Wall clock time and date at job start Wed Apr 1 2020 03:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50698 * 120.00154 * 2 1 4 4 C 1.50700 * 120.00096 * 180.02562 * 2 1 3 5 5 N 1.46502 * 109.47279 * 125.57884 * 4 2 1 6 6 C 1.36454 * 127.13606 * 281.94534 * 5 4 2 7 7 N 1.38580 * 126.46950 * 0.02786 * 6 5 4 8 8 C 1.47011 * 111.00508 * 68.95640 * 7 6 5 9 9 C 1.53099 * 109.25987 * 177.60639 * 8 7 6 10 10 O 1.43014 * 109.25820 * 56.84696 * 9 8 7 11 11 C 1.43020 * 113.73988 * 301.33160 * 10 9 8 12 12 H 1.09002 * 109.50507 * 298.69015 * 11 10 9 13 13 C 1.47197 * 109.50571 * 178.60547 * 11 10 9 14 14 N 6.23819 * 61.19781 * 197.54249 * 2 1 3 15 15 C 1.47015 * 111.00030 * 305.31327 * 7 6 5 16 16 N 1.31214 * 107.05433 * 179.87648 * 6 5 4 17 17 N 1.28532 * 109.85854 * 0.40560 * 16 6 5 18 18 C 1.30292 * 110.05321 * 359.74585 * 17 16 6 19 19 C 1.50704 * 126.34598 * 179.97438 * 18 17 16 20 20 C 1.52997 * 109.47349 * 129.00406 * 19 18 17 21 21 C 1.53010 * 109.46577 * 249.00082 * 19 18 17 22 22 C 1.50699 * 109.47136 * 8.99739 * 19 18 17 23 23 H 1.07998 * 120.00228 * 0.02562 * 22 19 18 24 24 C 1.37882 * 119.99674 * 180.02562 * 22 19 18 25 25 N 1.31509 * 120.00316 * 359.97438 * 24 22 19 26 26 Si 1.86803 * 119.99513 * 180.02562 * 24 22 19 27 27 H 1.48492 * 109.47546 * 89.99824 * 26 24 22 28 28 H 1.48499 * 109.46427 * 209.99722 * 26 24 22 29 29 H 1.48501 * 109.46945 * 329.99241 * 26 24 22 30 30 H 1.08002 * 120.00057 * 356.32539 * 1 2 3 31 31 H 1.08000 * 120.00196 * 176.04507 * 1 2 3 32 32 H 1.09002 * 109.47436 * 95.68866 * 3 2 1 33 33 H 1.09002 * 109.46941 * 215.68727 * 3 2 1 34 34 H 1.09001 * 109.47330 * 335.68856 * 3 2 1 35 35 H 1.09000 * 109.47411 * 245.58035 * 4 2 1 36 36 H 1.09005 * 109.47172 * 5.57535 * 4 2 1 37 37 H 1.09000 * 109.50516 * 297.54321 * 8 7 6 38 38 H 1.08999 * 109.50629 * 57.62651 * 8 7 6 39 39 H 1.08998 * 109.50524 * 176.78501 * 9 8 7 40 40 H 1.09006 * 109.50469 * 296.87039 * 9 8 7 41 41 H 1.08995 * 109.51207 * 302.34012 * 15 7 6 42 42 H 1.09000 * 109.50302 * 62.46445 * 15 7 6 43 43 H 1.08998 * 109.47338 * 64.34663 * 20 19 18 44 44 H 1.08998 * 109.47191 * 184.34343 * 20 19 18 45 45 H 1.08999 * 109.46977 * 304.34443 * 20 19 18 46 46 H 1.08999 * 109.47176 * 65.08931 * 21 19 18 47 47 H 1.08999 * 109.46546 * 185.08567 * 21 19 18 48 48 H 1.08996 * 109.46846 * 305.08720 * 21 19 18 49 49 H 0.96994 * 120.00122 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0006 5 7 3.0036 -1.3257 -1.1240 6 6 2.7143 -1.5641 -2.4360 7 7 1.4636 -1.8353 -2.9676 8 6 0.5962 -0.6499 -2.9054 9 6 -0.7511 -0.9754 -3.5554 10 8 -1.3310 -2.1057 -2.8985 11 6 -0.5131 -3.2782 -2.9405 12 1 -0.3560 -3.5755 -3.9773 13 6 -1.1805 -4.3694 -2.2120 14 7 -1.6956 -5.2122 -1.6477 15 6 0.8367 -2.9761 -2.2843 16 7 3.8435 -1.4849 -3.0996 17 7 4.8078 -1.2235 -2.2909 18 6 4.3539 -1.1161 -1.0743 19 6 5.1666 -0.8168 0.1590 20 6 4.5246 0.3423 0.9240 21 6 5.2101 -2.0568 1.0543 22 6 6.5687 -0.4381 -0.2430 23 1 6.8437 -0.4159 -1.2872 24 6 7.5004 -0.1199 0.7223 25 7 7.1654 -0.1464 1.9937 26 14 9.2382 0.3503 0.2238 27 1 9.3145 1.8191 0.0196 28 1 10.1857 -0.0504 1.2948 29 1 9.5960 -0.3444 -1.0390 30 1 -0.5400 0.9334 0.0599 31 1 -0.5400 -0.9331 -0.0645 32 1 2.3334 1.5688 1.0226 33 1 2.9680 1.2023 -0.5995 34 1 1.4341 2.0880 -0.4231 35 1 2.6131 -1.4078 0.9351 36 1 1.3593 -2.1311 -0.1008 37 1 0.4394 -0.3680 -1.8642 38 1 1.0686 0.1750 -3.4387 39 1 -1.4174 -0.1180 -3.4608 40 1 -0.6004 -1.2046 -4.6104 41 1 1.4841 -3.8492 -2.3647 42 1 0.6837 -2.7313 -1.2332 43 1 3.5400 0.0407 1.2814 44 1 5.1532 0.6095 1.7733 45 1 4.4231 1.2024 0.2622 46 1 5.7477 -2.8554 0.5431 47 1 5.7203 -1.8141 1.9864 48 1 4.1933 -2.3842 1.2711 49 1 7.8210 0.0771 2.6727 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342900966.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:17 Heat of formation + Delta-G solvation = 112.845776 kcal Electronic energy + Delta-G solvation = -32736.611929 eV Core-core repulsion = 28702.262739 eV Total energy + Delta-G solvation = -4034.349190 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.03740 -41.06568 -38.49503 -37.87873 -37.37228 -36.40384 -34.41950 -33.15049 -32.75415 -30.68497 -29.18089 -28.51171 -27.85620 -27.28988 -26.82461 -25.81363 -23.76763 -22.82853 -21.79484 -21.03779 -20.12756 -19.42906 -18.12760 -17.92363 -17.70152 -17.17952 -16.91158 -16.86341 -16.50997 -16.17222 -16.00622 -15.51731 -15.37971 -15.08163 -14.82462 -14.54940 -14.37090 -14.14637 -14.06422 -13.69703 -13.56829 -13.43647 -13.17000 -13.09171 -12.94438 -12.83775 -12.68379 -12.57337 -12.48177 -12.40406 -12.37022 -12.02528 -11.88726 -11.86623 -11.53028 -11.38448 -11.01028 -10.97423 -10.70191 -10.38925 -10.16604 -9.85012 -9.61628 -8.04011 -6.14518 0.80496 0.94446 1.21339 1.43311 1.43319 1.46386 1.56250 1.66500 2.02794 2.14993 2.48806 2.51397 3.22098 3.22496 3.31277 3.41573 3.58084 3.75124 3.79626 3.88831 4.00993 4.10277 4.24170 4.28555 4.30585 4.44468 4.52153 4.59623 4.66987 4.72609 4.76634 4.80564 4.86428 4.89355 4.93537 4.99139 5.01436 5.08757 5.10477 5.31007 5.46379 5.47832 5.50910 5.52907 5.67035 5.73857 5.83964 5.97716 6.08339 6.28025 6.30358 6.42469 6.89081 7.51479 8.02452 8.96655 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.017607 B = 0.003483 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.863476 B = 8037.051871 C = 8264.522118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.161 4.161 3 C -0.123 4.123 4 C 0.117 3.883 5 N -0.487 5.487 6 C 0.329 3.671 7 N -0.427 5.427 8 C -0.021 4.021 9 C 0.078 3.922 10 O -0.372 6.372 11 C 0.211 3.789 12 H 0.147 0.853 13 C 0.242 3.758 14 N -0.441 5.441 15 C 0.016 3.984 16 N -0.312 5.312 17 N -0.335 5.335 18 C 0.236 3.764 19 C 0.140 3.860 20 C -0.125 4.125 21 C -0.117 4.117 22 C -0.512 4.512 23 H 0.050 0.950 24 C 0.033 3.967 25 N -0.900 5.900 26 Si 0.943 3.057 27 H -0.278 1.278 28 H -0.280 1.280 29 H -0.282 1.282 30 H 0.132 0.868 31 H 0.115 0.885 32 H 0.073 0.927 33 H 0.042 0.958 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.142 0.858 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.067 0.933 43 H 0.049 0.951 44 H 0.072 0.928 45 H 0.030 0.970 46 H 0.016 0.984 47 H 0.078 0.922 48 H 0.034 0.966 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.666 0.727 -4.660 21.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.162 4.162 3 C -0.179 4.179 4 C -0.004 4.004 5 N -0.183 5.183 6 C -0.027 4.027 7 N -0.152 5.152 8 C -0.147 4.147 9 C 0.002 3.998 10 O -0.290 6.290 11 C 0.149 3.851 12 H 0.164 0.836 13 C -0.078 4.078 14 N -0.119 5.119 15 C -0.113 4.113 16 N -0.153 5.153 17 N -0.173 5.173 18 C -0.032 4.032 19 C 0.137 3.863 20 C -0.183 4.183 21 C -0.176 4.176 22 C -0.551 4.551 23 H 0.068 0.932 24 C -0.167 4.167 25 N -0.540 5.540 26 Si 0.770 3.230 27 H -0.204 1.204 28 H -0.206 1.206 29 H -0.208 1.208 30 H 0.150 0.850 31 H 0.133 0.867 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.126 0.874 36 H 0.132 0.868 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.160 0.840 40 H 0.103 0.897 41 H 0.119 0.881 42 H 0.084 0.916 43 H 0.068 0.932 44 H 0.091 0.909 45 H 0.049 0.951 46 H 0.035 0.965 47 H 0.097 0.903 48 H 0.053 0.947 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.510 -0.628 -5.269 21.185 hybrid contribution 1.216 0.653 1.293 1.892 sum -19.294 0.025 -3.976 19.699 Atomic orbital electron populations 1.23997 0.93452 1.04436 0.95815 1.21737 0.96036 0.94434 1.03983 1.21159 0.99825 0.94457 1.02502 1.21648 0.91611 0.98075 0.89079 1.47429 1.08401 1.53412 1.09067 1.22920 0.94040 1.05389 0.80373 1.59213 0.97644 1.07260 1.51080 1.23850 0.94269 0.91411 1.05174 1.22962 0.91680 0.88432 0.96741 1.88048 1.43187 1.19006 1.78754 1.19060 0.85311 0.81449 0.99244 0.83636 1.28552 0.92997 0.93671 0.92548 1.81352 1.08354 1.12267 1.09901 1.23070 0.95793 0.94757 0.97666 1.74347 0.95410 1.19377 1.26117 1.74195 1.22745 1.20593 0.99724 1.25725 0.81195 0.98257 0.98069 1.16860 0.91355 0.93814 0.84320 1.22189 0.98493 0.96862 1.00733 1.21729 0.98193 0.96144 1.01525 1.21172 0.94957 1.45749 0.93249 0.93194 1.25313 1.01044 0.95311 0.94987 1.69847 1.35029 1.49440 0.99651 0.85790 0.81206 0.78375 0.77642 1.20395 1.20553 1.20785 0.85011 0.86721 0.90806 0.93935 0.90192 0.87357 0.86800 0.89406 0.89494 0.84008 0.89673 0.88137 0.91556 0.93227 0.90928 0.95092 0.96505 0.90300 0.94737 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 11.32 67.79 0.77 -1.09 16 2 C -0.16 -3.25 3.97 -16.48 -0.07 -3.32 16 3 C -0.12 -2.94 7.79 71.24 0.56 -2.39 16 4 C 0.12 2.90 4.94 85.63 0.42 3.32 16 5 N -0.49 -16.09 2.37 -518.90 -1.23 -17.32 16 6 C 0.33 10.84 6.68 260.11 1.74 12.57 16 7 N -0.43 -9.63 4.78 -705.08 -3.37 -13.00 16 8 C -0.02 -0.35 5.46 86.32 0.47 0.13 16 9 C 0.08 0.73 7.01 72.02 0.50 1.24 16 10 O -0.37 -4.47 10.43 -148.98 -1.55 -6.02 16 11 C 0.21 2.66 3.26 28.82 0.09 2.75 16 12 H 0.15 1.20 8.14 -2.39 -0.02 1.18 16 13 C 0.24 4.13 15.04 89.42 1.35 5.47 16 14 N -0.44 -10.03 18.55 20.02 0.37 -9.66 16 15 C 0.02 0.28 4.61 86.31 0.40 0.68 16 16 N -0.31 -13.39 12.23 -58.01 -0.71 -14.10 16 17 N -0.33 -16.33 11.03 -49.54 -0.55 -16.87 16 18 C 0.24 10.27 5.85 137.64 0.81 11.07 16 19 C 0.14 6.43 0.47 -53.67 -0.03 6.41 16 20 C -0.12 -5.18 6.02 71.98 0.43 -4.75 16 21 C -0.12 -5.21 8.06 71.99 0.58 -4.63 16 22 C -0.51 -27.67 7.91 25.60 0.20 -27.46 16 23 H 0.05 2.92 6.97 -2.91 -0.02 2.90 16 24 C 0.03 1.73 5.14 84.66 0.43 2.16 16 25 N -0.90 -46.68 9.39 21.45 0.20 -46.48 16 26 Si 0.94 43.54 29.54 68.60 2.03 45.57 16 27 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 28 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 29 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 30 H 0.13 1.26 8.01 -2.91 -0.02 1.24 16 31 H 0.11 1.29 7.84 -2.91 -0.02 1.27 16 32 H 0.07 1.80 7.02 -2.39 -0.02 1.78 16 33 H 0.04 1.36 4.91 -2.39 -0.01 1.35 16 34 H 0.08 1.52 7.99 -2.39 -0.02 1.50 16 35 H 0.11 2.95 4.29 -2.39 -0.01 2.94 16 36 H 0.11 2.24 4.58 -2.38 -0.01 2.23 16 37 H 0.09 1.41 2.36 -2.39 -0.01 1.40 16 38 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 41 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.07 1.13 4.61 -2.39 -0.01 1.12 16 43 H 0.05 1.71 3.65 -2.39 -0.01 1.70 16 44 H 0.07 3.40 5.97 -2.39 -0.01 3.38 16 45 H 0.03 1.29 5.99 -2.39 -0.01 1.28 16 46 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.08 3.77 6.22 -2.39 -0.01 3.76 16 48 H 0.03 1.27 6.25 -2.39 -0.01 1.26 16 49 H 0.26 13.09 8.31 -92.71 -0.77 12.32 16 Total: -1.00 -68.95 366.97 4.87 -64.08 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 1.01 Total: 11.64 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: 8.66 Total: 2.16 kcal Atomic # 7 Polarization: -112.15 SS G_CDS: -5.28 Total: -117.43 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -1.55 Total: -6.02 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -68.95 4.87 -64.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342900966.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.927 kcal (2) G-P(sol) polarization free energy of solvation -68.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds