Wall clock time and date at job start Wed Apr 1 2020 03:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46898 * 109.47227 * 108.26446 * 3 2 1 5 5 C 1.46960 * 111.00475 * 189.99844 * 4 3 2 6 6 C 1.53054 * 109.36489 * 183.18683 * 5 4 3 7 7 N 1.46952 * 109.36478 * 301.59724 * 6 5 4 8 8 C 1.38579 * 110.99885 * 183.18699 * 7 6 5 9 9 N 1.31221 * 126.47539 * 295.07114 * 8 7 6 10 10 N 1.28533 * 109.85988 * 179.97438 * 9 8 7 11 11 C 1.30301 * 110.05330 * 0.02562 * 10 9 8 12 12 C 1.50693 * 126.34566 * 179.97438 * 11 10 9 13 13 C 1.53008 * 109.46945 * 90.02053 * 12 11 10 14 14 H 1.08997 * 109.46742 * 55.00559 * 13 12 11 15 15 O 1.42896 * 109.47244 * 294.99813 * 13 12 11 16 16 C 1.50708 * 109.46908 * 175.00018 * 13 12 11 17 17 H 1.08002 * 119.99913 * 359.97438 * 16 13 12 18 18 C 1.37877 * 119.99946 * 180.02562 * 16 13 12 19 19 N 1.31517 * 119.99745 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99823 * 180.02562 * 18 16 13 21 21 H 1.48496 * 109.47337 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.46970 * 120.00274 * 20 18 16 23 23 H 1.48506 * 109.46613 * 239.99941 * 20 18 16 24 24 N 1.36455 * 126.47038 * 115.38267 * 8 7 6 25 25 C 1.46497 * 127.14217 * 0.02562 * 24 8 7 26 26 C 1.50700 * 109.47233 * 275.38297 * 25 24 8 27 27 C 1.31001 * 120.00160 * 124.99477 * 26 25 24 28 28 C 1.46962 * 110.87824 * 59.32494 * 7 6 5 29 29 C 1.46966 * 111.00052 * 313.79941 * 4 3 2 30 30 H 4.40885 * 5.52199 * 180.02562 * 4 1 2 31 31 H 1.08999 * 109.47676 * 348.26426 * 3 2 1 32 32 H 1.09002 * 109.47222 * 228.26117 * 3 2 1 33 33 H 1.08997 * 109.48692 * 63.21878 * 5 4 3 34 34 H 1.08996 * 109.48460 * 303.15421 * 5 4 3 35 35 H 1.08996 * 109.48597 * 181.62947 * 6 5 4 36 36 H 1.08998 * 109.50469 * 61.57842 * 6 5 4 37 37 H 1.08998 * 109.47225 * 330.02507 * 12 11 10 38 38 H 1.08996 * 109.47306 * 210.01854 * 12 11 10 39 39 H 0.96699 * 114.00092 * 299.99818 * 15 13 12 40 40 H 0.96995 * 120.00201 * 359.97438 * 19 18 16 41 41 H 1.09007 * 109.46711 * 35.37641 * 25 24 8 42 42 H 1.08995 * 109.47679 * 155.37321 * 25 24 8 43 43 H 1.07995 * 119.99869 * 304.99636 * 26 25 24 44 44 H 1.07995 * 119.99971 * 0.02562 * 27 26 25 45 45 H 1.08002 * 119.99752 * 180.02562 * 27 26 25 46 46 H 1.08997 * 109.49049 * 60.64517 * 28 7 6 47 47 H 1.09005 * 109.48691 * 180.71192 * 28 7 6 48 48 H 1.08998 * 109.48780 * 296.77652 * 29 4 3 49 49 H 1.09002 * 109.48650 * 56.84005 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1354 0.4349 -1.3152 5 6 4.5850 0.2239 -1.4338 6 6 5.0672 0.7607 -2.7835 7 7 4.3478 0.0747 -3.8659 8 6 4.8095 0.4845 -5.1066 9 7 4.7103 1.6893 -5.6169 10 7 5.2462 1.7142 -6.7850 11 6 5.7147 0.5364 -7.0868 12 6 6.4148 0.1546 -8.3655 13 6 7.9203 0.3786 -8.2091 14 1 8.2801 -0.1672 -7.3370 15 8 8.1791 1.7736 -8.0385 16 6 8.6325 -0.1174 -9.4412 17 1 8.0679 -0.5496 -10.2541 18 6 10.0050 -0.0204 -9.5300 19 7 10.6926 0.5045 -8.5394 20 14 10.8878 -0.6346 -11.0574 21 1 9.8945 -1.1774 -12.0186 22 1 11.6251 0.4892 -11.6885 23 1 11.8455 -1.7046 -10.6789 24 7 5.4479 -0.2903 -6.0308 25 6 5.7814 -1.7121 -5.9146 26 6 7.0869 -1.8632 -5.1770 27 6 7.1517 -2.6177 -4.1081 28 6 2.8983 0.2859 -3.7473 29 6 2.4160 -0.2510 -2.3977 30 1 -1.0501 0.0001 0.0002 31 1 3.0098 -1.0053 0.2090 32 1 3.0090 0.6850 0.7668 33 1 4.8039 -0.8418 -1.3669 34 1 5.0962 0.7517 -0.6288 35 1 6.1371 0.5791 -2.8857 36 1 4.8732 1.8318 -2.8395 37 1 6.0390 0.7697 -9.1831 38 1 6.2246 -0.8961 -8.5840 39 1 7.8845 2.3217 -8.7786 40 1 10.2342 0.8237 -7.7465 41 1 4.9925 -2.2266 -5.3659 42 1 5.8741 -2.1462 -6.9101 43 1 7.9689 -1.3495 -5.5298 44 1 6.2698 -3.1317 -3.7556 45 1 8.0873 -2.7256 -3.5793 46 1 2.6794 1.3515 -3.8141 47 1 2.3869 -0.2420 -4.5524 48 1 2.6103 -1.3220 -2.3419 49 1 1.3461 -0.0693 -2.2954 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340316671.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:59 Heat of formation + Delta-G solvation = 124.769044 kcal Electronic energy + Delta-G solvation = -30881.668350 eV Core-core repulsion = 26847.836192 eV Total energy + Delta-G solvation = -4033.832159 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.65823 -39.64703 -36.60207 -36.26219 -35.85012 -33.21328 -32.65617 -32.16177 -31.35669 -31.17662 -29.10288 -27.47782 -26.66826 -24.91675 -24.51565 -23.96985 -21.92709 -21.42699 -20.81382 -19.83846 -19.56315 -18.50676 -17.63155 -17.29984 -16.44029 -16.16047 -15.53202 -15.32838 -15.24351 -15.21626 -15.06495 -14.61327 -14.31002 -13.96269 -13.81873 -13.74653 -13.51302 -13.25397 -12.97038 -12.65206 -12.45240 -12.36715 -11.82654 -11.59756 -11.53790 -11.41742 -11.35948 -11.31670 -11.03700 -10.80878 -10.79029 -10.56884 -10.28772 -10.20167 -10.17276 -9.87145 -9.59839 -9.50219 -8.89281 -8.67534 -8.61466 -8.53395 -8.02556 -6.41861 -4.27152 1.88642 2.10095 2.30953 2.47541 2.65271 3.23650 3.38596 3.41959 3.54805 3.63433 3.73163 3.95821 4.44607 4.48617 4.70671 4.76795 4.79345 4.85078 4.88885 4.94968 5.06210 5.14115 5.14928 5.19279 5.23592 5.26712 5.39723 5.42861 5.47532 5.52163 5.57222 5.62127 5.71317 5.80945 5.90157 5.97298 6.15500 6.21481 6.29497 6.44998 6.47583 6.53944 6.55950 6.62271 6.68586 6.86557 7.23340 7.32478 7.42674 7.88263 8.27773 8.78026 9.10651 9.13289 9.59594 10.97814 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.022971 B = 0.002470 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.647229 B =11333.145373 C =11744.340817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.184 4.184 3 C 0.163 3.837 4 N -0.536 5.536 5 C 0.061 3.939 6 C 0.070 3.930 7 N -0.460 5.460 8 C 0.323 3.677 9 N -0.309 5.309 10 N -0.287 5.287 11 C 0.217 3.783 12 C -0.058 4.058 13 C 0.225 3.775 14 H 0.045 0.955 15 O -0.575 6.575 16 C -0.651 4.651 17 H 0.053 0.947 18 C 0.036 3.964 19 N -0.890 5.890 20 Si 1.072 2.928 21 H -0.289 1.289 22 H -0.286 1.286 23 H -0.287 1.287 24 N -0.462 5.462 25 C 0.144 3.856 26 C -0.170 4.170 27 C -0.164 4.164 28 C 0.069 3.931 29 C 0.059 3.941 30 H 0.218 0.782 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.048 0.952 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.358 0.642 40 H 0.285 0.715 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.120 0.880 44 H 0.097 0.903 45 H 0.102 0.898 46 H 0.063 0.937 47 H 0.079 0.921 48 H 0.044 0.956 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.258 -7.317 15.657 23.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.185 4.185 3 C 0.036 3.964 4 N -0.261 5.261 5 C -0.067 4.067 6 C -0.058 4.058 7 N -0.186 5.186 8 C -0.033 4.033 9 N -0.153 5.153 10 N -0.127 5.127 11 C -0.050 4.050 12 C -0.098 4.098 13 C 0.166 3.834 14 H 0.063 0.937 15 O -0.379 6.379 16 C -0.689 4.689 17 H 0.071 0.929 18 C -0.174 4.174 19 N -0.524 5.524 20 Si 0.900 3.100 21 H -0.215 1.215 22 H -0.212 1.212 23 H -0.213 1.213 24 N -0.155 5.155 25 C 0.021 3.979 26 C -0.188 4.188 27 C -0.202 4.202 28 C -0.058 4.058 29 C -0.069 4.069 30 H 0.235 0.765 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.066 0.934 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.204 0.796 40 H 0.096 0.904 41 H 0.115 0.885 42 H 0.121 0.879 43 H 0.138 0.862 44 H 0.116 0.884 45 H 0.121 0.879 46 H 0.082 0.918 47 H 0.097 0.903 48 H 0.062 0.938 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.872 -6.240 15.433 22.322 hybrid contribution -1.558 -1.252 0.330 2.026 sum -16.430 -7.492 15.762 23.969 Atomic orbital electron populations 1.24939 0.95933 1.00963 0.99482 1.22794 0.94229 1.00465 1.00982 1.19073 0.84829 1.00156 0.92292 1.62287 1.04392 1.57820 1.01605 1.22201 0.87130 1.00117 0.97243 1.22184 0.98001 0.97690 0.87902 1.58736 1.05319 1.57133 0.97386 1.22051 1.01969 0.87571 0.91670 1.74521 1.19754 1.16138 1.04910 1.74055 1.13472 1.17778 1.07345 1.25342 1.00096 0.86886 0.92637 1.21086 0.98775 1.01662 0.88290 1.19458 0.85994 0.80720 0.97193 0.93707 1.86486 1.85063 1.19554 1.46815 1.22440 0.94887 1.47449 1.04126 0.92856 1.25788 0.94739 0.94238 1.02586 1.70580 1.40131 1.34674 1.07061 0.83528 0.75358 0.76503 0.74609 1.21476 1.21218 1.21330 1.46338 1.43902 1.10884 1.14348 1.20867 0.96144 0.78103 1.02774 1.23169 0.97883 1.00325 0.97453 1.23818 1.01892 0.98494 0.96000 1.22192 0.85147 1.01591 0.96898 1.22232 0.98744 0.96319 0.89596 0.76519 0.92256 0.88147 0.93383 0.89284 0.89813 0.91912 0.89013 0.90342 0.79633 0.90357 0.88524 0.87905 0.86245 0.88434 0.87926 0.91847 0.90258 0.93787 0.89438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.45 19.05 29.55 0.56 -0.89 16 2 C -0.18 -1.57 11.54 -37.13 -0.43 -2.00 16 3 C 0.16 1.23 5.78 -6.61 -0.04 1.19 16 4 N -0.54 -5.00 4.84 -237.97 -1.15 -6.15 16 5 C 0.06 0.55 5.58 -3.76 -0.02 0.52 16 6 C 0.07 0.85 5.55 -3.77 -0.02 0.83 16 7 N -0.46 -6.06 4.73 -174.36 -0.82 -6.88 16 8 C 0.32 5.46 6.46 -318.87 -2.06 3.40 16 9 N -0.31 -6.21 12.17 30.32 0.37 -5.84 16 10 N -0.29 -6.19 12.18 32.99 0.40 -5.79 16 11 C 0.22 4.27 7.09 -154.01 -1.09 3.18 16 12 C -0.06 -1.15 5.20 -27.88 -0.15 -1.29 16 13 C 0.22 5.41 2.42 -27.88 -0.07 5.34 16 14 H 0.05 1.17 7.18 -51.93 -0.37 0.79 16 15 O -0.57 -14.66 11.77 -35.23 -0.41 -15.07 16 16 C -0.65 -17.12 8.76 -34.44 -0.30 -17.42 16 17 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 18 C 0.04 0.98 5.40 -17.82 -0.10 0.89 16 19 N -0.89 -26.51 13.53 55.43 0.75 -25.76 16 20 Si 1.07 24.27 29.90 -169.99 -5.08 19.18 16 21 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 24 N -0.46 -7.77 2.79 -115.37 -0.32 -8.09 16 25 C 0.14 1.93 6.50 -5.20 -0.03 1.89 16 26 C -0.17 -2.34 9.85 -36.03 -0.35 -2.69 16 27 C -0.16 -1.81 14.32 29.01 0.42 -1.39 16 28 C 0.07 0.82 5.50 -3.77 -0.02 0.80 16 29 C 0.06 0.57 5.18 -3.76 -0.02 0.55 16 30 H 0.22 0.91 7.80 -54.09 -0.42 0.49 16 31 H 0.06 0.38 8.08 -51.93 -0.42 -0.03 16 32 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 1.09 8.13 -51.93 -0.42 0.66 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 38 H 0.08 1.40 7.17 -51.93 -0.37 1.03 16 39 H 0.36 8.35 9.04 45.56 0.41 8.76 16 40 H 0.28 8.69 6.47 -40.82 -0.26 8.43 16 41 H 0.10 1.09 7.79 -51.93 -0.40 0.68 16 42 H 0.10 1.31 7.10 -51.93 -0.37 0.94 16 43 H 0.12 2.03 7.24 -52.49 -0.38 1.65 16 44 H 0.10 0.90 7.84 -52.49 -0.41 0.49 16 45 H 0.10 1.06 8.06 -52.49 -0.42 0.63 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.08 0.91 8.13 -51.93 -0.42 0.49 16 48 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.09 0.81 6.51 -51.93 -0.34 0.48 16 LS Contribution 408.70 15.07 6.16 6.16 Total: -1.00 -33.40 408.70 -10.61 -44.01 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -6.77 Total: 11.34 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -3.72 Total: -7.11 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -0.78 Total: -58.51 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.41 Total: -15.07 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -5.08 Total: 19.18 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.40 -10.61 -44.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340316671.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.779 kcal (2) G-P(sol) polarization free energy of solvation -33.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds