Wall clock time and date at job start Wed Apr 1 2020 03:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 119.99905 * 2 1 4 4 N 1.46504 * 109.47030 * 125.00547 * 3 2 1 5 5 C 1.36742 * 127.13515 * 272.95239 * 4 3 2 6 6 C 1.50699 * 126.34667 * 359.97438 * 5 4 3 7 7 H 1.09001 * 110.85658 * 359.30772 * 6 5 4 8 8 C 1.54481 * 110.97251 * 235.51163 * 6 5 4 9 9 N 1.46822 * 105.44325 * 216.49548 * 8 6 5 10 10 C 1.34422 * 111.31727 * 16.96592 * 9 8 6 11 11 O 1.21277 * 124.93903 * 179.58857 * 10 9 8 12 12 C 1.51272 * 110.11543 * 359.61904 * 10 9 8 13 13 N 1.30294 * 107.30588 * 180.02562 * 5 4 3 14 14 N 1.28533 * 110.04952 * 359.72677 * 13 5 4 15 15 C 1.31219 * 109.86265 * 0.45359 * 14 13 5 16 16 N 1.38569 * 126.47265 * 179.82320 * 15 14 13 17 17 C 1.46843 * 111.00190 * 271.50307 * 16 15 14 18 18 C 1.53033 * 109.52540 * 185.83919 * 17 16 15 19 19 C 1.53123 * 109.28057 * 300.81881 * 18 17 16 20 20 C 1.53117 * 109.15730 * 57.65361 * 19 18 17 21 21 H 1.09000 * 109.53970 * 62.30922 * 20 19 18 22 22 C 1.50700 * 109.50153 * 182.40545 * 20 19 18 23 23 H 1.08005 * 120.00038 * 116.18785 * 22 20 19 24 24 C 1.37881 * 120.00294 * 296.18978 * 22 20 19 25 25 N 1.31511 * 119.99582 * 352.64792 * 24 22 20 26 26 Si 1.86796 * 120.00204 * 172.64904 * 24 22 20 27 27 H 1.48501 * 109.46865 * 265.07493 * 26 24 22 28 28 H 1.48496 * 109.47126 * 145.07877 * 26 24 22 29 29 H 1.48498 * 109.47389 * 25.07278 * 26 24 22 30 30 C 1.46850 * 111.00190 * 35.71112 * 16 15 14 31 31 H 1.07999 * 119.99734 * 179.97438 * 1 2 3 32 32 H 1.08000 * 119.99795 * 359.97438 * 1 2 3 33 33 H 1.08000 * 119.99795 * 180.02562 * 2 1 3 34 34 H 1.08997 * 109.47629 * 5.00535 * 3 2 1 35 35 H 1.08998 * 109.47101 * 245.00286 * 3 2 1 36 36 H 1.09001 * 110.24249 * 335.46809 * 8 6 5 37 37 H 1.08997 * 110.24697 * 97.46863 * 8 6 5 38 38 H 0.96996 * 124.33094 * 196.99913 * 9 8 6 39 39 H 1.09001 * 110.49138 * 225.06856 * 12 10 9 40 40 H 1.09004 * 110.60234 * 102.48617 * 12 10 9 41 41 H 1.08998 * 109.46209 * 305.85492 * 17 16 15 42 42 H 1.08997 * 109.46519 * 65.82953 * 17 16 15 43 43 H 1.09000 * 109.50678 * 60.75930 * 18 17 16 44 44 H 1.08997 * 109.50442 * 180.87660 * 18 17 16 45 45 H 1.09000 * 109.51776 * 297.74973 * 19 18 17 46 46 H 1.09004 * 109.52196 * 177.55752 * 19 18 17 47 47 H 0.96999 * 120.00108 * 180.02562 * 25 24 22 48 48 H 1.09003 * 109.45955 * 54.14258 * 30 16 15 49 49 H 1.09004 * 109.45420 * 294.17401 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.7287 1.7415 2.4087 6 6 1.4104 2.2572 2.9258 7 1 0.6639 2.2791 2.1318 8 6 1.5760 3.6526 3.5676 9 7 0.6565 3.6680 4.7122 10 6 0.2754 2.4239 5.0496 11 8 -0.4743 2.1509 5.9630 12 6 0.9182 1.4140 4.1249 13 7 3.8273 1.6044 3.0957 14 7 4.7597 1.1341 2.3464 15 6 4.3049 0.9536 1.1289 16 7 5.0194 0.4654 0.0467 17 6 5.6939 1.5534 -0.6727 18 6 6.3502 0.9995 -1.9393 19 6 7.3600 -0.0848 -1.5527 20 6 6.6412 -1.1822 -0.7631 21 1 5.8816 -1.6461 -1.3923 22 6 7.6390 -2.2244 -0.3278 23 1 7.8274 -2.3858 0.7234 24 6 8.3114 -2.9718 -1.2714 25 7 7.9805 -2.8796 -2.5409 26 14 9.6922 -4.1151 -0.7467 27 1 10.9944 -3.4153 -0.8868 28 1 9.6860 -5.3259 -1.6064 29 1 9.4940 -4.5130 0.6702 30 6 5.9765 -0.5650 0.4694 31 1 -0.5400 -0.9353 -0.0004 32 1 -0.5400 0.9353 0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 1.3587 2.1316 0.0897 35 1 2.6212 1.4026 -0.9314 36 1 2.6025 3.7924 3.9067 37 1 1.3043 4.4306 2.8542 38 1 0.3616 4.4729 5.1662 39 1 0.1858 0.6762 3.7973 40 1 1.7583 0.9238 4.6168 41 1 4.9641 2.3157 -0.9455 42 1 6.4571 1.9944 -0.0315 43 1 5.5860 0.5705 -2.5874 44 1 6.8639 1.8044 -2.4649 45 1 8.1457 0.3523 -0.9365 46 1 7.7983 -0.5125 -2.4545 47 1 8.4532 -3.4057 -3.2047 48 1 5.4519 -1.3414 1.0263 49 1 6.7383 -0.1138 1.1053 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338789951.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:06 Heat of formation + Delta-G solvation = 50.767727 kcal Electronic energy + Delta-G solvation = -30932.250360 eV Core-core repulsion = 26895.209264 eV Total energy + Delta-G solvation = -4037.041097 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.11410 -41.24482 -39.92175 -37.69750 -37.14297 -35.70893 -33.91994 -33.78083 -32.80417 -31.81773 -29.90100 -28.41318 -27.73917 -27.00933 -25.42014 -24.42774 -23.29933 -22.34207 -21.62710 -21.46988 -20.80353 -20.26361 -18.84225 -18.41511 -18.22925 -17.51954 -17.17890 -16.94444 -16.50562 -16.11831 -15.90114 -15.65605 -15.22569 -15.17362 -14.77902 -14.64452 -14.51642 -14.45469 -14.23137 -14.21568 -14.09393 -13.53466 -13.34455 -12.86377 -12.80457 -12.72227 -12.65912 -12.59705 -12.51166 -12.33071 -11.98505 -11.82761 -11.66197 -11.38575 -11.16671 -11.10975 -11.03866 -10.79847 -10.48987 -10.43545 -10.31020 -10.14194 -9.49774 -8.14191 -6.22941 0.60229 0.94512 1.39897 1.41928 1.48519 1.51407 1.57771 1.71912 2.37713 2.42051 2.73814 2.99397 3.16449 3.41441 3.48267 3.63522 3.82354 3.85995 3.88888 3.92382 4.10059 4.16021 4.30439 4.38705 4.47210 4.51725 4.56055 4.58884 4.60090 4.64642 4.78465 4.80178 4.85648 4.94091 4.98015 5.01119 5.05898 5.08109 5.29280 5.40071 5.55455 5.62641 5.64529 5.71661 5.76852 5.77984 5.97381 5.99052 6.03433 6.30931 6.36674 6.86464 7.19564 7.43744 7.68609 8.93856 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.016589 B = 0.002614 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.502166 B =10709.672167 C =11030.948275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.201 4.201 3 C 0.135 3.865 4 N -0.454 5.454 5 C 0.194 3.806 6 C 0.000 4.000 7 H 0.148 0.852 8 C 0.116 3.884 9 N -0.714 5.714 10 C 0.524 3.476 11 O -0.581 6.581 12 C -0.142 4.142 13 N -0.314 5.314 14 N -0.355 5.355 15 C 0.358 3.642 16 N -0.461 5.461 17 C 0.076 3.924 18 C -0.104 4.104 19 C -0.104 4.104 20 C 0.059 3.941 21 H 0.010 0.990 22 C -0.539 4.539 23 H 0.045 0.955 24 C 0.024 3.976 25 N -0.911 5.911 26 Si 0.947 3.053 27 H -0.274 1.274 28 H -0.281 1.281 29 H -0.274 1.274 30 C 0.106 3.894 31 H 0.107 0.893 32 H 0.134 0.866 33 H 0.083 0.917 34 H 0.142 0.858 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.128 0.872 38 H 0.423 0.577 39 H 0.121 0.879 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.033 0.967 43 H 0.065 0.935 44 H 0.086 0.914 45 H 0.029 0.971 46 H 0.053 0.947 47 H 0.262 0.738 48 H 0.043 0.957 49 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.560 16.855 1.923 25.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.220 4.220 3 C 0.015 3.985 4 N -0.146 5.146 5 C -0.074 4.074 6 C -0.021 4.021 7 H 0.166 0.834 8 C -0.009 4.009 9 N -0.369 5.369 10 C 0.311 3.689 11 O -0.461 6.461 12 C -0.183 4.183 13 N -0.153 5.153 14 N -0.199 5.199 15 C 0.000 4.000 16 N -0.186 5.186 17 C -0.051 4.051 18 C -0.142 4.142 19 C -0.142 4.142 20 C 0.040 3.960 21 H 0.028 0.972 22 C -0.578 4.578 23 H 0.063 0.937 24 C -0.176 4.176 25 N -0.549 5.549 26 Si 0.773 3.227 27 H -0.200 1.200 28 H -0.207 1.207 29 H -0.198 1.198 30 C -0.021 4.021 31 H 0.125 0.875 32 H 0.152 0.848 33 H 0.101 0.899 34 H 0.159 0.841 35 H 0.125 0.875 36 H 0.091 0.909 37 H 0.146 0.854 38 H 0.263 0.737 39 H 0.140 0.860 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.051 0.949 43 H 0.084 0.916 44 H 0.104 0.896 45 H 0.048 0.952 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.061 0.939 49 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -18.206 16.374 2.952 24.664 hybrid contribution 1.021 -0.870 -0.148 1.350 sum -17.185 15.504 2.804 23.314 Atomic orbital electron populations 1.24189 0.94354 1.04170 0.94910 1.22927 0.96960 0.97333 1.04806 1.21320 0.91647 0.98336 0.87208 1.46458 1.08781 1.48214 1.11194 1.24598 0.98586 1.03060 0.81187 1.20533 0.88497 0.94821 0.98275 0.83438 1.22216 0.94311 0.96309 0.88052 1.46146 1.47645 1.08483 1.34660 1.20914 0.79166 0.85352 0.83479 1.90749 1.38833 1.83103 1.33433 1.22368 1.02668 0.98278 0.95033 1.73870 0.97687 1.17279 1.26500 1.74658 1.24228 1.19605 1.01432 1.22637 0.84950 0.99878 0.92515 1.58862 1.28495 1.12624 1.18637 1.22176 0.96939 0.91052 0.94918 1.21582 0.98376 0.98452 0.95806 1.21466 0.97183 0.95392 1.00154 1.18574 0.93583 0.92642 0.91185 0.97178 1.21403 1.23703 1.20032 0.92618 0.93700 1.25570 0.99058 0.97950 0.95012 1.70040 1.41397 1.42133 1.01359 0.85717 0.80146 0.78665 0.78199 1.20001 1.20663 1.19836 1.21883 0.91390 0.90806 0.98031 0.87503 0.84832 0.89860 0.84071 0.87451 0.90903 0.85438 0.73673 0.86034 0.88530 0.88529 0.94862 0.91624 0.89602 0.95234 0.92855 0.92846 0.93876 0.95452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 14.32 67.78 0.97 -0.36 16 2 C -0.20 -3.24 9.85 25.64 0.25 -2.98 16 3 C 0.14 1.92 6.29 85.63 0.54 2.46 16 4 N -0.45 -10.31 2.79 -518.92 -1.45 -11.76 16 5 C 0.19 4.21 6.60 137.64 0.91 5.12 16 6 C 0.00 0.00 3.54 -10.48 -0.04 -0.04 16 7 H 0.15 0.58 7.12 -2.39 -0.02 0.56 16 8 C 0.12 1.05 7.34 86.82 0.64 1.69 16 9 N -0.71 -8.37 6.24 -459.69 -2.87 -11.24 16 10 C 0.52 10.03 8.43 87.89 0.74 10.77 16 11 O -0.58 -16.59 18.03 -3.02 -0.05 -16.64 16 12 C -0.14 -2.29 6.41 30.59 0.20 -2.09 16 13 N -0.31 -9.82 11.78 -49.54 -0.58 -10.40 16 14 N -0.36 -13.25 11.68 -58.01 -0.68 -13.93 16 15 C 0.36 11.65 6.72 260.12 1.75 13.39 16 16 N -0.46 -16.19 4.67 -706.18 -3.30 -19.48 16 17 C 0.08 2.30 5.39 86.33 0.47 2.77 16 18 C -0.10 -3.45 6.09 30.65 0.19 -3.27 16 19 C -0.10 -4.62 5.07 30.67 0.16 -4.47 16 20 C 0.06 2.93 2.15 -11.49 -0.02 2.91 16 21 H 0.01 0.55 8.13 -2.39 -0.02 0.53 16 22 C -0.54 -29.98 8.51 25.60 0.22 -29.77 16 23 H 0.04 2.53 7.76 -2.91 -0.02 2.51 16 24 C 0.02 1.31 5.24 84.66 0.44 1.76 16 25 N -0.91 -51.63 11.97 21.45 0.26 -51.37 16 26 Si 0.95 43.81 29.54 68.60 2.03 45.83 16 27 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 28 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 29 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 30 C 0.11 4.66 4.31 86.32 0.37 5.04 16 31 H 0.11 1.04 8.06 -2.91 -0.02 1.02 16 32 H 0.13 0.38 7.84 -2.91 -0.02 0.36 16 33 H 0.08 1.99 8.06 -2.91 -0.02 1.96 16 34 H 0.14 0.64 7.04 -2.39 -0.02 0.62 16 35 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.07 0.98 7.70 -2.39 -0.02 0.96 16 37 H 0.13 0.21 8.14 -2.39 -0.02 0.20 16 38 H 0.42 3.50 8.96 -92.71 -0.83 2.67 16 39 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.10 2.06 7.75 -2.39 -0.02 2.04 16 41 H 0.10 2.25 8.10 -2.39 -0.02 2.23 16 42 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.05 2.67 6.75 -2.39 -0.02 2.65 16 47 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 48 H 0.04 2.03 8.10 -2.39 -0.02 2.01 16 49 H 0.03 1.28 8.06 -2.39 -0.02 1.26 16 Total: -1.00 -77.75 399.05 1.25 -76.49 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 0.13 Total: 9.57 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 7.77 Total: 2.92 kcal Atomic # 7 Polarization: -109.56 SS G_CDS: -8.62 Total: -118.18 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.05 Total: -16.64 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -77.75 1.25 -76.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338789951.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.263 kcal (2) G-P(sol) polarization free energy of solvation -77.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds