Wall clock time and date at job start Wed Apr 1 2020 03:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46898 * 109.47227 * 108.26446 * 3 2 1 5 5 C 1.46960 * 111.00475 * 189.99844 * 4 3 2 6 6 C 1.53054 * 109.36489 * 183.18683 * 5 4 3 7 7 N 1.46952 * 109.36478 * 301.59724 * 6 5 4 8 8 C 1.38579 * 110.99885 * 183.18699 * 7 6 5 9 9 N 1.31221 * 126.47539 * 295.07114 * 8 7 6 10 10 N 1.28533 * 109.85988 * 179.97438 * 9 8 7 11 11 C 1.30301 * 110.05330 * 0.02562 * 10 9 8 12 12 C 1.50693 * 126.34566 * 179.97438 * 11 10 9 13 13 C 1.53008 * 109.46945 * 90.02053 * 12 11 10 14 14 H 1.08997 * 109.46742 * 55.00559 * 13 12 11 15 15 O 1.42896 * 109.47244 * 294.99813 * 13 12 11 16 16 C 1.50708 * 109.46908 * 175.00018 * 13 12 11 17 17 H 1.08002 * 119.99913 * 359.97438 * 16 13 12 18 18 C 1.37877 * 119.99946 * 180.02562 * 16 13 12 19 19 N 1.31517 * 119.99745 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99823 * 180.02562 * 18 16 13 21 21 H 1.48496 * 109.47337 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.46970 * 120.00274 * 20 18 16 23 23 H 1.48506 * 109.46613 * 239.99941 * 20 18 16 24 24 N 1.36455 * 126.47038 * 115.38267 * 8 7 6 25 25 C 1.46497 * 127.14217 * 0.02562 * 24 8 7 26 26 C 1.50700 * 109.47233 * 275.38297 * 25 24 8 27 27 C 1.31001 * 120.00160 * 124.99477 * 26 25 24 28 28 C 1.46962 * 110.87824 * 59.32494 * 7 6 5 29 29 C 1.46966 * 111.00052 * 313.79941 * 4 3 2 30 30 H 4.40885 * 5.52199 * 180.02562 * 4 1 2 31 31 H 1.08999 * 109.47676 * 348.26426 * 3 2 1 32 32 H 1.09002 * 109.47222 * 228.26117 * 3 2 1 33 33 H 1.08997 * 109.48692 * 63.21878 * 5 4 3 34 34 H 1.08996 * 109.48460 * 303.15421 * 5 4 3 35 35 H 1.08996 * 109.48597 * 181.62947 * 6 5 4 36 36 H 1.08998 * 109.50469 * 61.57842 * 6 5 4 37 37 H 1.08998 * 109.47225 * 330.02507 * 12 11 10 38 38 H 1.08996 * 109.47306 * 210.01854 * 12 11 10 39 39 H 0.96699 * 114.00092 * 299.99818 * 15 13 12 40 40 H 0.96995 * 120.00201 * 359.97438 * 19 18 16 41 41 H 1.09007 * 109.46711 * 35.37641 * 25 24 8 42 42 H 1.08995 * 109.47679 * 155.37321 * 25 24 8 43 43 H 1.07995 * 119.99869 * 304.99636 * 26 25 24 44 44 H 1.07995 * 119.99971 * 0.02562 * 27 26 25 45 45 H 1.08002 * 119.99752 * 180.02562 * 27 26 25 46 46 H 1.08997 * 109.49049 * 60.64517 * 28 7 6 47 47 H 1.09005 * 109.48691 * 180.71192 * 28 7 6 48 48 H 1.08998 * 109.48780 * 296.77652 * 29 4 3 49 49 H 1.09002 * 109.48650 * 56.84005 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1354 0.4349 -1.3152 5 6 4.5850 0.2239 -1.4338 6 6 5.0672 0.7607 -2.7835 7 7 4.3478 0.0747 -3.8659 8 6 4.8095 0.4845 -5.1066 9 7 4.7103 1.6893 -5.6169 10 7 5.2462 1.7142 -6.7850 11 6 5.7147 0.5364 -7.0868 12 6 6.4148 0.1546 -8.3655 13 6 7.9203 0.3786 -8.2091 14 1 8.2801 -0.1672 -7.3370 15 8 8.1791 1.7736 -8.0385 16 6 8.6325 -0.1174 -9.4412 17 1 8.0679 -0.5496 -10.2541 18 6 10.0050 -0.0204 -9.5300 19 7 10.6926 0.5045 -8.5394 20 14 10.8878 -0.6346 -11.0574 21 1 9.8945 -1.1774 -12.0186 22 1 11.6251 0.4892 -11.6885 23 1 11.8455 -1.7046 -10.6789 24 7 5.4479 -0.2903 -6.0308 25 6 5.7814 -1.7121 -5.9146 26 6 7.0869 -1.8632 -5.1770 27 6 7.1517 -2.6177 -4.1081 28 6 2.8983 0.2859 -3.7473 29 6 2.4160 -0.2510 -2.3977 30 1 -1.0501 0.0001 0.0002 31 1 3.0098 -1.0053 0.2090 32 1 3.0090 0.6850 0.7668 33 1 4.8039 -0.8418 -1.3669 34 1 5.0962 0.7517 -0.6288 35 1 6.1371 0.5791 -2.8857 36 1 4.8732 1.8318 -2.8395 37 1 6.0390 0.7697 -9.1831 38 1 6.2246 -0.8961 -8.5840 39 1 7.8845 2.3217 -8.7786 40 1 10.2342 0.8237 -7.7465 41 1 4.9925 -2.2266 -5.3659 42 1 5.8741 -2.1462 -6.9101 43 1 7.9689 -1.3495 -5.5298 44 1 6.2698 -3.1317 -3.7556 45 1 8.0873 -2.7256 -3.5793 46 1 2.6794 1.3515 -3.8141 47 1 2.3869 -0.2420 -4.5524 48 1 2.6103 -1.3220 -2.3419 49 1 1.3461 -0.0693 -2.2954 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340316671.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:58 Heat of formation + Delta-G solvation = 102.328252 kcal Electronic energy + Delta-G solvation = -30882.641456 eV Core-core repulsion = 26847.836192 eV Total energy + Delta-G solvation = -4034.805264 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.08267 -40.53055 -38.39027 -37.32220 -37.04672 -34.29041 -33.94537 -33.89067 -32.78822 -32.08625 -30.29072 -28.77577 -27.77263 -26.74847 -25.44410 -24.83028 -23.78802 -22.62678 -22.16135 -20.85906 -20.74833 -19.46222 -19.06561 -18.61535 -17.62923 -17.45628 -16.99537 -16.40550 -16.14227 -16.11968 -15.99216 -15.89922 -15.74234 -15.56857 -15.35515 -14.95631 -14.59132 -14.49140 -14.16363 -13.85692 -13.70145 -13.46079 -13.29295 -13.02419 -12.64120 -12.57465 -12.56589 -12.42856 -12.29248 -12.22216 -12.18586 -11.89201 -11.68542 -11.45924 -11.39194 -11.16489 -11.11984 -10.64328 -10.59218 -10.36611 -10.02942 -9.84742 -9.38006 -8.61065 -6.46781 0.59138 0.90873 1.48483 1.55694 1.63919 1.72063 1.73234 1.79750 1.92300 2.56225 2.60785 2.97287 3.18030 3.36265 3.43967 3.55506 3.65976 3.75556 3.85260 3.95340 4.00360 4.06481 4.09905 4.17887 4.20641 4.26167 4.36464 4.43458 4.49833 4.52614 4.61190 4.64704 4.69349 4.78212 4.79371 4.83877 4.86627 4.95987 5.00766 5.10443 5.36838 5.42644 5.50718 5.54798 5.63697 5.81977 5.89743 5.93708 6.12488 6.16588 6.54005 6.69493 7.15260 7.50077 7.65093 8.76014 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.022971 B = 0.002470 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.647229 B =11333.145373 C =11744.340817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.217 4.217 3 C 0.164 3.836 4 N -0.551 5.551 5 C 0.072 3.928 6 C 0.070 3.930 7 N -0.447 5.447 8 C 0.341 3.659 9 N -0.347 5.347 10 N -0.320 5.320 11 C 0.204 3.796 12 C -0.042 4.042 13 C 0.227 3.773 14 H 0.019 0.981 15 O -0.592 6.592 16 C -0.651 4.651 17 H 0.062 0.938 18 C -0.017 4.017 19 N -0.922 5.922 20 Si 1.120 2.880 21 H -0.265 1.265 22 H -0.285 1.285 23 H -0.281 1.281 24 N -0.458 5.458 25 C 0.142 3.858 26 C -0.204 4.204 27 C -0.126 4.126 28 C 0.071 3.929 29 C 0.071 3.929 30 H 0.242 0.758 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.063 0.937 34 H 0.108 0.892 35 H 0.073 0.927 36 H 0.038 0.962 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.365 0.635 40 H 0.265 0.735 41 H 0.127 0.873 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.129 0.871 45 H 0.110 0.890 46 H 0.040 0.960 47 H 0.083 0.917 48 H 0.055 0.945 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.787 -9.867 16.739 26.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.217 4.217 3 C 0.039 3.961 4 N -0.277 5.277 5 C -0.056 4.056 6 C -0.057 4.057 7 N -0.173 5.173 8 C -0.016 4.016 9 N -0.191 5.191 10 N -0.160 5.160 11 C -0.064 4.064 12 C -0.082 4.082 13 C 0.169 3.831 14 H 0.037 0.963 15 O -0.398 6.398 16 C -0.688 4.688 17 H 0.080 0.920 18 C -0.219 4.219 19 N -0.558 5.558 20 Si 0.942 3.058 21 H -0.189 1.189 22 H -0.212 1.212 23 H -0.207 1.207 24 N -0.150 5.150 25 C 0.022 3.978 26 C -0.223 4.223 27 C -0.164 4.164 28 C -0.056 4.056 29 C -0.057 4.057 30 H 0.258 0.742 31 H 0.092 0.908 32 H 0.129 0.871 33 H 0.081 0.919 34 H 0.126 0.874 35 H 0.091 0.909 36 H 0.057 0.943 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.211 0.789 40 H 0.076 0.924 41 H 0.145 0.855 42 H 0.126 0.874 43 H 0.094 0.906 44 H 0.147 0.853 45 H 0.128 0.872 46 H 0.058 0.942 47 H 0.101 0.899 48 H 0.073 0.927 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.426 -8.808 16.524 24.908 hybrid contribution -1.157 -0.474 0.136 1.258 sum -17.583 -9.281 16.660 25.940 Atomic orbital electron populations 1.25684 0.96836 1.00037 0.98302 1.23216 0.95016 1.01426 1.02072 1.19129 0.84532 1.01235 0.91210 1.62240 1.04440 1.58468 1.02507 1.22136 0.87186 1.00959 0.95283 1.22211 0.97553 0.96499 0.89469 1.59046 1.06152 1.56317 0.95815 1.22470 0.99990 0.86761 0.92393 1.74438 1.21460 1.18183 1.04980 1.73942 1.14535 1.19102 1.08432 1.25143 1.00754 0.87188 0.93355 1.20781 0.95615 1.03006 0.88781 1.19318 0.88709 0.79682 0.95397 0.96321 1.86451 1.85584 1.20399 1.47345 1.22801 0.95128 1.46223 1.04696 0.91964 1.27291 0.96436 0.93740 1.04466 1.70729 1.40202 1.37360 1.07493 0.82908 0.74993 0.76200 0.71666 1.18889 1.21152 1.20684 1.46520 1.43053 1.12029 1.13375 1.21151 0.96802 0.76201 1.03680 1.22885 0.96752 1.02950 0.99737 1.24089 1.03310 0.95464 0.93528 1.22235 0.84093 1.00422 0.98860 1.22104 0.98809 0.96627 0.88134 0.74157 0.90750 0.87125 0.91912 0.87397 0.90866 0.94337 0.88707 0.88239 0.78889 0.92444 0.85468 0.87442 0.90628 0.85319 0.87166 0.94177 0.89904 0.92684 0.89064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.39 19.05 74.32 1.42 -0.97 16 2 C -0.22 -3.21 11.54 31.12 0.36 -2.85 16 3 C 0.16 2.04 5.78 84.50 0.49 2.53 16 4 N -0.55 -9.09 4.84 -906.81 -4.39 -13.48 16 5 C 0.07 1.12 5.58 86.31 0.48 1.60 16 6 C 0.07 1.68 5.55 86.31 0.48 2.16 16 7 N -0.45 -11.38 4.73 -705.54 -3.33 -14.72 16 8 C 0.34 11.59 6.46 260.11 1.68 13.27 16 9 N -0.35 -14.43 12.17 -58.00 -0.71 -15.13 16 10 N -0.32 -14.35 12.18 -49.54 -0.60 -14.95 16 11 C 0.20 8.22 7.09 137.63 0.98 9.19 16 12 C -0.04 -1.68 5.20 29.85 0.16 -1.52 16 13 C 0.23 11.29 2.42 29.85 0.07 11.36 16 14 H 0.02 1.04 7.18 -2.39 -0.02 1.02 16 15 O -0.59 -31.57 11.77 -148.98 -1.75 -33.33 16 16 C -0.65 -34.46 8.76 25.60 0.22 -34.23 16 17 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16 18 C -0.02 -0.97 5.40 84.65 0.46 -0.51 16 19 N -0.92 -56.53 13.53 21.45 0.29 -56.24 16 20 Si 1.12 48.48 29.90 68.60 2.05 50.53 16 21 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 22 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 23 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 24 N -0.46 -15.45 2.79 -518.91 -1.45 -16.90 16 25 C 0.14 3.66 6.50 85.63 0.56 4.21 16 26 C -0.20 -5.57 9.85 25.65 0.25 -5.32 16 27 C -0.13 -2.47 14.32 67.78 0.97 -1.50 16 28 C 0.07 1.62 5.50 86.31 0.47 2.09 16 29 C 0.07 1.21 5.18 86.31 0.45 1.65 16 30 H 0.24 1.37 7.80 -4.41 -0.03 1.33 16 31 H 0.07 0.70 8.08 -2.39 -0.02 0.69 16 32 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.11 1.30 8.14 -2.39 -0.02 1.29 16 35 H 0.07 1.90 8.13 -2.39 -0.02 1.88 16 36 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.09 3.72 8.14 -2.39 -0.02 3.70 16 38 H 0.10 3.50 7.17 -2.39 -0.02 3.48 16 39 H 0.36 17.75 9.04 -74.06 -0.67 17.08 16 40 H 0.27 16.99 6.47 -92.71 -0.60 16.39 16 41 H 0.13 2.46 7.79 -2.38 -0.02 2.44 16 42 H 0.11 2.62 7.10 -2.39 -0.02 2.60 16 43 H 0.08 2.75 7.24 -2.91 -0.02 2.73 16 44 H 0.13 1.77 7.84 -2.91 -0.02 1.75 16 45 H 0.11 2.01 8.06 -2.91 -0.02 1.98 16 46 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.08 1.81 8.13 -2.38 -0.02 1.79 16 48 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.09 1.51 6.51 -2.39 -0.02 1.49 16 Total: -1.00 -75.69 408.70 0.04 -75.65 By element: Atomic # 1 Polarization: 36.93 SS G_CDS: 0.45 Total: 37.38 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 9.49 Total: 1.18 kcal Atomic # 7 Polarization: -121.22 SS G_CDS: -10.20 Total: -131.42 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -1.75 Total: -33.33 kcal Atomic # 14 Polarization: 48.48 SS G_CDS: 2.05 Total: 50.53 kcal Total: -75.69 0.04 -75.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340316671.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.982 kcal (2) G-P(sol) polarization free energy of solvation -75.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds