Wall clock time and date at job start Wed Apr 1 2020 04:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46497 * 109.47199 * 2 1 4 4 C 1.37448 * 126.48663 * 265.03033 * 3 2 1 5 5 C 1.34482 * 106.94228 * 179.97438 * 4 3 2 6 6 N 1.34277 * 108.29498 * 0.26382 * 5 4 3 7 7 C 1.31126 * 109.29580 * 359.55291 * 6 5 4 8 8 N 1.38923 * 125.78276 * 180.17290 * 7 6 5 9 9 C 1.34776 * 119.99716 * 0.32041 * 8 7 6 10 10 O 1.21277 * 120.00367 * 359.97438 * 9 8 7 11 11 C 1.50703 * 120.00082 * 179.97438 * 9 8 7 12 12 C 1.52995 * 109.47216 * 179.97438 * 11 9 8 13 13 C 1.50696 * 109.46919 * 179.97438 * 12 11 9 14 14 C 1.39874 * 126.04198 * 269.69169 * 13 12 11 15 15 C 1.50709 * 125.89594 * 0.02562 * 14 13 12 16 16 N 1.30834 * 108.20426 * 179.82012 * 14 13 12 17 17 N 1.40081 * 108.20551 * 0.43926 * 16 14 13 18 18 C 1.46504 * 126.03656 * 179.74246 * 17 16 14 19 19 C 1.50697 * 109.46873 * 269.97543 * 18 17 16 20 20 H 1.08001 * 120.00069 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99968 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99578 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00025 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47282 * 59.99615 * 23 21 19 25 25 H 1.48498 * 109.47130 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47047 * 299.99441 * 23 21 19 27 27 C 1.34947 * 107.92599 * 359.71676 * 17 16 14 28 28 C 1.50700 * 126.12634 * 179.97438 * 27 17 16 29 29 H 1.08991 * 109.47003 * 60.00081 * 1 2 3 30 30 H 1.09002 * 109.47041 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46824 * 299.99753 * 1 2 3 32 32 H 1.09000 * 109.46824 * 240.00246 * 2 1 3 33 33 H 1.09004 * 109.47119 * 120.00275 * 2 1 3 34 34 H 1.07999 * 126.53107 * 359.93597 * 4 3 2 35 35 H 1.08002 * 125.84862 * 179.97438 * 5 4 3 36 36 H 0.96995 * 120.00318 * 180.31526 * 8 7 6 37 37 H 1.08999 * 109.46785 * 299.99846 * 11 9 8 38 38 H 1.09002 * 109.46817 * 59.99847 * 11 9 8 39 39 H 1.08999 * 109.47383 * 299.99805 * 12 11 9 40 40 H 1.09002 * 109.47087 * 60.00338 * 12 11 9 41 41 H 1.08996 * 109.46850 * 89.99801 * 15 14 13 42 42 H 1.08996 * 109.47103 * 209.99991 * 15 14 13 43 43 H 1.09001 * 109.47077 * 329.99839 * 15 14 13 44 44 H 1.08998 * 109.47033 * 29.97153 * 18 17 16 45 45 H 1.08995 * 109.46807 * 149.97602 * 18 17 16 46 46 H 0.97002 * 119.99510 * 180.02562 * 22 21 19 47 47 H 1.09004 * 109.47174 * 270.02452 * 28 27 17 48 48 H 1.08994 * 109.47102 * 30.02944 * 28 27 17 49 49 H 1.09005 * 109.46969 * 150.02911 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3811 2.1198 -1.1009 5 6 2.7663 3.3279 -0.6528 6 7 2.6521 3.3372 0.6851 7 6 2.1980 2.1754 1.0893 8 7 1.9486 1.8147 2.4075 9 6 2.1687 2.6984 3.4011 10 8 2.5849 3.8082 3.1444 11 6 1.8977 2.3074 4.8310 12 6 2.2283 3.4830 5.7527 13 6 1.9567 3.0922 7.1825 14 6 0.7481 3.2606 7.8663 15 6 -0.5109 3.8649 7.2997 16 7 0.8981 2.7988 9.0812 17 7 2.2118 2.3304 9.2123 18 6 2.7992 1.7372 10.4162 19 6 3.4172 2.8218 11.2603 20 1 3.3769 3.8501 10.9326 21 6 4.0351 2.5012 12.4505 22 7 4.0846 1.2490 12.8492 23 14 4.8018 3.8456 13.4966 24 1 3.7566 4.8254 13.8874 25 1 5.3971 3.2443 14.7169 26 1 5.8607 4.5358 12.7172 27 6 2.8405 2.5217 8.0336 28 6 4.2709 2.1646 7.7215 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.3612 1.7923 -2.1298 35 1 3.1129 4.1482 -1.2638 36 1 1.6160 0.9270 2.6129 37 1 0.8462 2.0427 4.9422 38 1 2.5180 1.4516 5.0975 39 1 3.2799 3.7473 5.6414 40 1 1.6083 4.3391 5.4863 41 1 -1.1204 3.0805 6.8512 42 1 -1.0725 4.3496 8.0983 43 1 -0.2502 4.6018 6.5400 44 1 2.0217 1.2304 10.9879 45 1 3.5665 1.0182 10.1295 46 1 4.5189 1.0235 13.6867 47 1 4.9165 3.0104 7.9583 48 1 4.5685 1.3022 8.3177 49 1 4.3623 1.9232 6.6624 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363017210.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:37 Heat of formation + Delta-G solvation = 93.866017 kcal Electronic energy + Delta-G solvation = -29460.336724 eV Core-core repulsion = 25425.164510 eV Total energy + Delta-G solvation = -4035.172214 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.32466 -40.62983 -39.59350 -35.45024 -34.86556 -34.37832 -33.38729 -32.48831 -30.53948 -30.40167 -29.00143 -28.73090 -26.77254 -25.87697 -24.46135 -23.97528 -22.55481 -21.97816 -20.98174 -19.81463 -18.81509 -18.64446 -18.29578 -16.92254 -16.67855 -16.28656 -16.05962 -15.51670 -15.23530 -14.96192 -14.52460 -14.36463 -14.06016 -13.97185 -13.77294 -13.65659 -13.13416 -13.05548 -12.91750 -12.67875 -12.58385 -12.48052 -12.32209 -12.15751 -11.96972 -11.79662 -11.66439 -11.33927 -11.27146 -10.98998 -10.82359 -10.78959 -10.73592 -10.28193 -10.22367 -9.87154 -9.76265 -9.68679 -9.60393 -8.64590 -8.18844 -8.07687 -7.49025 -6.26766 -4.34014 1.66804 1.95718 2.56516 2.74910 2.91738 3.20932 3.23520 3.27089 3.31333 3.37712 3.60744 4.03802 4.29637 4.34023 4.37254 4.56125 4.64892 4.94542 5.03733 5.06827 5.10223 5.14946 5.21479 5.32594 5.34958 5.40125 5.45266 5.59558 5.64577 5.71801 5.81398 5.93844 5.95594 5.99145 6.01913 6.05678 6.24048 6.37389 6.44309 6.47306 6.54303 6.84646 6.93455 6.95560 7.02128 7.11199 7.50853 7.65996 7.87976 7.93180 8.04984 8.15284 8.66254 8.74988 9.32432 10.80785 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.019786 B = 0.001963 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.833709 B =14259.163156 C =14434.605005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.099 3.901 3 N -0.478 5.478 4 C -0.067 4.067 5 C -0.013 4.013 6 N -0.471 5.471 7 C 0.437 3.563 8 N -0.647 5.647 9 C 0.511 3.489 10 O -0.469 6.469 11 C -0.126 4.126 12 C -0.012 4.012 13 C -0.269 4.269 14 C 0.051 3.949 15 C -0.065 4.065 16 N -0.297 5.297 17 N -0.325 5.325 18 C 0.257 3.743 19 C -0.536 4.536 20 H 0.063 0.937 21 C 0.065 3.935 22 N -0.892 5.892 23 Si 0.907 3.093 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.274 1.274 27 C 0.095 3.905 28 C -0.087 4.087 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.176 0.824 35 H 0.172 0.828 36 H 0.412 0.588 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.051 0.949 45 H 0.051 0.949 46 H 0.268 0.732 47 H 0.078 0.922 48 H 0.072 0.928 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.797 -5.970 -27.644 28.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.024 4.024 3 N -0.169 5.169 4 C -0.197 4.197 5 C -0.161 4.161 6 N -0.195 5.195 7 C 0.086 3.914 8 N -0.301 5.301 9 C 0.297 3.703 10 O -0.336 6.336 11 C -0.166 4.166 12 C -0.051 4.051 13 C -0.282 4.282 14 C -0.113 4.113 15 C -0.124 4.124 16 N -0.121 5.121 17 N -0.104 5.104 18 C 0.140 3.860 19 C -0.574 4.574 20 H 0.082 0.918 21 C -0.138 4.138 22 N -0.530 5.530 23 Si 0.733 3.267 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.037 4.037 28 C -0.145 4.145 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.106 0.894 34 H 0.193 0.807 35 H 0.189 0.811 36 H 0.248 0.752 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.078 0.922 47 H 0.096 0.904 48 H 0.091 0.909 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.770 -4.992 -25.784 26.889 hybrid contribution 0.443 -0.634 -0.523 0.933 sum -5.328 -5.626 -26.307 27.425 Atomic orbital electron populations 1.22199 0.93961 1.03359 1.03486 1.21840 0.95733 0.80122 1.04686 1.45576 1.52709 1.12585 1.06038 1.22472 1.11336 0.94092 0.91811 1.22297 1.05569 0.97274 0.90912 1.70868 1.20477 1.16843 1.11309 1.19697 1.02233 0.87569 0.81923 1.42857 1.67646 1.18304 1.01314 1.21282 0.77521 0.84650 0.86830 1.90837 1.39735 1.19712 1.83294 1.21762 1.04180 1.02158 0.88532 1.19412 1.02177 0.95153 0.88316 1.19306 0.94461 1.17033 0.97351 1.21949 0.96065 1.01172 0.92112 1.20034 0.92533 0.99629 1.00181 1.77278 0.97815 1.18924 1.18075 1.49251 1.06884 1.43758 1.10537 1.19647 0.93755 0.93949 0.78684 1.21267 1.36928 0.93892 1.05325 0.91841 1.24928 0.95683 0.96020 0.97164 1.69909 1.43359 1.16989 1.22771 0.86407 0.79506 0.81430 0.79319 1.19943 1.20957 1.19913 1.20785 0.95633 1.00064 0.87200 1.20358 0.90036 1.02685 1.01404 0.91569 0.90279 0.91831 0.88519 0.89443 0.80709 0.81118 0.75216 0.88600 0.88686 0.91123 0.90995 0.91631 0.91562 0.91157 0.93089 0.93111 0.92215 0.90381 0.90941 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.59 10.24 37.16 0.38 -0.21 16 2 C 0.10 0.39 6.63 -4.04 -0.03 0.36 16 3 N -0.48 -3.87 2.79 -117.43 -0.33 -4.20 16 4 C -0.07 -0.53 11.59 -16.36 -0.19 -0.72 16 5 C -0.01 -0.14 11.85 -17.81 -0.21 -0.35 16 6 N -0.47 -6.85 9.43 -13.83 -0.13 -6.98 16 7 C 0.44 5.07 8.43 -319.11 -2.69 2.38 16 8 N -0.65 -6.27 5.40 -12.53 -0.07 -6.33 16 9 C 0.51 6.30 7.79 -10.98 -0.09 6.21 16 10 O -0.47 -7.92 14.66 5.56 0.08 -7.84 16 11 C -0.13 -1.35 5.68 -27.88 -0.16 -1.51 16 12 C -0.01 -0.16 4.41 -27.89 -0.12 -0.29 16 13 C -0.27 -4.70 5.35 -105.05 -0.56 -5.27 16 14 C 0.05 0.96 7.22 -82.40 -0.59 0.37 16 15 C -0.07 -0.91 10.26 36.01 0.37 -0.54 16 16 N -0.30 -6.75 12.58 33.67 0.42 -6.33 16 17 N -0.32 -7.49 3.60 -58.31 -0.21 -7.70 16 18 C 0.26 6.55 6.00 -5.19 -0.03 6.52 16 19 C -0.54 -14.79 9.39 -34.44 -0.32 -15.12 16 20 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 21 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 22 N -0.89 -25.08 13.29 55.43 0.74 -24.34 16 23 Si 0.91 21.26 29.54 -169.99 -5.02 16.24 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 27 C 0.09 1.85 6.93 -82.26 -0.57 1.28 16 28 C -0.09 -1.40 9.72 36.01 0.35 -1.05 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.09 0.24 7.72 -51.93 -0.40 -0.16 16 34 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.17 1.44 8.06 -52.49 -0.42 1.01 16 36 H 0.41 2.35 8.11 -40.82 -0.33 2.02 16 37 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.04 7.73 -51.93 -0.40 0.64 16 40 H 0.07 1.03 7.20 -51.93 -0.37 0.66 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.07 0.87 7.25 -51.93 -0.38 0.49 16 44 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.05 1.27 7.05 -51.93 -0.37 0.91 16 46 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 47 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 48 H 0.07 1.20 7.08 -51.93 -0.37 0.83 16 49 H 0.07 0.92 7.77 -51.93 -0.40 0.52 16 LS Contribution 413.10 15.07 6.23 6.23 Total: -1.00 -36.82 413.10 -10.49 -47.31 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -7.64 Total: 0.21 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -4.56 Total: -6.25 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: 0.42 Total: -55.89 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: 0.08 Total: -7.84 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -36.82 -10.49 -47.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363017210.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.176 kcal (2) G-P(sol) polarization free energy of solvation -36.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds