Wall clock time and date at job start Wed Apr 1 2020 03:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50693 * 119.99988 * 2 1 4 4 C 1.50697 * 119.99898 * 180.02562 * 2 1 3 5 5 N 1.46503 * 109.47339 * 94.99928 * 4 2 1 6 6 C 1.36729 * 127.14080 * 95.30092 * 5 4 2 7 7 C 1.50698 * 126.34503 * 359.71750 * 6 5 4 8 8 H 1.08999 * 115.55113 * 25.66875 * 7 6 5 9 9 C 1.53003 * 117.49935 * 171.37872 * 7 6 5 10 10 C 1.53002 * 117.49976 * 240.00313 * 7 6 5 11 11 H 1.08993 * 117.50069 * 359.97438 * 10 7 6 12 12 C 1.47203 * 117.50053 * 144.99990 * 10 7 6 13 13 N 5.53670 * 152.18563 * 344.94860 * 2 1 3 14 14 N 1.30289 * 107.31055 * 179.97438 * 6 5 4 15 15 N 1.28530 * 110.05490 * 359.97438 * 14 6 5 16 16 C 1.31221 * 109.85489 * 0.02562 * 15 14 6 17 17 N 1.38583 * 126.47190 * 179.97438 * 16 15 14 18 18 C 1.46901 * 111.00326 * 106.15482 * 17 16 15 19 19 C 1.50695 * 109.47094 * 300.23319 * 18 17 16 20 20 H 1.08000 * 120.00252 * 5.01586 * 19 18 17 21 21 C 1.37876 * 120.00007 * 185.01705 * 19 18 17 22 22 N 1.31520 * 120.00159 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00278 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46918 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47415 * 119.99676 * 23 21 19 26 26 H 1.48500 * 109.46985 * 239.99951 * 23 21 19 27 27 C 1.46904 * 111.00045 * 342.20039 * 17 16 15 28 28 C 1.52996 * 109.47400 * 195.88898 * 27 17 16 29 29 O 1.42901 * 109.46928 * 64.20829 * 28 27 17 30 30 C 1.42908 * 113.99980 * 180.02562 * 29 28 27 31 31 H 1.08000 * 120.00225 * 359.97438 * 1 2 3 32 32 H 1.08004 * 120.00222 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47552 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47448 * 300.00751 * 3 2 1 35 35 H 1.09007 * 109.47188 * 60.00150 * 3 2 1 36 36 H 1.09003 * 109.47232 * 335.00197 * 4 2 1 37 37 H 1.09001 * 109.47311 * 214.99972 * 4 2 1 38 38 H 1.09005 * 117.49914 * 214.97938 * 9 7 6 39 39 H 1.08990 * 117.49826 * 0.02562 * 9 7 6 40 40 H 1.09000 * 109.46809 * 60.23254 * 18 17 16 41 41 H 1.09000 * 109.46996 * 180.23028 * 18 17 16 42 42 H 0.96994 * 120.00147 * 180.02562 * 22 21 19 43 43 H 1.09000 * 109.46793 * 315.89452 * 27 17 16 44 44 H 1.08998 * 109.47052 * 75.88788 * 27 17 16 45 45 H 1.08993 * 109.47400 * 184.20629 * 28 27 17 46 46 H 1.09000 * 109.46951 * 304.21233 * 28 27 17 47 47 H 1.09000 * 109.46817 * 180.02562 * 30 29 28 48 48 H 1.09004 * 109.46645 * 300.00049 * 30 29 28 49 49 H 1.08996 * 109.46775 * 59.99440 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4119 -1.6673 -1.3767 6 6 3.5895 -1.4145 -2.0239 7 6 4.7862 -0.6978 -1.4535 8 1 4.8857 -0.7387 -0.3689 9 6 6.0725 -0.7007 -2.2820 10 6 5.2457 0.5806 -2.1573 11 1 4.6827 0.9031 -3.0332 12 6 5.7883 1.6612 -1.3179 13 7 6.2070 2.4948 -0.6709 14 7 3.4833 -1.9032 -3.2270 15 7 2.3277 -2.4440 -3.3827 16 6 1.6288 -2.3277 -2.2782 17 7 0.3390 -2.7884 -2.0671 18 6 0.3391 -3.9781 -1.2054 19 6 1.1468 -5.0705 -1.8575 20 1 1.6799 -4.8732 -2.7758 21 6 1.2051 -6.3220 -1.2818 22 7 0.5563 -6.5622 -0.1632 23 14 2.2068 -7.6760 -2.0897 24 1 2.8368 -7.1535 -3.3288 25 1 3.2631 -8.1365 -1.1530 26 1 1.3162 -8.8147 -2.4299 27 6 -0.3375 -3.0620 -3.3421 28 6 -1.8443 -3.1804 -3.1049 29 8 -2.3549 -1.9258 -2.6494 30 6 -3.7613 -1.9281 -2.3960 31 1 -0.5400 0.9353 0.0004 32 1 -0.5401 -0.9353 0.0004 33 1 3.1351 1.1060 -0.0005 34 1 1.8001 1.8767 -0.8899 35 1 1.8002 1.8766 0.8900 36 1 1.4385 -2.0857 0.4334 37 1 2.9742 -1.1991 0.5889 38 1 7.0186 -0.7437 -1.7424 39 1 6.0530 -1.2206 -3.2398 40 1 0.7794 -3.7275 -0.2403 41 1 -0.6851 -4.3211 -1.0594 42 1 0.5976 -7.4425 0.2419 43 1 -0.1423 -2.2470 -4.0392 44 1 0.0389 -3.9956 -3.7601 45 1 -2.3382 -3.4570 -4.0363 46 1 -2.0346 -3.9451 -2.3517 47 1 -4.0705 -0.9402 -2.0546 48 1 -4.2952 -2.1790 -3.3126 49 1 -3.9909 -2.6667 -1.6281 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356578944.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:15 Heat of formation + Delta-G solvation = 121.720086 kcal Electronic energy + Delta-G solvation = -31598.616244 eV Core-core repulsion = 27564.651872 eV Total energy + Delta-G solvation = -4033.964371 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.41156 -38.46590 -37.86788 -36.62460 -36.31108 -35.70356 -33.00512 -32.67004 -29.96188 -28.78650 -27.47628 -26.89252 -26.37431 -25.72448 -24.75128 -23.77516 -22.95123 -21.78729 -20.30888 -19.50066 -18.55013 -18.08772 -17.02363 -16.40483 -16.14273 -15.92693 -15.69573 -15.35197 -14.96273 -14.55441 -14.44262 -14.37281 -14.17314 -13.96584 -13.70611 -13.34748 -13.20177 -13.12664 -12.90685 -12.46357 -12.21602 -12.09032 -11.88968 -11.78039 -11.69212 -11.43455 -11.29895 -11.15642 -11.02914 -10.99537 -10.95094 -10.74103 -10.62899 -10.45202 -10.24295 -10.02354 -9.67968 -9.46600 -9.24317 -9.05050 -8.72589 -8.59479 -7.43362 -6.21179 -4.29114 1.99705 2.14004 2.50476 2.59099 3.01232 3.20517 3.29757 3.37777 3.43260 3.63641 3.88765 4.20414 4.32177 4.45961 4.48049 4.56233 4.64769 4.81030 4.83603 4.91954 5.12679 5.25360 5.43713 5.45687 5.53123 5.54942 5.59487 5.67073 5.69547 5.72223 5.75250 5.83802 5.86353 5.90506 5.93821 5.94572 6.09313 6.12806 6.37179 6.57161 6.64514 6.70916 6.89998 6.94385 7.20021 7.21415 7.35257 7.44971 7.64490 7.75276 7.96643 8.11774 8.81589 9.38766 9.41517 10.84933 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.008693 B = 0.004501 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3220.160635 B = 6219.941346 C = 8128.267068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.167 4.167 3 C -0.110 4.110 4 C 0.151 3.849 5 N -0.462 5.462 6 C 0.170 3.830 7 C -0.034 4.034 8 H 0.126 0.874 9 C -0.116 4.116 10 C -0.066 4.066 11 H 0.152 0.848 12 C 0.240 3.760 13 N -0.433 5.433 14 N -0.276 5.276 15 N -0.333 5.333 16 C 0.424 3.576 17 N -0.456 5.456 18 C 0.190 3.810 19 C -0.555 4.555 20 H 0.072 0.928 21 C 0.071 3.929 22 N -0.890 5.890 23 Si 0.890 3.110 24 H -0.269 1.269 25 H -0.284 1.284 26 H -0.282 1.282 27 C 0.081 3.919 28 C 0.067 3.933 29 O -0.378 6.378 30 C 0.032 3.968 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.130 0.870 40 H 0.029 0.971 41 H 0.052 0.948 42 H 0.263 0.737 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.049 0.951 46 H 0.060 0.940 47 H 0.077 0.923 48 H 0.033 0.967 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.082 11.418 -0.612 11.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.168 4.168 3 C -0.167 4.167 4 C 0.028 3.972 5 N -0.156 5.156 6 C -0.096 4.096 7 C -0.057 4.057 8 H 0.144 0.856 9 C -0.155 4.155 10 C -0.088 4.088 11 H 0.170 0.830 12 C -0.077 4.077 13 N -0.109 5.109 14 N -0.117 5.117 15 N -0.178 5.178 16 C 0.068 3.932 17 N -0.180 5.180 18 C 0.066 3.934 19 C -0.594 4.594 20 H 0.090 0.910 21 C -0.133 4.133 22 N -0.528 5.528 23 Si 0.717 3.283 24 H -0.193 1.193 25 H -0.210 1.210 26 H -0.208 1.208 27 C -0.047 4.047 28 C -0.010 4.010 29 O -0.297 6.297 30 C -0.065 4.065 31 H 0.114 0.886 32 H 0.131 0.869 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.124 0.876 37 H 0.107 0.893 38 H 0.129 0.871 39 H 0.148 0.852 40 H 0.047 0.953 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.067 0.933 46 H 0.078 0.922 47 H 0.096 0.904 48 H 0.051 0.949 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.679 12.675 -0.625 12.708 hybrid contribution -0.035 -1.709 0.540 1.793 sum 0.644 10.965 -0.085 10.984 Atomic orbital electron populations 1.23914 0.95065 1.02709 0.95602 1.21700 0.95713 0.94667 1.04673 1.20753 0.99575 0.94643 1.01712 1.20812 1.00748 0.95779 0.79838 1.45890 1.12749 1.43915 1.13029 1.22900 0.88359 1.06846 0.91543 1.19952 0.91627 0.95559 0.98527 0.85589 1.23258 0.93884 0.94866 1.03518 1.19480 1.05434 0.84269 0.99645 0.83010 1.27918 0.93019 0.93548 0.93249 1.81228 1.09598 1.10469 1.09592 1.73743 1.12796 1.11662 1.13469 1.74657 0.99341 1.21950 1.21858 1.22470 0.90685 0.94216 0.85825 1.59278 1.06766 1.34990 1.16960 1.20004 0.98964 0.83281 0.91102 1.21857 1.31007 0.96068 1.10455 0.91001 1.24901 0.95181 0.98520 0.94689 1.69936 1.41860 1.22676 1.18350 0.86545 0.80104 0.81720 0.79906 1.19308 1.20968 1.20821 1.21909 0.90717 1.02619 0.89443 1.22649 0.94049 0.86084 0.98179 1.87972 1.21333 1.33122 1.87274 1.22650 0.82955 1.01828 0.99045 0.88569 0.86852 0.92567 0.91934 0.91803 0.87634 0.89260 0.87104 0.85175 0.95342 0.92994 0.92694 0.90896 0.89961 0.93333 0.92164 0.90398 0.94886 0.94343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 13.93 29.01 0.40 -1.37 16 2 C -0.17 -2.15 5.63 -101.07 -0.57 -2.72 16 3 C -0.11 -1.21 10.05 36.00 0.36 -0.85 16 4 C 0.15 2.18 6.13 -5.19 -0.03 2.15 16 5 N -0.46 -7.94 2.79 -115.37 -0.32 -8.26 16 6 C 0.17 2.72 7.59 -154.03 -1.17 1.55 16 7 C -0.03 -0.38 5.41 -91.77 -0.50 -0.88 16 8 H 0.13 1.21 7.44 -51.93 -0.39 0.83 16 9 C -0.12 -1.03 9.83 -26.73 -0.26 -1.29 16 10 C -0.07 -0.61 5.92 -93.40 -0.55 -1.16 16 11 H 0.15 1.37 8.14 -51.93 -0.42 0.94 16 12 C 0.24 2.56 15.56 -20.78 -0.32 2.24 16 13 N -0.43 -5.64 18.53 42.13 0.78 -4.86 16 14 N -0.28 -5.24 11.79 32.99 0.39 -4.85 16 15 N -0.33 -7.12 10.91 30.32 0.33 -6.79 16 16 C 0.42 8.53 5.77 -318.86 -1.84 6.69 16 17 N -0.46 -9.07 4.64 -175.88 -0.82 -9.89 16 18 C 0.19 4.35 4.93 -4.98 -0.02 4.33 16 19 C -0.56 -14.25 7.52 -34.44 -0.26 -14.51 16 20 H 0.07 1.95 6.40 -52.49 -0.34 1.61 16 21 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 22 N -0.89 -24.25 13.29 55.43 0.74 -23.51 16 23 Si 0.89 20.94 29.54 -169.99 -5.02 15.91 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 C 0.08 1.52 4.70 -3.82 -0.02 1.50 16 28 C 0.07 1.10 6.08 37.16 0.23 1.33 16 29 O -0.38 -6.09 10.64 -35.23 -0.37 -6.47 16 30 C 0.03 0.39 11.01 101.05 1.11 1.51 16 31 H 0.10 1.10 8.05 -52.49 -0.42 0.68 16 32 H 0.11 1.69 7.99 -52.48 -0.42 1.27 16 33 H 0.06 0.59 7.75 -51.93 -0.40 0.19 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.11 1.70 6.05 -51.93 -0.31 1.39 16 37 H 0.09 1.07 7.27 -51.93 -0.38 0.69 16 38 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.13 1.25 7.92 -51.93 -0.41 0.84 16 40 H 0.03 0.69 6.25 -51.93 -0.32 0.37 16 41 H 0.05 1.26 6.49 -51.93 -0.34 0.92 16 42 H 0.26 6.86 8.31 -40.82 -0.34 6.53 16 43 H 0.07 1.37 7.81 -51.93 -0.41 0.96 16 44 H 0.08 1.70 6.58 -51.93 -0.34 1.36 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.06 1.07 6.54 -51.93 -0.34 0.73 16 47 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 414.96 15.07 6.25 6.25 Total: -1.00 -30.97 414.96 -8.92 -39.89 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -7.34 Total: 2.29 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -3.54 Total: 0.28 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: 1.10 Total: -58.17 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.37 Total: -6.47 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -30.97 -8.92 -39.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356578944.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.613 kcal (2) G-P(sol) polarization free energy of solvation -30.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds