Wall clock time and date at job start Wed Apr 1 2020 03:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 119.99498 * 2 1 4 4 N 1.46502 * 109.47001 * 125.00140 * 3 2 1 5 5 C 1.36735 * 127.13739 * 271.28241 * 4 3 2 6 6 C 1.50701 * 126.34768 * 359.96504 * 5 4 3 7 7 H 1.09004 * 110.21500 * 344.58506 * 6 5 4 8 8 C 1.54477 * 110.24882 * 106.51778 * 6 5 4 9 9 C 1.54623 * 101.76695 * 144.41867 * 8 6 5 10 10 C 1.51281 * 104.19339 * 335.19888 * 9 8 6 11 11 O 1.21285 * 124.93987 * 196.27106 * 10 9 8 12 12 N 1.34564 * 110.14085 * 16.33011 * 10 9 8 13 13 N 1.30298 * 107.30500 * 180.22896 * 5 4 3 14 14 N 1.28520 * 110.05224 * 359.76951 * 13 5 4 15 15 C 1.31222 * 109.86536 * 0.02562 * 14 13 5 16 16 N 1.38575 * 126.47771 * 179.97438 * 15 14 13 17 17 C 1.46849 * 110.99966 * 36.07616 * 16 15 14 18 18 C 1.53041 * 109.52204 * 174.16460 * 17 16 15 19 19 C 1.53118 * 109.27854 * 59.18181 * 18 17 16 20 20 C 1.53116 * 109.15962 * 302.34634 * 19 18 17 21 21 H 1.09000 * 109.50498 * 297.67244 * 20 19 18 22 22 C 1.50703 * 109.50174 * 177.59565 * 20 19 18 23 23 H 1.07993 * 120.00304 * 239.99670 * 22 20 19 24 24 C 1.37885 * 119.99917 * 59.99856 * 22 20 19 25 25 N 1.31510 * 119.99730 * 180.02562 * 24 22 20 26 26 Si 1.86800 * 119.99873 * 359.72729 * 24 22 20 27 27 H 1.48500 * 109.46817 * 270.27293 * 26 24 22 28 28 H 1.48500 * 109.47328 * 30.27321 * 26 24 22 29 29 H 1.48502 * 109.47079 * 150.27342 * 26 24 22 30 30 C 1.46855 * 110.99882 * 271.87415 * 16 15 14 31 31 H 1.08001 * 120.00224 * 0.02562 * 1 2 3 32 32 H 1.07998 * 119.99347 * 179.97438 * 1 2 3 33 33 H 1.07995 * 120.00024 * 180.02562 * 2 1 3 34 34 H 1.08999 * 109.47538 * 4.99762 * 3 2 1 35 35 H 1.08998 * 109.47257 * 244.99734 * 3 2 1 36 36 H 1.09000 * 110.96486 * 262.53812 * 8 6 5 37 37 H 1.08996 * 110.97032 * 26.29543 * 8 6 5 38 38 H 1.08994 * 110.49213 * 93.87719 * 9 8 6 39 39 H 1.09005 * 110.48539 * 216.52703 * 9 8 6 40 40 H 0.97001 * 124.43118 * 180.35726 * 12 10 9 41 41 H 1.08994 * 109.45788 * 54.15126 * 17 16 15 42 42 H 1.08996 * 109.46313 * 294.17989 * 17 16 15 43 43 H 1.09004 * 109.50021 * 299.23866 * 18 17 16 44 44 H 1.08998 * 109.50145 * 179.12858 * 18 17 16 45 45 H 1.09000 * 109.52142 * 182.44265 * 19 18 17 46 46 H 1.08998 * 109.57505 * 62.28482 * 19 18 17 47 47 H 0.97004 * 119.99759 * 179.72770 * 25 24 22 48 48 H 1.08998 * 109.46651 * 65.81882 * 30 16 15 49 49 H 1.09001 * 109.45746 * 305.85473 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.7374 1.7712 2.4007 6 6 1.4309 2.3260 2.9071 7 1 0.7838 2.5891 2.0702 8 6 0.7309 1.2959 3.8209 9 6 0.0710 2.2102 4.8790 10 6 0.9172 3.4641 4.8653 11 8 0.9152 4.3130 5.7316 12 7 1.6718 3.5017 3.7518 13 7 3.8337 1.6262 3.0898 14 7 4.7566 1.1248 2.3492 15 6 4.2951 0.9217 1.1378 16 7 4.9979 0.3947 0.0660 17 6 5.9327 -0.6469 0.5107 18 6 6.5829 -1.3049 -0.7084 19 6 7.3247 -0.2407 -1.5218 20 6 6.3386 0.8567 -1.9313 21 1 5.5651 0.4309 -2.5704 22 6 7.0725 1.9379 -2.6820 23 1 7.0772 2.9497 -2.3043 24 6 7.7380 1.6354 -3.8511 25 7 8.3789 2.5789 -4.5059 26 14 7.7363 -0.1161 -4.5004 27 1 8.8942 -0.8545 -3.9353 28 1 6.4756 -0.7911 -4.1003 29 1 7.8380 -0.0949 -5.9818 30 6 5.6956 1.4521 -0.6768 31 1 -0.5400 0.9353 -0.0004 32 1 -0.5399 -0.9354 -0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 1.3585 2.1317 0.0895 35 1 2.6213 1.4027 -0.9313 36 1 -0.0212 0.7323 3.2688 37 1 1.4570 0.6266 4.2820 38 1 -0.9564 2.4402 4.5971 39 1 0.1018 1.7400 5.8620 40 1 2.2951 4.2128 3.5354 41 1 5.3916 -1.3994 1.0843 42 1 6.7045 -0.1990 1.1365 43 1 5.8127 -1.7650 -1.3276 44 1 7.2880 -2.0674 -0.3776 45 1 7.7530 -0.6972 -2.4142 46 1 8.1209 0.1924 -0.9163 47 1 8.8504 2.3653 -5.3263 48 1 6.4686 1.8901 -0.0455 49 1 4.9823 2.2240 -0.9657 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355825551.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:38 Heat of formation + Delta-G solvation = 56.146275 kcal Electronic energy + Delta-G solvation = -31158.710199 eV Core-core repulsion = 27121.902334 eV Total energy + Delta-G solvation = -4036.807865 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.18175 -41.24041 -40.10816 -37.76547 -37.15156 -35.77809 -34.07468 -33.66374 -32.28271 -32.17757 -31.24731 -28.33166 -27.64576 -26.98081 -25.71174 -23.90465 -23.18478 -22.42129 -21.87519 -21.51845 -20.80375 -20.52799 -19.14590 -18.57536 -18.13153 -17.75640 -17.30367 -17.08662 -16.49970 -16.25178 -15.96757 -15.73224 -15.45459 -15.21022 -14.90643 -14.79895 -14.69757 -14.55100 -14.22256 -14.16801 -13.87861 -13.61854 -13.33858 -13.02448 -12.94652 -12.86977 -12.64736 -12.48338 -12.43362 -12.05565 -12.01258 -11.85345 -11.77308 -11.52044 -11.16845 -11.10673 -11.04133 -10.96853 -10.66989 -10.55887 -10.44321 -10.25096 -9.62121 -8.31431 -6.37212 0.53753 0.86914 1.33381 1.38157 1.48139 1.49464 1.59714 1.63718 2.32710 2.34411 2.64586 2.99950 3.04376 3.36168 3.58109 3.63187 3.75448 3.80643 3.87498 3.97210 4.04131 4.07783 4.12703 4.28337 4.32762 4.35284 4.49334 4.54942 4.61508 4.66636 4.72836 4.81930 4.84844 4.86313 4.92880 4.99683 5.06719 5.08386 5.11753 5.13846 5.30977 5.43144 5.55442 5.62631 5.67014 5.68825 5.76520 5.79204 5.92989 6.19370 6.26216 6.69169 7.13187 7.28706 7.60217 8.85383 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.017236 B = 0.002807 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.157518 B = 9973.655996 C =10288.731385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.195 4.195 3 C 0.129 3.871 4 N -0.451 5.451 5 C 0.169 3.831 6 C 0.228 3.772 7 H 0.138 0.862 8 C -0.111 4.111 9 C -0.141 4.141 10 C 0.516 3.484 11 O -0.585 6.585 12 N -0.717 5.717 13 N -0.308 5.308 14 N -0.351 5.351 15 C 0.358 3.642 16 N -0.456 5.456 17 C 0.080 3.920 18 C -0.109 4.109 19 C -0.127 4.127 20 C 0.029 3.971 21 H 0.042 0.958 22 C -0.523 4.523 23 H 0.028 0.972 24 C 0.015 3.985 25 N -0.950 5.950 26 Si 0.952 3.048 27 H -0.268 1.268 28 H -0.236 1.236 29 H -0.301 1.301 30 C 0.102 3.898 31 H 0.126 0.874 32 H 0.118 0.882 33 H 0.099 0.901 34 H 0.131 0.869 35 H 0.096 0.904 36 H 0.138 0.862 37 H 0.073 0.927 38 H 0.142 0.858 39 H 0.113 0.887 40 H 0.408 0.592 41 H 0.088 0.912 42 H 0.038 0.962 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.044 0.956 46 H 0.047 0.953 47 H 0.266 0.734 48 H 0.018 0.982 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.521 -10.003 10.749 27.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.214 4.214 3 C 0.009 3.991 4 N -0.143 5.143 5 C -0.100 4.100 6 C 0.120 3.880 7 H 0.156 0.844 8 C -0.150 4.150 9 C -0.180 4.180 10 C 0.304 3.696 11 O -0.465 6.465 12 N -0.371 5.371 13 N -0.148 5.148 14 N -0.196 5.196 15 C 0.000 4.000 16 N -0.181 5.181 17 C -0.047 4.047 18 C -0.146 4.146 19 C -0.165 4.165 20 C 0.010 3.990 21 H 0.060 0.940 22 C -0.561 4.561 23 H 0.047 0.953 24 C -0.183 4.183 25 N -0.590 5.590 26 Si 0.778 3.222 27 H -0.194 1.194 28 H -0.159 1.159 29 H -0.229 1.229 30 C -0.025 4.025 31 H 0.144 0.856 32 H 0.136 0.864 33 H 0.117 0.883 34 H 0.148 0.852 35 H 0.115 0.885 36 H 0.156 0.844 37 H 0.092 0.908 38 H 0.160 0.840 39 H 0.131 0.869 40 H 0.246 0.754 41 H 0.106 0.894 42 H 0.056 0.944 43 H 0.096 0.904 44 H 0.111 0.889 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.075 0.925 48 H 0.037 0.963 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.883 -9.785 11.902 27.587 hybrid contribution 1.376 0.643 -1.454 2.103 sum -21.507 -9.142 10.447 25.598 Atomic orbital electron populations 1.24221 0.94267 1.04308 0.94494 1.22834 0.96844 0.96594 1.05123 1.21346 0.91584 0.99369 0.86846 1.46458 1.09675 1.46917 1.11226 1.25268 0.99678 1.03554 0.81551 1.20201 0.86578 0.85863 0.95348 0.84426 1.22761 1.00441 0.96068 0.95707 1.22421 1.01046 0.91785 1.02786 1.21654 0.80173 0.88242 0.79501 1.90745 1.69446 1.45677 1.40605 1.46335 1.44121 1.23962 1.22654 1.73910 0.97882 1.16403 1.26607 1.74636 1.23775 1.19228 1.01936 1.22646 0.84910 0.99809 0.92631 1.58874 1.29006 1.12547 1.17691 1.22013 0.93369 0.92197 0.97084 1.21650 0.99827 0.97449 0.95706 1.21991 0.98865 0.96828 0.98818 1.19034 0.94277 0.93498 0.92197 0.94036 1.21197 1.32338 0.95134 1.07446 0.95333 1.25866 0.94158 1.01670 0.96558 1.70051 1.35228 1.35543 1.18179 0.85800 0.80627 0.80008 0.75770 1.19367 1.15930 1.22934 1.21894 0.95123 0.91193 0.94307 0.85607 0.86400 0.88256 0.85151 0.88542 0.84411 0.90848 0.83991 0.86877 0.75360 0.89360 0.94361 0.90367 0.88912 0.93750 0.93379 0.92471 0.96331 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 14.32 67.78 0.97 0.25 16 2 C -0.19 -2.34 9.85 25.64 0.25 -2.09 16 3 C 0.13 1.97 6.41 85.63 0.55 2.52 16 4 N -0.45 -10.32 2.79 -518.90 -1.45 -11.77 16 5 C 0.17 3.76 6.87 137.64 0.95 4.71 16 6 C 0.23 2.87 3.90 44.70 0.17 3.04 16 7 H 0.14 0.70 7.05 -2.39 -0.02 0.68 16 8 C -0.11 -0.88 6.67 31.65 0.21 -0.67 16 9 C -0.14 -1.25 6.86 30.59 0.21 -1.04 16 10 C 0.52 10.22 8.43 87.87 0.74 10.97 16 11 O -0.58 -17.58 18.03 -3.04 -0.05 -17.64 16 12 N -0.72 -12.72 5.87 -442.78 -2.60 -15.31 16 13 N -0.31 -9.72 12.17 -49.54 -0.60 -10.32 16 14 N -0.35 -12.49 11.69 -58.00 -0.68 -13.17 16 15 C 0.36 11.15 6.71 260.11 1.75 12.89 16 16 N -0.46 -14.71 4.67 -706.15 -3.30 -18.01 16 17 C 0.08 2.43 5.09 86.33 0.44 2.87 16 18 C -0.11 -3.21 6.09 30.65 0.19 -3.02 16 19 C -0.13 -4.99 4.73 30.67 0.15 -4.85 16 20 C 0.03 1.27 1.85 -11.49 -0.02 1.25 16 21 H 0.04 1.79 7.22 -2.39 -0.02 1.77 16 22 C -0.52 -28.85 9.15 25.60 0.23 -28.61 16 23 H 0.03 1.77 7.99 -2.91 -0.02 1.75 16 24 C 0.01 0.83 5.45 84.66 0.46 1.30 16 25 N -0.95 -58.45 13.96 21.45 0.30 -58.15 16 26 Si 0.95 42.87 24.34 68.60 1.67 44.54 16 27 H -0.27 -11.55 6.89 99.48 0.69 -10.86 16 28 H -0.24 -9.51 6.54 99.48 0.65 -8.86 16 29 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 30 C 0.10 3.99 4.62 86.32 0.40 4.38 16 31 H 0.13 0.07 7.84 -2.91 -0.02 0.05 16 32 H 0.12 0.42 8.06 -2.91 -0.02 0.40 16 33 H 0.10 1.61 8.06 -2.91 -0.02 1.58 16 34 H 0.13 1.01 6.83 -2.39 -0.02 0.99 16 35 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.14 0.06 8.14 -2.39 -0.02 0.04 16 37 H 0.07 0.94 7.90 -2.39 -0.02 0.92 16 38 H 0.14 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.41 8.10 8.96 -92.71 -0.83 7.27 16 41 H 0.09 2.36 8.10 -2.39 -0.02 2.34 16 42 H 0.04 1.29 8.06 -2.39 -0.02 1.27 16 43 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 44 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.04 1.80 3.32 -2.39 -0.01 1.79 16 46 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 48 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.06 2.44 8.10 -2.39 -0.02 2.42 16 Total: -1.00 -81.47 391.99 0.99 -80.48 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.06 Total: 15.45 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 7.64 Total: 3.90 kcal Atomic # 7 Polarization: -118.41 SS G_CDS: -8.33 Total: -126.74 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.05 Total: -17.64 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.67 Total: 44.54 kcal Total: -81.47 0.99 -80.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355825551.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.630 kcal (2) G-P(sol) polarization free energy of solvation -81.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds