Wall clock time and date at job start Wed Apr 1 2020 03:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50693 * 119.99988 * 2 1 4 4 C 1.50697 * 119.99898 * 180.02562 * 2 1 3 5 5 N 1.46503 * 109.47339 * 94.99928 * 4 2 1 6 6 C 1.36729 * 127.14080 * 95.30092 * 5 4 2 7 7 C 1.50698 * 126.34503 * 359.71750 * 6 5 4 8 8 H 1.08999 * 115.55113 * 25.66875 * 7 6 5 9 9 C 1.53003 * 117.49935 * 171.37872 * 7 6 5 10 10 C 1.53002 * 117.49976 * 240.00313 * 7 6 5 11 11 H 1.08993 * 117.50069 * 359.97438 * 10 7 6 12 12 C 1.47203 * 117.50053 * 144.99990 * 10 7 6 13 13 N 5.53670 * 152.18563 * 344.94860 * 2 1 3 14 14 N 1.30289 * 107.31055 * 179.97438 * 6 5 4 15 15 N 1.28530 * 110.05490 * 359.97438 * 14 6 5 16 16 C 1.31221 * 109.85489 * 0.02562 * 15 14 6 17 17 N 1.38583 * 126.47190 * 179.97438 * 16 15 14 18 18 C 1.46901 * 111.00326 * 106.15482 * 17 16 15 19 19 C 1.50695 * 109.47094 * 300.23319 * 18 17 16 20 20 H 1.08000 * 120.00252 * 5.01586 * 19 18 17 21 21 C 1.37876 * 120.00007 * 185.01705 * 19 18 17 22 22 N 1.31520 * 120.00159 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00278 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46918 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47415 * 119.99676 * 23 21 19 26 26 H 1.48500 * 109.46985 * 239.99951 * 23 21 19 27 27 C 1.46904 * 111.00045 * 342.20039 * 17 16 15 28 28 C 1.52996 * 109.47400 * 195.88898 * 27 17 16 29 29 O 1.42901 * 109.46928 * 64.20829 * 28 27 17 30 30 C 1.42908 * 113.99980 * 180.02562 * 29 28 27 31 31 H 1.08000 * 120.00225 * 359.97438 * 1 2 3 32 32 H 1.08004 * 120.00222 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47552 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47448 * 300.00751 * 3 2 1 35 35 H 1.09007 * 109.47188 * 60.00150 * 3 2 1 36 36 H 1.09003 * 109.47232 * 335.00197 * 4 2 1 37 37 H 1.09001 * 109.47311 * 214.99972 * 4 2 1 38 38 H 1.09005 * 117.49914 * 214.97938 * 9 7 6 39 39 H 1.08990 * 117.49826 * 0.02562 * 9 7 6 40 40 H 1.09000 * 109.46809 * 60.23254 * 18 17 16 41 41 H 1.09000 * 109.46996 * 180.23028 * 18 17 16 42 42 H 0.96994 * 120.00147 * 180.02562 * 22 21 19 43 43 H 1.09000 * 109.46793 * 315.89452 * 27 17 16 44 44 H 1.08998 * 109.47052 * 75.88788 * 27 17 16 45 45 H 1.08993 * 109.47400 * 184.20629 * 28 27 17 46 46 H 1.09000 * 109.46951 * 304.21233 * 28 27 17 47 47 H 1.09000 * 109.46817 * 180.02562 * 30 29 28 48 48 H 1.09004 * 109.46645 * 300.00049 * 30 29 28 49 49 H 1.08996 * 109.46775 * 59.99440 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4119 -1.6673 -1.3767 6 6 3.5895 -1.4145 -2.0239 7 6 4.7862 -0.6978 -1.4535 8 1 4.8857 -0.7387 -0.3689 9 6 6.0725 -0.7007 -2.2820 10 6 5.2457 0.5806 -2.1573 11 1 4.6827 0.9031 -3.0332 12 6 5.7883 1.6612 -1.3179 13 7 6.2070 2.4948 -0.6709 14 7 3.4833 -1.9032 -3.2270 15 7 2.3277 -2.4440 -3.3827 16 6 1.6288 -2.3277 -2.2782 17 7 0.3390 -2.7884 -2.0671 18 6 0.3391 -3.9781 -1.2054 19 6 1.1468 -5.0705 -1.8575 20 1 1.6799 -4.8732 -2.7758 21 6 1.2051 -6.3220 -1.2818 22 7 0.5563 -6.5622 -0.1632 23 14 2.2068 -7.6760 -2.0897 24 1 2.8368 -7.1535 -3.3288 25 1 3.2631 -8.1365 -1.1530 26 1 1.3162 -8.8147 -2.4299 27 6 -0.3375 -3.0620 -3.3421 28 6 -1.8443 -3.1804 -3.1049 29 8 -2.3549 -1.9258 -2.6494 30 6 -3.7613 -1.9281 -2.3960 31 1 -0.5400 0.9353 0.0004 32 1 -0.5401 -0.9353 0.0004 33 1 3.1351 1.1060 -0.0005 34 1 1.8001 1.8767 -0.8899 35 1 1.8002 1.8766 0.8900 36 1 1.4385 -2.0857 0.4334 37 1 2.9742 -1.1991 0.5889 38 1 7.0186 -0.7437 -1.7424 39 1 6.0530 -1.2206 -3.2398 40 1 0.7794 -3.7275 -0.2403 41 1 -0.6851 -4.3211 -1.0594 42 1 0.5976 -7.4425 0.2419 43 1 -0.1423 -2.2470 -4.0392 44 1 0.0389 -3.9956 -3.7601 45 1 -2.3382 -3.4570 -4.0363 46 1 -2.0346 -3.9451 -2.3517 47 1 -4.0705 -0.9402 -2.0546 48 1 -4.2952 -2.1790 -3.3126 49 1 -3.9909 -2.6667 -1.6281 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356578944.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:14 Heat of formation + Delta-G solvation = 105.682045 kcal Electronic energy + Delta-G solvation = -31599.311705 eV Core-core repulsion = 27564.651872 eV Total energy + Delta-G solvation = -4034.659833 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.81638 -39.56523 -39.07339 -37.88365 -37.58282 -36.65906 -34.66480 -34.24933 -31.32196 -30.38307 -28.64824 -28.21753 -27.65697 -26.92841 -25.87036 -24.94181 -24.42441 -23.20215 -21.65705 -20.85649 -19.67360 -18.94867 -18.77422 -17.90782 -17.50926 -17.27323 -16.98396 -16.60081 -16.46757 -15.98303 -15.64687 -15.53581 -15.34602 -15.00681 -14.76276 -14.64539 -14.60744 -14.12020 -14.05187 -13.78188 -13.41235 -13.29953 -13.09228 -12.94131 -12.84934 -12.79700 -12.73798 -12.59027 -12.43564 -12.37691 -12.30160 -12.12854 -12.00570 -11.82609 -11.75972 -11.56317 -11.18923 -10.83276 -10.64564 -10.46228 -10.24224 -10.07894 -9.02388 -8.22967 -6.37430 0.82503 0.99686 1.31771 1.36450 1.47046 1.49561 1.68129 1.83132 2.04134 2.35632 2.72309 2.98104 2.99547 3.06469 3.12251 3.48183 3.55145 3.68943 3.77647 3.79287 4.08392 4.15658 4.20762 4.26221 4.38165 4.48127 4.53762 4.60865 4.62924 4.64322 4.67489 4.80123 4.82883 4.89429 4.93319 5.01883 5.03857 5.06121 5.10595 5.16025 5.18955 5.23260 5.27289 5.64801 5.68162 5.74978 5.89764 5.90615 6.04699 6.39386 6.51139 6.54237 6.78728 7.33361 7.95855 8.80940 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.008693 B = 0.004501 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3220.160635 B = 6219.941346 C = 8128.267068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.164 4.164 3 C -0.104 4.104 4 C 0.145 3.855 5 N -0.464 5.464 6 C 0.193 3.807 7 C -0.054 4.054 8 H 0.147 0.853 9 C -0.098 4.098 10 C -0.046 4.046 11 H 0.159 0.841 12 C 0.265 3.735 13 N -0.469 5.469 14 N -0.306 5.306 15 N -0.364 5.364 16 C 0.398 3.602 17 N -0.446 5.446 18 C 0.211 3.789 19 C -0.556 4.556 20 H 0.055 0.945 21 C 0.029 3.971 22 N -0.915 5.915 23 Si 0.943 3.057 24 H -0.278 1.278 25 H -0.279 1.279 26 H -0.273 1.273 27 C 0.085 3.915 28 C 0.078 3.922 29 O -0.397 6.397 30 C 0.027 3.973 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.118 0.882 38 H 0.138 0.862 39 H 0.125 0.875 40 H 0.014 0.986 41 H 0.036 0.964 42 H 0.266 0.734 43 H 0.071 0.929 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.043 0.957 47 H 0.097 0.903 48 H 0.050 0.950 49 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.919 12.761 -0.409 12.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.165 4.165 3 C -0.160 4.160 4 C 0.024 3.976 5 N -0.156 5.156 6 C -0.074 4.074 7 C -0.076 4.076 8 H 0.165 0.835 9 C -0.137 4.137 10 C -0.069 4.069 11 H 0.176 0.824 12 C -0.051 4.051 13 N -0.146 5.146 14 N -0.146 5.146 15 N -0.209 5.209 16 C 0.041 3.959 17 N -0.169 5.169 18 C 0.086 3.914 19 C -0.594 4.594 20 H 0.073 0.927 21 C -0.171 4.171 22 N -0.554 5.554 23 Si 0.770 3.230 24 H -0.203 1.203 25 H -0.205 1.205 26 H -0.199 1.199 27 C -0.043 4.043 28 C 0.001 3.999 29 O -0.317 6.317 30 C -0.069 4.069 31 H 0.134 0.866 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.136 0.864 38 H 0.156 0.844 39 H 0.143 0.857 40 H 0.032 0.968 41 H 0.054 0.946 42 H 0.075 0.925 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.061 0.939 47 H 0.115 0.885 48 H 0.069 0.931 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.676 14.029 -0.426 14.136 hybrid contribution -0.324 -2.060 0.469 2.138 sum 1.353 11.969 0.043 12.045 Atomic orbital electron populations 1.23914 0.95334 1.02530 0.95981 1.21770 0.95636 0.94825 1.04265 1.20733 0.99565 0.93316 1.02434 1.20999 1.01973 0.95918 0.78714 1.46136 1.12634 1.43290 1.13583 1.23780 0.88727 1.04403 0.90520 1.20215 0.90803 0.96754 0.99819 0.83518 1.23396 0.93837 0.93513 1.02960 1.19392 1.05035 0.83567 0.98861 0.82397 1.27902 0.91973 0.92915 0.92352 1.81273 1.10903 1.11657 1.10716 1.73670 1.12188 1.13413 1.15285 1.74547 1.00456 1.22809 1.23044 1.22540 0.91016 0.95675 0.86672 1.59237 1.07287 1.33354 1.17015 1.19588 0.97195 0.83787 0.90838 1.21955 1.30795 0.96955 1.09737 0.92682 1.25509 0.96130 1.00300 0.95199 1.70007 1.42930 1.23228 1.19262 0.85721 0.78993 0.79707 0.78610 1.20314 1.20524 1.19869 1.21850 0.92308 1.01191 0.88950 1.22464 0.92656 0.86013 0.98792 1.87926 1.23736 1.32529 1.87465 1.22865 0.80956 1.03085 1.00002 0.86624 0.89217 0.91919 0.92027 0.90173 0.89947 0.86419 0.84375 0.85713 0.96825 0.94573 0.92464 0.91002 0.92377 0.90849 0.93917 0.88472 0.93108 0.94425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 13.93 67.78 0.94 -2.66 16 2 C -0.16 -4.05 5.63 -16.49 -0.09 -4.14 16 3 C -0.10 -2.01 10.05 71.23 0.72 -1.30 16 4 C 0.15 4.13 6.13 85.63 0.53 4.65 16 5 N -0.46 -15.86 2.79 -518.91 -1.45 -17.31 16 6 C 0.19 5.98 7.59 137.64 1.04 7.03 16 7 C -0.05 -1.05 5.41 -11.54 -0.06 -1.11 16 8 H 0.15 2.30 7.44 -2.39 -0.02 2.28 16 9 C -0.10 -1.43 9.83 30.60 0.30 -1.13 16 10 C -0.05 -0.71 5.92 -12.60 -0.07 -0.79 16 11 H 0.16 2.40 8.14 -2.39 -0.02 2.38 16 12 C 0.27 4.86 15.56 89.45 1.39 6.25 16 13 N -0.47 -11.07 18.53 20.00 0.37 -10.70 16 14 N -0.31 -11.59 11.79 -49.55 -0.58 -12.18 16 15 N -0.36 -15.93 10.91 -58.00 -0.63 -16.56 16 16 C 0.40 16.43 5.77 260.11 1.50 17.93 16 17 N -0.45 -18.44 4.64 -710.36 -3.29 -21.73 16 18 C 0.21 10.08 4.93 85.56 0.42 10.50 16 19 C -0.56 -29.43 7.52 25.60 0.19 -29.24 16 20 H 0.06 3.09 6.40 -2.91 -0.02 3.07 16 21 C 0.03 1.58 5.46 84.65 0.46 2.04 16 22 N -0.91 -50.63 13.29 21.45 0.28 -50.35 16 23 Si 0.94 43.50 29.54 68.60 2.03 45.52 16 24 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 25 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 26 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 27 C 0.08 3.32 4.70 86.30 0.41 3.72 16 28 C 0.08 2.60 6.08 71.98 0.44 3.04 16 29 O -0.40 -12.75 10.64 -148.98 -1.58 -14.34 16 30 C 0.03 0.63 11.01 113.37 1.25 1.88 16 31 H 0.12 2.49 8.05 -2.91 -0.02 2.47 16 32 H 0.09 2.76 7.99 -2.91 -0.02 2.74 16 33 H 0.06 1.13 7.75 -2.39 -0.02 1.11 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.08 2.74 6.05 -2.39 -0.01 2.73 16 37 H 0.12 2.60 7.27 -2.39 -0.02 2.58 16 38 H 0.14 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.12 2.09 7.92 -2.39 -0.02 2.07 16 40 H 0.01 0.70 6.25 -2.39 -0.01 0.68 16 41 H 0.04 1.84 6.49 -2.39 -0.02 1.82 16 42 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 43 H 0.07 2.80 7.81 -2.39 -0.02 2.78 16 44 H 0.06 2.53 6.58 -2.39 -0.02 2.52 16 45 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.04 1.57 6.54 -2.39 -0.02 1.56 16 47 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 49 H 0.04 0.87 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -68.66 414.96 5.46 -63.20 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.96 Total: 17.76 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 9.36 Total: 16.69 kcal Atomic # 7 Polarization: -123.53 SS G_CDS: -5.30 Total: -128.83 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -1.58 Total: -14.34 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -68.66 5.46 -63.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356578944.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.877 kcal (2) G-P(sol) polarization free energy of solvation -68.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds