796 * 120.00204 * 172.64904 * 24 22 20 27 27 H 1.48501 * 109.46865 * 265.07493 * 26 24 22 28 28 H 1.48496 * 109.47126 * 145.07877 * 26 24 22 29 29 H 1.48498 * 109.47389 * 25.07278 * 26 24 22 30 30 C 1.46850 * 111.00190 * 35.71112 * 16 15 14 31 31 H 1.07999 * 119.99734 * 179.97438 * 1 2 3 32 32 H 1.08000 * 119.99795 * 359.97438 * 1 2 3 33 33 H 1.08000 * 119.99795 * 180.02562 * 2 1 3 34 34 H 1.08997 * 109.47629 * 5.00535 * 3 2 1 35 35 H 1.08998 * 109.47101 * 245.00286 * 3 2 1 36 36 H 1.09001 * 110.24249 * 335.46809 * 8 6 5 37 37 H 1.08997 * 110.24697 * 97.46863 * 8 6 5 38 38 H 0.96996 * 124.33094 * 196.99913 * 9 8 6 39 39 H 1.09001 * 110.49138 * 225.06856 * 12 10 9 40 40 H 1.09004 * 110.60234 * 102.48617 * 12 10 9 41 41 H 1.08998 * 109.46209 * 305.85492 * 17 16 15 42 42 H 1.08997 * 109.46519 * 65.82953 * 17 16 15 43 43 H 1.09000 * 109.50678 * 60.75930 * 18 17 16 44 44 H 1.08997 * 109.50442 * 180.87660 * 18 17 16 45 45 H 1.09000 * 109.51776 * 297.74973 * 19 18 17 46 46 H 1.09004 * 109.52196 * 177.55752 * 19 18 17 47 47 H 0.96999 * 120.00108 * 180.02562 * 25 24 22 48 48 H 1.09003 * 109.45955 * 54.14258 * 30 16 15 49 49 H 1.09004 * 109.45420 * 294.17401 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.7287 1.7415 2.4087 6 6 1.4104 2.2572 2.9258 7 1 0.6639 2.2791 2.1318 8 6 1.5760 3.6526 3.5676 9 7 0.6565 3.6680 4.7122 10 6 0.2754 2.4239 5.0496 11 8 -0.4743 2.1509 5.9630 12 6 0.9182 1.4140 4.1249 13 7 3.8273 1.6044 3.0957 14 7 4.7597 1.1341 2.3464 15 6 4.3049 0.9536 1.1289 16 7 5.0194 0.4654 0.0467 17 6 5.6939 1.5534 -0.6727 18 6 6.3502 0.9995 -1.9393 19 6 7.3600 -0.0848 -1.5527 20 6 6.6412 -1.1822 -0.7631 21 1 5.8816 -1.6461 -1.3923 22 6 7.6390 -2.2244 -0.3278 23 1 7.8274 -2.3858 0.7234 24 6 8.3114 -2.9718 -1.2714 25 7 7.9805 -2.8796 -2.5409 26 14 9.6922 -4.1151 -0.7467 27 1 10.9944 -3.4153 -0.8868 28 1 9.6860 -5.3259 -1.6064 29 1 9.4940 -4.5130 0.6702 30 6 5.9765 -0.5650 0.4694 31 1 -0.5400 -0.9353 -0.0004 32 1 -0.5400 0.9353 0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 1.3587 2.1316 0.0897 35 1 2.6212 1.4026 -0.9314 36 1 2.6025 3.7924 3.9067 37 1 1.3043 4.4306 2.8542 38 1 0.3616 4.4729 5.1662 39 1 0.1858 0.6762 3.7973 40 1 1.7583 0.9238 4.6168 41 1 4.9641 2.3157 -0.9455 42 1 6.4571 1.9944 -0.0315 43 1 5.5860 0.5705 -2.5874 44 1 6.8639 1.8044 -2.4649 45 1 8.1457 0.3523 -0.9365 46 1 7.7983 -0.5125 -2.4545 47 1 8.4532 -3.4057 -3.2047 48 1 5.4519 -1.3414 1.0263 49 1 6.7383 -0.1138 1.1053 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338789951.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:07 Heat of formation + Delta-G solvation = 71.126101 kcal Electronic energy + Delta-G solvation = -30931.367555 eV Core-core repulsion = 26895.209264 eV Total energy + Delta-G solvation = -4036.158291 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.02309 -40.47208 -38.42915 -36.83977 -36.32614 -34.00155 -32.98273 -32.53494 -31.65903 -30.06332 -28.88312 -27.57811 -26.98628 -25.08108 -23.96750 -23.55887 -21.74375 -21.18577 -20.89383 -20.47549 -20.06409 -18.67531 -17.77304 -17.53955 -16.92311 -16.20966 -16.16962 -15.67662 -15.36461 -15.08927 -14.62619 -14.38622 -14.15396 -14.05845 -13.86561 -13.68679 -13.53606 -13.46159 -12.94152 -12.70565 -12.63423 -12.53016 -12.10048 -11.96235 -11.85061 -11.61204 -11.50573 -10.99524 -10.88445 -10.78995 -10.50490 -10.29875 -10.27035 -10.16378 -10.03271 -9.87105 -9.62497 -9.48376 -9.28311 -9.18565 -8.82259 -8.38407 -8.12616 -6.06642 -4.09059 1.57555 1.75552 2.30264 2.43186 2.83698 3.02886 3.29235 3.36717 3.40753 3.73749 3.99528 4.07429 4.13669 4.34052 4.43265 4.47924 4.51717 4.54819 4.95013 5.01053 5.13233 5.19002 5.21937 5.26131 5.30569 5.44034 5.48612 5.56087 5.61498 5.74020 5.78944 5.88319 6.07372 6.23939 6.26913 6.29932 6.31898 6.40629 6.43844 6.55263 6.62568 6.67047 6.77184 6.96178 7.17215 7.27485 7.60729 7.67998 7.91034 7.91368 7.98897 8.36700 8.81443 8.94554 9.55042 11.02205 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.016589 B = 0.002614 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.502166 B =10709.672167 C =11030.948275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.169 4.169 3 C 0.140 3.860 4 N -0.465 5.465 5 C 0.166 3.834 6 C -0.005 4.005 7 H 0.105 0.895 8 C 0.113 3.887 9 N -0.730 5.730 10 C 0.526 3.474 11 O -0.533 6.533 12 C -0.145 4.145 13 N -0.276 5.276 14 N -0.313 5.313 15 C 0.377 3.623 16 N -0.465 5.465 17 C 0.072 3.928 18 C -0.116 4.116 19 C -0.110 4.110 20 C 0.056 3.944 21 H 0.040 0.960 22 C -0.516 4.516 23 H 0.057 0.943 24 C 0.066 3.934 25 N -0.888 5.888 26 Si 0.889 3.111 27 H -0.281 1.281 28 H -0.287 1.287 29 H -0.273 1.273 30 C 0.083 3.917 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.122 0.878 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.412 0.588 39 H 0.107 0.893 40 H 0.119 0.881 41 H 0.057 0.943 42 H 0.043 0.957 43 H 0.064 0.936 44 H 0.056 0.944 45 H 0.038 0.962 46 H 0.082 0.918 47 H 0.260 0.740 48 H 0.064 0.936 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.129 14.312 2.846 21.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.188 4.188 3 C 0.017 3.983 4 N -0.158 5.158 5 C -0.102 4.102 6 C -0.027 4.027 7 H 0.124 0.876 8 C -0.013 4.013 9 N -0.387 5.387 10 C 0.312 3.688 11 O -0.409 6.409 12 C -0.186 4.186 13 N -0.116 5.116 14 N -0.157 5.157 15 C 0.021 3.979 16 N -0.191 5.191 17 C -0.055 4.055 18 C -0.154 4.154 19 C -0.148 4.148 20 C 0.037 3.963 21 H 0.058 0.942 22 C -0.555 4.555 23 H 0.075 0.925 24 C -0.136 4.136 25 N -0.526 5.526 26 Si 0.717 3.283 27 H -0.207 1.207 28 H -0.213 1.213 29 H -0.198 1.198 30 C -0.042 4.042 31 H 0.124 0.876 32 H 0.116 0.884 33 H 0.140 0.860 34 H 0.111 0.889 35 H 0.130 0.870 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.251 0.749 39 H 0.126 0.874 40 H 0.137 0.863 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.056 0.944 46 H 0.100 0.900 47 H 0.070 0.930 48 H 0.082 0.918 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.775 13.790 3.900 21.312 hybrid contribution 0.378 -0.076 -0.464 0.603 sum -15.396 13.714 3.436 20.903 Atomic orbital electron populations 1.23917 0.95403 1.02434 0.99047 1.23157 0.96124 0.98526 1.00959 1.20942 0.91659 0.96928 0.88734 1.46288 1.09905 1.49505 1.10089 1.23895 0.98313 1.06052 0.81913 1.20244 0.90064 0.94733 0.97656 0.87648 1.22118 0.95229 0.96062 0.87869 1.46192 1.48687 1.08976 1.34815 1.20753 0.79710 0.84296 0.84003 1.90770 1.36477 1.82278 1.31409 1.22430 1.03216 0.98055 0.94859 1.73947 0.96549 1.15367 1.25765 1.74775 1.22173 1.18414 1.00310 1.22852 0.83409 0.98376 0.93269 1.58989 1.29467 1.12533 1.18148 1.22133 0.96243 0.90971 0.96122 1.21698 0.99497 0.99237 0.94939 1.21659 0.96404 0.94638 1.02118 1.18716 0.94678 0.92425 0.90480 0.94160 1.21072 1.22605 1.18744 0.93031 0.92519 1.24903 0.97159 0.96546 0.94955 1.69944 1.40578 1.41411 1.00657 0.86622 0.82699 0.80307 0.78681 1.20689 1.21302 1.19804 1.22416 0.91461 0.90293 1.00035 0.87558 0.88370 0.85976 0.88906 0.87031 0.89320 0.89682 0.74879 0.87423 0.86281 0.92405 0.93861 0.91691 0.92561 0.94356 0.89986 0.92999 0.91768 0.93711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 14.32 29.01 0.42 -0.75 16 2 C -0.17 -1.54 9.85 -36.03 -0.35 -1.89 16 3 C 0.14 1.24 6.29 -5.19 -0.03 1.21 16 4 N -0.46 -5.75 2.79 -115.37 -0.32 -6.07 16 5 C 0.17 1.97 6.60 -154.01 -1.02 0.96 16 6 C -0.01 -0.04 3.54 -90.14 -0.32 -0.36 16 7 H 0.11 0.57 7.12 -51.93 -0.37 0.20 16 8 C 0.11 0.74 7.34 -3.09 -0.02 0.72 16 9 N -0.73 -5.38 6.24 -59.16 -0.37 -5.75 16 10 C 0.53 5.51 8.43 -10.86 -0.09 5.42 16 11 O -0.53 -7.77 18.03 5.56 0.10 -7.67 16 12 C -0.14 -1.31 6.41 -26.74 -0.17 -1.48 16 13 N -0.28 -4.34 11.78 32.99 0.39 -3.95 16 14 N -0.31 -5.71 11.68 30.31 0.35 -5.35 16 15 C 0.38 6.15 6.72 -318.89 -2.14 4.01 16 16 N -0.47 -8.06 4.67 -174.56 -0.82 -8.87 16 17 C 0.07 1.14 5.39 -3.84 -0.02 1.12 16 18 C -0.12 -1.96 6.09 -26.65 -0.16 -2.12 16 19 C -0.11 -2.38 5.07 -26.61 -0.13 -2.51 16 20 C 0.06 1.32 2.15 -91.69 -0.20 1.12 16 21 H 0.04 1.05 8.13 -51.93 -0.42 0.62 16 22 C -0.52 -13.68 8.51 -34.44 -0.29 -13.97 16 23 H 0.06 1.52 7.76 -52.48 -0.41 1.11 16 24 C 0.07 1.78 5.24 -17.82 -0.09 1.68 16 25 N -0.89 -24.46 11.97 55.43 0.66 -23.79 16 26 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 29 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 30 C 0.08 1.74 4.31 -3.83 -0.02 1.72 16 31 H 0.11 0.69 8.06 -52.49 -0.42 0.26 16 32 H 0.10 0.47 7.84 -52.49 -0.41 0.06 16 33 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.09 0.52 7.04 -51.93 -0.37 0.15 16 35 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.09 0.72 7.70 -51.93 -0.40 0.32 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.41 2.32 8.96 -40.82 -0.37 1.95 16 39 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.12 1.28 7.75 -51.93 -0.40 0.88 16 41 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.08 1.99 6.75 -51.93 -0.35 1.64 16 47 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 48 H 0.06 1.40 8.10 -51.93 -0.42 0.98 16 49 H 0.04 0.98 8.06 -51.93 -0.42 0.56 16 LS Contribution 399.05 15.07 6.01 6.01 Total: -1.00 -32.47 399.05 -11.36 -43.83 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -7.70 Total: 0.91 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -4.65 Total: -5.14 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.10 Total: -53.79 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: 0.10 Total: -7.67 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.47 -11.36 -43.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338789951.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.954 kcal (2) G-P(sol) polarization free energy of solvation -32.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds