Wall clock time and date at job start Wed Apr 1 2020 04:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46497 * 109.47199 * 2 1 4 4 C 1.37448 * 126.48663 * 265.03033 * 3 2 1 5 5 C 1.34482 * 106.94228 * 179.97438 * 4 3 2 6 6 N 1.34277 * 108.29498 * 0.26382 * 5 4 3 7 7 C 1.31126 * 109.29580 * 359.55291 * 6 5 4 8 8 N 1.38923 * 125.78276 * 180.17290 * 7 6 5 9 9 C 1.34776 * 119.99716 * 0.32041 * 8 7 6 10 10 O 1.21277 * 120.00367 * 359.97438 * 9 8 7 11 11 C 1.50703 * 120.00082 * 179.97438 * 9 8 7 12 12 C 1.52995 * 109.47216 * 179.97438 * 11 9 8 13 13 C 1.50696 * 109.46919 * 179.97438 * 12 11 9 14 14 C 1.39874 * 126.04198 * 269.69169 * 13 12 11 15 15 C 1.50709 * 125.89594 * 0.02562 * 14 13 12 16 16 N 1.30834 * 108.20426 * 179.82012 * 14 13 12 17 17 N 1.40081 * 108.20551 * 0.43926 * 16 14 13 18 18 C 1.46504 * 126.03656 * 179.74246 * 17 16 14 19 19 C 1.50697 * 109.46873 * 269.97543 * 18 17 16 20 20 H 1.08001 * 120.00069 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99968 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99578 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00025 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47282 * 59.99615 * 23 21 19 25 25 H 1.48498 * 109.47130 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47047 * 299.99441 * 23 21 19 27 27 C 1.34947 * 107.92599 * 359.71676 * 17 16 14 28 28 C 1.50700 * 126.12634 * 179.97438 * 27 17 16 29 29 H 1.08991 * 109.47003 * 60.00081 * 1 2 3 30 30 H 1.09002 * 109.47041 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46824 * 299.99753 * 1 2 3 32 32 H 1.09000 * 109.46824 * 240.00246 * 2 1 3 33 33 H 1.09004 * 109.47119 * 120.00275 * 2 1 3 34 34 H 1.07999 * 126.53107 * 359.93597 * 4 3 2 35 35 H 1.08002 * 125.84862 * 179.97438 * 5 4 3 36 36 H 0.96995 * 120.00318 * 180.31526 * 8 7 6 37 37 H 1.08999 * 109.46785 * 299.99846 * 11 9 8 38 38 H 1.09002 * 109.46817 * 59.99847 * 11 9 8 39 39 H 1.08999 * 109.47383 * 299.99805 * 12 11 9 40 40 H 1.09002 * 109.47087 * 60.00338 * 12 11 9 41 41 H 1.08996 * 109.46850 * 89.99801 * 15 14 13 42 42 H 1.08996 * 109.47103 * 209.99991 * 15 14 13 43 43 H 1.09001 * 109.47077 * 329.99839 * 15 14 13 44 44 H 1.08998 * 109.47033 * 29.97153 * 18 17 16 45 45 H 1.08995 * 109.46807 * 149.97602 * 18 17 16 46 46 H 0.97002 * 119.99510 * 180.02562 * 22 21 19 47 47 H 1.09004 * 109.47174 * 270.02452 * 28 27 17 48 48 H 1.08994 * 109.47102 * 30.02944 * 28 27 17 49 49 H 1.09005 * 109.46969 * 150.02911 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3811 2.1198 -1.1009 5 6 2.7663 3.3279 -0.6528 6 7 2.6521 3.3372 0.6851 7 6 2.1980 2.1754 1.0893 8 7 1.9486 1.8147 2.4075 9 6 2.1687 2.6984 3.4011 10 8 2.5849 3.8082 3.1444 11 6 1.8977 2.3074 4.8310 12 6 2.2283 3.4830 5.7527 13 6 1.9567 3.0922 7.1825 14 6 0.7481 3.2606 7.8663 15 6 -0.5109 3.8649 7.2997 16 7 0.8981 2.7988 9.0812 17 7 2.2118 2.3304 9.2123 18 6 2.7992 1.7372 10.4162 19 6 3.4172 2.8218 11.2603 20 1 3.3769 3.8501 10.9326 21 6 4.0351 2.5012 12.4505 22 7 4.0846 1.2490 12.8492 23 14 4.8018 3.8456 13.4966 24 1 3.7566 4.8254 13.8874 25 1 5.3971 3.2443 14.7169 26 1 5.8607 4.5358 12.7172 27 6 2.8405 2.5217 8.0336 28 6 4.2709 2.1646 7.7215 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.3612 1.7923 -2.1298 35 1 3.1129 4.1482 -1.2638 36 1 1.6160 0.9270 2.6129 37 1 0.8462 2.0427 4.9422 38 1 2.5180 1.4516 5.0975 39 1 3.2799 3.7473 5.6414 40 1 1.6083 4.3391 5.4863 41 1 -1.1204 3.0805 6.8512 42 1 -1.0725 4.3496 8.0983 43 1 -0.2502 4.6018 6.5400 44 1 2.0217 1.2304 10.9879 45 1 3.5665 1.0182 10.1295 46 1 4.5189 1.0235 13.6867 47 1 4.9165 3.0104 7.9583 48 1 4.5685 1.3022 8.3177 49 1 4.3623 1.9232 6.6624 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363017210.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:36 Heat of formation + Delta-G solvation = 72.658576 kcal Electronic energy + Delta-G solvation = -29461.256348 eV Core-core repulsion = 25425.164510 eV Total energy + Delta-G solvation = -4036.091838 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.02851 -42.14056 -40.55516 -36.13527 -36.03469 -35.58655 -34.85013 -34.18135 -31.82670 -30.99785 -30.52594 -29.56740 -28.02479 -27.60242 -25.59623 -24.64902 -24.05540 -22.92631 -21.73518 -20.65775 -20.29485 -20.12249 -18.91965 -18.80620 -17.84313 -17.22691 -17.02686 -16.71095 -16.25971 -16.07087 -15.99677 -15.43206 -14.98132 -14.82571 -14.64365 -14.56836 -14.40357 -14.36583 -14.09247 -13.91000 -13.65030 -13.50118 -13.34239 -13.24820 -13.18780 -12.93402 -12.85056 -12.76216 -12.63536 -12.57102 -12.23427 -12.21175 -11.85649 -11.72133 -11.66393 -11.20677 -11.09311 -10.74882 -10.56075 -10.53828 -9.82476 -9.02268 -8.81184 -8.34794 -6.52167 0.93302 1.16776 1.29035 1.36268 1.37516 1.46616 1.73452 1.94021 1.95810 2.33076 2.34827 2.40352 2.94698 3.55965 3.76088 3.88144 3.95262 4.00233 4.09535 4.22010 4.24302 4.34265 4.36276 4.45681 4.57141 4.60478 4.66392 4.73248 4.74471 4.78564 4.84446 4.85155 4.89007 4.90953 4.96512 4.98731 5.06073 5.15807 5.21930 5.32350 5.36501 5.45117 5.50724 5.57427 5.80578 5.80884 6.06693 6.18807 6.31314 6.32938 6.62724 7.11078 7.13204 7.18992 7.40193 8.70884 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.019786 B = 0.001963 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.833709 B =14259.163156 C =14434.605005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.091 3.909 3 N -0.468 5.468 4 C -0.040 4.040 5 C -0.053 4.053 6 N -0.528 5.528 7 C 0.411 3.589 8 N -0.631 5.631 9 C 0.516 3.484 10 O -0.522 6.522 11 C -0.114 4.114 12 C -0.006 4.006 13 C -0.256 4.256 14 C 0.056 3.944 15 C -0.064 4.064 16 N -0.350 5.350 17 N -0.355 5.355 18 C 0.276 3.724 19 C -0.553 4.553 20 H 0.046 0.954 21 C 0.022 3.978 22 N -0.917 5.917 23 Si 0.969 3.031 24 H -0.276 1.276 25 H -0.271 1.271 26 H -0.266 1.266 27 C 0.080 3.920 28 C -0.084 4.084 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.050 0.950 32 H 0.121 0.879 33 H 0.103 0.897 34 H 0.216 0.784 35 H 0.180 0.820 36 H 0.430 0.570 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.020 0.980 45 H 0.048 0.952 46 H 0.274 0.726 47 H 0.074 0.926 48 H 0.064 0.936 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.141 -7.084 -30.027 31.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.030 4.030 3 N -0.159 5.159 4 C -0.172 4.172 5 C -0.200 4.200 6 N -0.254 5.254 7 C 0.059 3.941 8 N -0.286 5.286 9 C 0.304 3.696 10 O -0.393 6.393 11 C -0.154 4.154 12 C -0.045 4.045 13 C -0.268 4.268 14 C -0.109 4.109 15 C -0.122 4.122 16 N -0.173 5.173 17 N -0.135 5.135 18 C 0.156 3.844 19 C -0.592 4.592 20 H 0.064 0.936 21 C -0.179 4.179 22 N -0.555 5.555 23 Si 0.793 3.207 24 H -0.202 1.202 25 H -0.196 1.196 26 H -0.191 1.191 27 C -0.050 4.050 28 C -0.142 4.142 29 H 0.077 0.923 30 H 0.119 0.881 31 H 0.069 0.931 32 H 0.139 0.861 33 H 0.121 0.879 34 H 0.233 0.767 35 H 0.197 0.803 36 H 0.270 0.730 37 H 0.137 0.863 38 H 0.132 0.868 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.112 0.888 42 H 0.082 0.918 43 H 0.108 0.892 44 H 0.038 0.962 45 H 0.066 0.934 46 H 0.083 0.917 47 H 0.092 0.908 48 H 0.083 0.917 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.137 -6.176 -28.203 29.516 hybrid contribution 0.472 -0.315 0.039 0.569 sum -5.665 -6.491 -28.164 29.452 Atomic orbital electron populations 1.22173 0.93493 1.04427 1.02474 1.22236 0.96054 0.77957 1.06737 1.45818 1.51454 1.13696 1.04915 1.23089 1.08019 0.92847 0.93234 1.22638 1.07837 0.99285 0.90223 1.70711 1.22030 1.19257 1.13409 1.19739 1.03385 0.87952 0.82974 1.42567 1.66764 1.18738 1.00527 1.21427 0.76520 0.84091 0.87604 1.90827 1.42405 1.21969 1.84097 1.21635 1.05989 1.01006 0.86748 1.19366 1.01817 0.96566 0.86732 1.19631 0.93387 1.15237 0.98501 1.22769 0.97977 0.99184 0.90977 1.20219 0.90768 1.00731 1.00491 1.77217 0.98230 1.21321 1.20583 1.48999 1.07707 1.45962 1.10841 1.19118 0.92448 0.93290 0.79509 1.21404 1.37795 0.93550 1.06408 0.93563 1.25728 0.95849 0.98237 0.98081 1.69990 1.43703 1.18540 1.23302 0.85440 0.78636 0.78628 0.78009 1.20181 1.19579 1.19081 1.21444 0.97157 1.00057 0.86319 1.20449 0.88059 1.02102 1.03556 0.92319 0.88139 0.93108 0.86058 0.87921 0.76720 0.80297 0.72982 0.86278 0.86767 0.91827 0.91074 0.88823 0.91797 0.89162 0.96223 0.93423 0.91734 0.90771 0.91741 0.87428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.64 10.24 71.98 0.74 0.10 16 2 C 0.09 0.39 6.63 86.38 0.57 0.96 16 3 N -0.47 -6.44 2.79 -525.45 -1.47 -7.91 16 4 C -0.04 -0.55 11.59 82.95 0.96 0.41 16 5 C -0.05 -1.14 11.85 83.46 0.99 -0.15 16 6 N -0.53 -15.49 9.43 -197.67 -1.86 -17.35 16 7 C 0.41 9.06 8.43 260.20 2.19 11.25 16 8 N -0.63 -11.09 5.40 -311.96 -1.68 -12.78 16 9 C 0.52 12.01 7.79 87.66 0.68 12.69 16 10 O -0.52 -17.65 14.66 -3.02 -0.04 -17.70 16 11 C -0.11 -2.15 5.68 29.85 0.17 -1.98 16 12 C -0.01 -0.15 4.41 29.85 0.13 -0.02 16 13 C -0.26 -8.68 5.35 -20.14 -0.11 -8.79 16 14 C 0.06 2.04 7.22 43.11 0.31 2.35 16 15 C -0.06 -1.66 10.26 71.24 0.73 -0.93 16 16 N -0.35 -16.25 12.58 -47.38 -0.60 -16.85 16 17 N -0.36 -16.89 3.60 -338.40 -1.22 -18.11 16 18 C 0.28 14.70 6.00 85.63 0.51 15.21 16 19 C -0.55 -31.59 9.39 25.60 0.24 -31.35 16 20 H 0.05 2.74 7.81 -2.91 -0.02 2.71 16 21 C 0.02 1.23 5.46 84.66 0.46 1.69 16 22 N -0.92 -52.36 13.29 21.45 0.28 -52.07 16 23 Si 0.97 43.88 29.54 68.60 2.03 45.90 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 27 C 0.08 3.13 6.93 41.41 0.29 3.41 16 28 C -0.08 -2.67 9.72 71.24 0.69 -1.98 16 29 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.10 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.12 -0.01 8.14 -2.39 -0.02 -0.03 16 33 H 0.10 0.16 7.72 -2.39 -0.02 0.14 16 34 H 0.22 0.99 8.06 -2.91 -0.02 0.97 16 35 H 0.18 3.08 8.06 -2.91 -0.02 3.05 16 36 H 0.43 3.72 8.11 -92.71 -0.75 2.97 16 37 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.06 1.81 7.73 -2.39 -0.02 1.79 16 40 H 0.07 1.93 7.20 -2.39 -0.02 1.91 16 41 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.09 2.00 7.25 -2.39 -0.02 1.98 16 44 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.05 2.51 7.05 -2.39 -0.02 2.49 16 46 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 47 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 48 H 0.06 2.15 7.08 -2.39 -0.02 2.13 16 49 H 0.11 2.57 7.77 -2.38 -0.02 2.55 16 Total: -1.00 -85.18 413.10 5.22 -79.96 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.21 Total: 14.02 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 9.57 Total: 2.89 kcal Atomic # 7 Polarization: -118.53 SS G_CDS: -6.54 Total: -125.07 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.04 Total: -17.70 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -85.18 5.22 -79.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363017210.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.617 kcal (2) G-P(sol) polarization free energy of solvation -85.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds