Wall clock time and date at job start Wed Apr 1 2020 03:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 119.99498 * 2 1 4 4 N 1.46502 * 109.47001 * 125.00140 * 3 2 1 5 5 C 1.36735 * 127.13739 * 271.28241 * 4 3 2 6 6 C 1.50701 * 126.34768 * 359.96504 * 5 4 3 7 7 H 1.09004 * 110.21500 * 344.58506 * 6 5 4 8 8 C 1.54477 * 110.24882 * 106.51778 * 6 5 4 9 9 C 1.54623 * 101.76695 * 144.41867 * 8 6 5 10 10 C 1.51281 * 104.19339 * 335.19888 * 9 8 6 11 11 O 1.21285 * 124.93987 * 196.27106 * 10 9 8 12 12 N 1.34564 * 110.14085 * 16.33011 * 10 9 8 13 13 N 1.30298 * 107.30500 * 180.22896 * 5 4 3 14 14 N 1.28520 * 110.05224 * 359.76951 * 13 5 4 15 15 C 1.31222 * 109.86536 * 0.02562 * 14 13 5 16 16 N 1.38575 * 126.47771 * 179.97438 * 15 14 13 17 17 C 1.46849 * 110.99966 * 36.07616 * 16 15 14 18 18 C 1.53041 * 109.52204 * 174.16460 * 17 16 15 19 19 C 1.53118 * 109.27854 * 59.18181 * 18 17 16 20 20 C 1.53116 * 109.15962 * 302.34634 * 19 18 17 21 21 H 1.09000 * 109.50498 * 297.67244 * 20 19 18 22 22 C 1.50703 * 109.50174 * 177.59565 * 20 19 18 23 23 H 1.07993 * 120.00304 * 239.99670 * 22 20 19 24 24 C 1.37885 * 119.99917 * 59.99856 * 22 20 19 25 25 N 1.31510 * 119.99730 * 180.02562 * 24 22 20 26 26 Si 1.86800 * 119.99873 * 359.72729 * 24 22 20 27 27 H 1.48500 * 109.46817 * 270.27293 * 26 24 22 28 28 H 1.48500 * 109.47328 * 30.27321 * 26 24 22 29 29 H 1.48502 * 109.47079 * 150.27342 * 26 24 22 30 30 C 1.46855 * 110.99882 * 271.87415 * 16 15 14 31 31 H 1.08001 * 120.00224 * 0.02562 * 1 2 3 32 32 H 1.07998 * 119.99347 * 179.97438 * 1 2 3 33 33 H 1.07995 * 120.00024 * 180.02562 * 2 1 3 34 34 H 1.08999 * 109.47538 * 4.99762 * 3 2 1 35 35 H 1.08998 * 109.47257 * 244.99734 * 3 2 1 36 36 H 1.09000 * 110.96486 * 262.53812 * 8 6 5 37 37 H 1.08996 * 110.97032 * 26.29543 * 8 6 5 38 38 H 1.08994 * 110.49213 * 93.87719 * 9 8 6 39 39 H 1.09005 * 110.48539 * 216.52703 * 9 8 6 40 40 H 0.97001 * 124.43118 * 180.35726 * 12 10 9 41 41 H 1.08994 * 109.45788 * 54.15126 * 17 16 15 42 42 H 1.08996 * 109.46313 * 294.17989 * 17 16 15 43 43 H 1.09004 * 109.50021 * 299.23866 * 18 17 16 44 44 H 1.08998 * 109.50145 * 179.12858 * 18 17 16 45 45 H 1.09000 * 109.52142 * 182.44265 * 19 18 17 46 46 H 1.08998 * 109.57505 * 62.28482 * 19 18 17 47 47 H 0.97004 * 119.99759 * 179.72770 * 25 24 22 48 48 H 1.08998 * 109.46651 * 65.81882 * 30 16 15 49 49 H 1.09001 * 109.45746 * 305.85473 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.7374 1.7712 2.4007 6 6 1.4309 2.3260 2.9071 7 1 0.7838 2.5891 2.0702 8 6 0.7309 1.2959 3.8209 9 6 0.0710 2.2102 4.8790 10 6 0.9172 3.4641 4.8653 11 8 0.9152 4.3130 5.7316 12 7 1.6718 3.5017 3.7518 13 7 3.8337 1.6262 3.0898 14 7 4.7566 1.1248 2.3492 15 6 4.2951 0.9217 1.1378 16 7 4.9979 0.3947 0.0660 17 6 5.9327 -0.6469 0.5107 18 6 6.5829 -1.3049 -0.7084 19 6 7.3247 -0.2407 -1.5218 20 6 6.3386 0.8567 -1.9313 21 1 5.5651 0.4309 -2.5704 22 6 7.0725 1.9379 -2.6820 23 1 7.0772 2.9497 -2.3043 24 6 7.7380 1.6354 -3.8511 25 7 8.3789 2.5789 -4.5059 26 14 7.7363 -0.1161 -4.5004 27 1 8.8942 -0.8545 -3.9353 28 1 6.4756 -0.7911 -4.1003 29 1 7.8380 -0.0949 -5.9818 30 6 5.6956 1.4521 -0.6768 31 1 -0.5400 0.9353 -0.0004 32 1 -0.5399 -0.9354 -0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 1.3585 2.1317 0.0895 35 1 2.6213 1.4027 -0.9313 36 1 -0.0212 0.7323 3.2688 37 1 1.4570 0.6266 4.2820 38 1 -0.9564 2.4402 4.5971 39 1 0.1018 1.7400 5.8620 40 1 2.2951 4.2128 3.5354 41 1 5.3916 -1.3994 1.0843 42 1 6.7045 -0.1990 1.1365 43 1 5.8127 -1.7650 -1.3276 44 1 7.2880 -2.0674 -0.3776 45 1 7.7530 -0.6972 -2.4142 46 1 8.1209 0.1924 -0.9163 47 1 8.8504 2.3653 -5.3263 48 1 6.4686 1.8901 -0.0455 49 1 4.9823 2.2240 -0.9657 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355825551.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:39 Heat of formation + Delta-G solvation = 79.253559 kcal Electronic energy + Delta-G solvation = -31157.708192 eV Core-core repulsion = 27121.902334 eV Total energy + Delta-G solvation = -4035.805858 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.11201 -40.46936 -38.69179 -36.89550 -36.37306 -34.13843 -32.99438 -32.24558 -31.68360 -30.53264 -30.20653 -27.38704 -26.91485 -25.14180 -24.32236 -23.13087 -21.81630 -21.35647 -20.94030 -20.69574 -20.14692 -19.04149 -17.90729 -17.36340 -17.12263 -16.49978 -16.26058 -16.09187 -15.48874 -15.16130 -14.62041 -14.55149 -14.30205 -14.05780 -13.91280 -13.84986 -13.60233 -13.31742 -13.09283 -13.05390 -12.71381 -12.51992 -12.43419 -12.30380 -11.90889 -11.60416 -11.50726 -11.32676 -11.19642 -10.76356 -10.63727 -10.31048 -10.24925 -10.18285 -10.16476 -9.96751 -9.93716 -9.62328 -9.40356 -9.13913 -9.08764 -8.63416 -8.32814 -6.17701 -4.18820 1.51247 1.61557 2.22551 2.40693 2.72837 3.10026 3.20100 3.30321 3.32823 3.70605 3.87799 3.98395 4.15063 4.30956 4.31410 4.38503 4.41108 4.58462 4.83968 4.91254 5.07296 5.13192 5.16515 5.23604 5.26738 5.35205 5.41599 5.44103 5.48738 5.60830 5.65838 5.80050 5.89915 5.94682 6.06721 6.10049 6.13844 6.19696 6.29492 6.36846 6.41002 6.47648 6.61383 6.66784 6.71085 6.95540 7.01912 7.38589 7.43142 7.65054 7.93508 8.38003 8.71156 8.84190 9.43304 10.95240 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.017236 B = 0.002807 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.157518 B = 9973.655996 C =10288.731385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.167 4.167 3 C 0.135 3.865 4 N -0.460 5.460 5 C 0.143 3.857 6 C 0.232 3.768 7 H 0.097 0.903 8 C -0.121 4.121 9 C -0.154 4.154 10 C 0.526 3.474 11 O -0.531 6.531 12 N -0.714 5.714 13 N -0.264 5.264 14 N -0.318 5.318 15 C 0.378 3.622 16 N -0.468 5.468 17 C 0.079 3.921 18 C -0.120 4.120 19 C -0.127 4.127 20 C 0.025 3.975 21 H 0.037 0.963 22 C -0.519 4.519 23 H 0.073 0.927 24 C 0.073 3.927 25 N -0.898 5.898 26 Si 0.888 3.112 27 H -0.278 1.278 28 H -0.263 1.263 29 H -0.298 1.298 30 C 0.085 3.915 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.119 0.881 34 H 0.095 0.905 35 H 0.116 0.884 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.415 0.585 41 H 0.068 0.932 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.051 0.949 46 H 0.062 0.938 47 H 0.265 0.735 48 H 0.046 0.954 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.548 -7.090 10.726 23.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.185 4.185 3 C 0.013 3.987 4 N -0.153 5.153 5 C -0.125 4.125 6 C 0.123 3.877 7 H 0.115 0.885 8 C -0.160 4.160 9 C -0.194 4.194 10 C 0.312 3.688 11 O -0.406 6.406 12 N -0.370 5.370 13 N -0.105 5.105 14 N -0.162 5.162 15 C 0.022 3.978 16 N -0.194 5.194 17 C -0.048 4.048 18 C -0.157 4.157 19 C -0.164 4.164 20 C 0.006 3.994 21 H 0.055 0.945 22 C -0.557 4.557 23 H 0.091 0.909 24 C -0.129 4.129 25 N -0.535 5.535 26 Si 0.718 3.282 27 H -0.205 1.205 28 H -0.188 1.188 29 H -0.225 1.225 30 C -0.040 4.040 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.137 0.863 34 H 0.113 0.887 35 H 0.134 0.866 36 H 0.115 0.885 37 H 0.111 0.889 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.255 0.745 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.069 0.931 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.064 0.936 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.878 -6.835 11.878 23.328 hybrid contribution 0.228 -0.410 -1.503 1.575 sum -18.650 -7.245 10.375 22.538 Atomic orbital electron populations 1.23933 0.95383 1.02515 0.98936 1.23097 0.96086 0.98265 1.01099 1.21037 0.91808 0.97002 0.88903 1.46242 1.10418 1.48288 1.10336 1.24501 0.99385 1.06431 0.82171 1.19646 0.88211 0.85973 0.93892 0.88509 1.22703 1.00295 0.96858 0.96112 1.22375 1.00351 0.94510 1.02182 1.20828 0.80047 0.87531 0.80392 1.90776 1.67608 1.43412 1.38853 1.46162 1.44630 1.23767 1.22445 1.73984 0.96627 1.14339 1.25562 1.74756 1.22216 1.18350 1.00897 1.22751 0.83565 0.98271 0.93204 1.58935 1.29533 1.13656 1.17291 1.21987 0.93587 0.92104 0.97138 1.21704 0.99404 0.98354 0.96287 1.22084 0.99366 0.96337 0.98621 1.19169 0.94239 0.94340 0.91700 0.94473 1.20894 1.32273 0.95527 1.07029 0.90867 1.24967 0.94595 0.97055 0.96263 1.69889 1.33458 1.32855 1.17320 0.86834 0.79100 0.85363 0.76894 1.20499 1.18841 1.22537 1.22293 0.95848 0.90582 0.95298 0.88163 0.87596 0.86261 0.88650 0.86578 0.88457 0.88902 0.87399 0.87460 0.74546 0.91379 0.92721 0.91654 0.91749 0.93098 0.91946 0.92496 0.93589 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 14.32 29.01 0.42 -0.49 16 2 C -0.17 -1.29 9.85 -36.03 -0.35 -1.64 16 3 C 0.13 1.21 6.41 -5.19 -0.03 1.18 16 4 N -0.46 -5.61 2.79 -115.36 -0.32 -5.93 16 5 C 0.14 1.71 6.87 -154.02 -1.06 0.65 16 6 C 0.23 1.84 3.90 -68.17 -0.27 1.58 16 7 H 0.10 0.52 7.05 -51.93 -0.37 0.16 16 8 C -0.12 -0.74 6.67 -25.10 -0.17 -0.90 16 9 C -0.15 -0.97 6.86 -26.75 -0.18 -1.15 16 10 C 0.53 5.57 8.43 -10.80 -0.09 5.48 16 11 O -0.53 -7.93 18.03 5.55 0.10 -7.83 16 12 N -0.71 -6.85 5.87 -53.85 -0.32 -7.17 16 13 N -0.26 -4.16 12.17 32.99 0.40 -3.76 16 14 N -0.32 -5.54 11.69 30.31 0.35 -5.19 16 15 C 0.38 5.92 6.71 -318.88 -2.14 3.78 16 16 N -0.47 -7.61 4.67 -174.55 -0.82 -8.42 16 17 C 0.08 1.23 5.09 -3.83 -0.02 1.21 16 18 C -0.12 -1.91 6.09 -26.65 -0.16 -2.07 16 19 C -0.13 -2.53 4.73 -26.61 -0.13 -2.65 16 20 C 0.02 0.54 1.85 -91.69 -0.17 0.37 16 21 H 0.04 0.82 7.22 -51.93 -0.37 0.45 16 22 C -0.52 -13.71 9.15 -34.44 -0.31 -14.03 16 23 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 24 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 25 N -0.90 -26.52 13.96 55.43 0.77 -25.75 16 26 Si 0.89 20.85 24.34 -169.99 -4.14 16.71 16 27 H -0.28 -6.39 6.89 56.52 0.39 -6.01 16 28 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 29 H -0.30 -7.09 7.11 56.52 0.40 -6.69 16 30 C 0.09 1.62 4.62 -3.83 -0.02 1.60 16 31 H 0.10 0.38 7.84 -52.49 -0.41 -0.03 16 32 H 0.11 0.48 8.06 -52.49 -0.42 0.06 16 33 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.10 0.59 6.83 -51.93 -0.35 0.23 16 35 H 0.12 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.73 7.90 -51.93 -0.41 0.32 16 38 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.42 4.16 8.96 -40.82 -0.37 3.79 16 41 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 42 H 0.05 0.91 8.06 -51.93 -0.42 0.50 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.05 1.08 3.32 -51.93 -0.17 0.91 16 46 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 47 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 48 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 49 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 LS Contribution 391.99 15.07 5.91 5.91 Total: -1.00 -33.88 391.99 -10.38 -44.27 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.54 Total: 2.33 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -4.79 Total: -5.17 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 0.08 Total: -56.22 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.10 Total: -7.83 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.14 Total: 16.71 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.88 -10.38 -44.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355825551.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.520 kcal (2) G-P(sol) polarization free energy of solvation -33.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds