Wall clock time and date at job start Wed Apr 1 2020 03:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50698 * 120.00154 * 2 1 4 4 C 1.50700 * 120.00096 * 180.02562 * 2 1 3 5 5 N 1.46502 * 109.47279 * 125.57884 * 4 2 1 6 6 C 1.36454 * 127.13606 * 281.94534 * 5 4 2 7 7 N 1.38580 * 126.46950 * 0.02786 * 6 5 4 8 8 C 1.47011 * 111.00508 * 68.95640 * 7 6 5 9 9 C 1.53099 * 109.25987 * 177.60639 * 8 7 6 10 10 O 1.43014 * 109.25820 * 56.84696 * 9 8 7 11 11 C 1.43020 * 113.73988 * 301.33160 * 10 9 8 12 12 H 1.09002 * 109.50507 * 298.69015 * 11 10 9 13 13 C 1.47197 * 109.50571 * 178.60547 * 11 10 9 14 14 N 6.23819 * 61.19781 * 197.54249 * 2 1 3 15 15 C 1.47015 * 111.00030 * 305.31327 * 7 6 5 16 16 N 1.31214 * 107.05433 * 179.87648 * 6 5 4 17 17 N 1.28532 * 109.85854 * 0.40560 * 16 6 5 18 18 C 1.30292 * 110.05321 * 359.74585 * 17 16 6 19 19 C 1.50704 * 126.34598 * 179.97438 * 18 17 16 20 20 C 1.52997 * 109.47349 * 129.00406 * 19 18 17 21 21 C 1.53010 * 109.46577 * 249.00082 * 19 18 17 22 22 C 1.50699 * 109.47136 * 8.99739 * 19 18 17 23 23 H 1.07998 * 120.00228 * 0.02562 * 22 19 18 24 24 C 1.37882 * 119.99674 * 180.02562 * 22 19 18 25 25 N 1.31509 * 120.00316 * 359.97438 * 24 22 19 26 26 Si 1.86803 * 119.99513 * 180.02562 * 24 22 19 27 27 H 1.48492 * 109.47546 * 89.99824 * 26 24 22 28 28 H 1.48499 * 109.46427 * 209.99722 * 26 24 22 29 29 H 1.48501 * 109.46945 * 329.99241 * 26 24 22 30 30 H 1.08002 * 120.00057 * 356.32539 * 1 2 3 31 31 H 1.08000 * 120.00196 * 176.04507 * 1 2 3 32 32 H 1.09002 * 109.47436 * 95.68866 * 3 2 1 33 33 H 1.09002 * 109.46941 * 215.68727 * 3 2 1 34 34 H 1.09001 * 109.47330 * 335.68856 * 3 2 1 35 35 H 1.09000 * 109.47411 * 245.58035 * 4 2 1 36 36 H 1.09005 * 109.47172 * 5.57535 * 4 2 1 37 37 H 1.09000 * 109.50516 * 297.54321 * 8 7 6 38 38 H 1.08999 * 109.50629 * 57.62651 * 8 7 6 39 39 H 1.08998 * 109.50524 * 176.78501 * 9 8 7 40 40 H 1.09006 * 109.50469 * 296.87039 * 9 8 7 41 41 H 1.08995 * 109.51207 * 302.34012 * 15 7 6 42 42 H 1.09000 * 109.50302 * 62.46445 * 15 7 6 43 43 H 1.08998 * 109.47338 * 64.34663 * 20 19 18 44 44 H 1.08998 * 109.47191 * 184.34343 * 20 19 18 45 45 H 1.08999 * 109.46977 * 304.34443 * 20 19 18 46 46 H 1.08999 * 109.47176 * 65.08931 * 21 19 18 47 47 H 1.08999 * 109.46546 * 185.08567 * 21 19 18 48 48 H 1.08996 * 109.46846 * 305.08720 * 21 19 18 49 49 H 0.96994 * 120.00122 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0006 5 7 3.0036 -1.3257 -1.1240 6 6 2.7143 -1.5641 -2.4360 7 7 1.4636 -1.8353 -2.9676 8 6 0.5962 -0.6499 -2.9054 9 6 -0.7511 -0.9754 -3.5554 10 8 -1.3310 -2.1057 -2.8985 11 6 -0.5131 -3.2782 -2.9405 12 1 -0.3560 -3.5755 -3.9773 13 6 -1.1805 -4.3694 -2.2120 14 7 -1.6956 -5.2122 -1.6477 15 6 0.8367 -2.9761 -2.2843 16 7 3.8435 -1.4849 -3.0996 17 7 4.8078 -1.2235 -2.2909 18 6 4.3539 -1.1161 -1.0743 19 6 5.1666 -0.8168 0.1590 20 6 4.5246 0.3423 0.9240 21 6 5.2101 -2.0568 1.0543 22 6 6.5687 -0.4381 -0.2430 23 1 6.8437 -0.4159 -1.2872 24 6 7.5004 -0.1199 0.7223 25 7 7.1654 -0.1464 1.9937 26 14 9.2382 0.3503 0.2238 27 1 9.3145 1.8191 0.0196 28 1 10.1857 -0.0504 1.2948 29 1 9.5960 -0.3444 -1.0390 30 1 -0.5400 0.9334 0.0599 31 1 -0.5400 -0.9331 -0.0645 32 1 2.3334 1.5688 1.0226 33 1 2.9680 1.2023 -0.5995 34 1 1.4341 2.0880 -0.4231 35 1 2.6131 -1.4078 0.9351 36 1 1.3593 -2.1311 -0.1008 37 1 0.4394 -0.3680 -1.8642 38 1 1.0686 0.1750 -3.4387 39 1 -1.4174 -0.1180 -3.4608 40 1 -0.6004 -1.2046 -4.6104 41 1 1.4841 -3.8492 -2.3647 42 1 0.6837 -2.7313 -1.2332 43 1 3.5400 0.0407 1.2814 44 1 5.1532 0.6095 1.7733 45 1 4.4231 1.2024 0.2622 46 1 5.7477 -2.8554 0.5431 47 1 5.7203 -1.8141 1.9864 48 1 4.1933 -2.3842 1.2711 49 1 7.8210 0.0771 2.6727 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342900966.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:18 Heat of formation + Delta-G solvation = 129.616171 kcal Electronic energy + Delta-G solvation = -32735.884710 eV Core-core repulsion = 28702.262739 eV Total energy + Delta-G solvation = -4033.621971 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.64076 -40.23113 -37.39679 -36.79078 -36.30321 -35.13733 -33.15434 -32.00156 -31.34201 -29.42385 -28.01449 -27.38480 -26.78505 -25.62475 -25.10197 -25.00938 -22.43420 -21.61483 -20.70717 -19.55937 -19.11077 -18.56095 -17.08016 -16.97272 -16.20723 -16.07805 -15.86412 -15.59685 -15.16477 -15.03496 -14.88922 -14.48836 -14.37092 -13.90598 -13.57610 -13.44058 -13.23401 -13.11621 -12.90427 -12.82895 -12.35798 -12.16886 -12.02359 -11.83963 -11.71452 -11.53766 -11.40917 -11.27095 -11.09041 -10.94311 -10.71998 -10.68296 -10.48790 -10.16526 -10.10108 -9.88511 -9.71105 -9.67912 -9.34901 -8.87085 -8.69138 -8.46254 -8.22172 -6.08647 -4.14552 1.76122 1.96753 2.16617 2.31081 2.79625 3.06570 3.30478 3.35867 3.37287 3.45582 3.58306 3.95085 4.18186 4.23979 4.40103 4.47549 4.55450 4.67322 4.85842 4.92053 5.00620 5.10227 5.11259 5.21013 5.32624 5.36055 5.41362 5.52720 5.55673 5.66612 5.73898 5.78507 6.00472 6.19789 6.29585 6.30696 6.34077 6.47745 6.48633 6.50360 6.56396 6.57001 6.65959 6.99194 7.04888 7.07691 7.27482 7.46383 7.69628 7.75179 8.02990 8.23763 8.92659 9.46677 9.56310 10.94793 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.017607 B = 0.003483 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.863476 B = 8037.051871 C = 8264.522118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.132 4.132 3 C -0.129 4.129 4 C 0.123 3.877 5 N -0.498 5.498 6 C 0.298 3.702 7 N -0.426 5.426 8 C -0.019 4.019 9 C 0.072 3.928 10 O -0.371 6.371 11 C 0.199 3.801 12 H 0.120 0.880 13 C 0.217 3.783 14 N -0.398 5.398 15 C 0.018 3.982 16 N -0.265 5.265 17 N -0.289 5.289 18 C 0.252 3.748 19 C 0.143 3.857 20 C -0.144 4.144 21 C -0.129 4.129 22 C -0.493 4.493 23 H 0.077 0.923 24 C 0.064 3.936 25 N -0.894 5.894 26 Si 0.899 3.101 27 H -0.281 1.281 28 H -0.288 1.288 29 H -0.271 1.271 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.058 0.942 35 H 0.122 0.878 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.072 0.928 41 H 0.105 0.895 42 H 0.064 0.936 43 H 0.019 0.981 44 H 0.098 0.902 45 H 0.037 0.963 46 H 0.036 0.964 47 H 0.096 0.904 48 H 0.004 0.996 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.039 0.402 -4.507 17.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.133 4.133 3 C -0.185 4.185 4 C 0.000 4.000 5 N -0.195 5.195 6 C -0.057 4.057 7 N -0.150 5.150 8 C -0.146 4.146 9 C -0.005 4.005 10 O -0.288 6.288 11 C 0.137 3.863 12 H 0.137 0.863 13 C -0.102 4.102 14 N -0.075 5.075 15 C -0.111 4.111 16 N -0.107 5.107 17 N -0.127 5.127 18 C -0.015 4.015 19 C 0.140 3.860 20 C -0.202 4.202 21 C -0.188 4.188 22 C -0.532 4.532 23 H 0.095 0.905 24 C -0.137 4.137 25 N -0.533 5.533 26 Si 0.727 3.273 27 H -0.207 1.207 28 H -0.214 1.214 29 H -0.196 1.196 30 H 0.127 0.873 31 H 0.119 0.881 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.140 0.860 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.115 0.885 39 H 0.130 0.870 40 H 0.090 0.910 41 H 0.123 0.877 42 H 0.082 0.918 43 H 0.038 0.962 44 H 0.116 0.884 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.115 0.885 48 H 0.023 0.977 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.863 -0.958 -5.133 17.653 hybrid contribution 0.247 0.748 1.308 1.527 sum -16.616 -0.209 -3.826 17.052 Atomic orbital electron populations 1.23728 0.94667 1.02728 1.00718 1.22001 0.95364 0.96184 0.99776 1.21307 1.00873 0.92871 1.03486 1.21371 0.91915 0.95780 0.90912 1.47338 1.09484 1.54651 1.08055 1.22546 0.93249 1.09171 0.80720 1.59022 0.98837 1.05568 1.51549 1.23706 0.93400 0.92728 1.04728 1.22800 0.93200 0.87958 0.96552 1.88031 1.43404 1.18947 1.78465 1.19061 0.86981 0.81669 0.98544 0.86266 1.28373 0.94069 0.94187 0.93603 1.81314 1.06853 1.10850 1.08524 1.23014 0.94848 0.95830 0.97450 1.74486 0.94248 1.16526 1.25395 1.74329 1.20717 1.19168 0.98459 1.26215 0.79366 0.96785 0.99088 1.16979 0.92473 0.93177 0.83379 1.22417 0.97700 0.97797 1.02325 1.21906 0.96978 0.96942 1.02926 1.21066 0.92558 1.45084 0.94448 0.90460 1.24858 0.98862 0.95141 0.94803 1.69769 1.34562 1.49457 0.99551 0.86454 0.83749 0.78726 0.78378 1.20742 1.21383 1.19566 0.87291 0.88119 0.90155 0.90043 0.92270 0.86045 0.89175 0.89607 0.88512 0.86971 0.91011 0.87704 0.91821 0.96243 0.88390 0.94428 0.94486 0.88530 0.97674 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 11.32 29.02 0.33 -1.32 16 2 C -0.13 -1.52 3.97 -101.07 -0.40 -1.93 16 3 C -0.13 -1.64 7.79 36.00 0.28 -1.36 16 4 C 0.12 1.64 4.94 -5.19 -0.03 1.62 16 5 N -0.50 -8.32 2.37 -115.36 -0.27 -8.59 16 6 C 0.30 4.99 6.68 -318.88 -2.13 2.86 16 7 N -0.43 -5.30 4.78 -174.21 -0.83 -6.13 16 8 C -0.02 -0.19 5.46 -3.71 -0.02 -0.21 16 9 C 0.07 0.51 7.01 37.21 0.26 0.77 16 10 O -0.37 -3.15 10.43 -35.23 -0.37 -3.51 16 11 C 0.20 1.65 3.26 -29.47 -0.10 1.55 16 12 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 13 C 0.22 2.19 15.04 -20.71 -0.31 1.88 16 14 N -0.40 -4.96 18.55 42.22 0.78 -4.17 16 15 C 0.02 0.18 4.61 -3.71 -0.02 0.17 16 16 N -0.27 -5.54 12.23 30.31 0.37 -5.17 16 17 N -0.29 -6.72 11.03 32.99 0.36 -6.36 16 18 C 0.25 5.30 5.85 -154.02 -0.90 4.40 16 19 C 0.14 3.18 0.47 -156.81 -0.07 3.11 16 20 C -0.14 -2.93 6.02 37.16 0.22 -2.71 16 21 C -0.13 -2.79 8.06 37.16 0.30 -2.49 16 22 C -0.49 -12.69 7.91 -34.44 -0.27 -12.97 16 23 H 0.08 2.13 6.97 -52.49 -0.37 1.76 16 24 C 0.06 1.63 5.14 -17.82 -0.09 1.54 16 25 N -0.89 -22.67 9.39 55.43 0.52 -22.15 16 26 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 29 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 30 H 0.11 0.85 8.01 -52.49 -0.42 0.42 16 31 H 0.10 0.86 7.84 -52.49 -0.41 0.45 16 32 H 0.08 1.02 7.02 -51.93 -0.36 0.66 16 33 H 0.08 1.31 4.91 -51.93 -0.26 1.05 16 34 H 0.06 0.63 7.99 -51.93 -0.42 0.22 16 35 H 0.12 1.75 4.29 -51.93 -0.22 1.53 16 36 H 0.09 1.03 4.58 -51.93 -0.24 0.79 16 37 H 0.09 0.86 2.36 -51.93 -0.12 0.74 16 38 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.06 0.66 4.61 -51.93 -0.24 0.42 16 43 H 0.02 0.33 3.65 -51.93 -0.19 0.14 16 44 H 0.10 2.24 5.97 -51.93 -0.31 1.93 16 45 H 0.04 0.76 5.99 -51.93 -0.31 0.45 16 46 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.10 2.26 6.22 -51.93 -0.32 1.93 16 48 H 0.00 0.08 6.25 -51.93 -0.32 -0.24 16 49 H 0.26 6.44 8.31 -40.82 -0.34 6.10 16 LS Contribution 366.97 15.07 5.53 5.53 Total: -1.00 -29.54 366.97 -8.06 -37.60 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.18 Total: 2.41 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -2.95 Total: -5.09 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: 0.93 Total: -52.57 kcal Atomic # 8 Polarization: -3.15 SS G_CDS: -0.37 Total: -3.51 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.54 -8.06 -37.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342900966.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.213 kcal (2) G-P(sol) polarization free energy of solvation -29.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds