Wall clock time and date at job start Wed Apr 1 2020 03:17:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53003 * 109.47339 * 2 1
4 4 N 1.46501 * 109.47139 * 180.35065 * 3 2 1
5 5 C 1.37550 * 127.16343 * 84.87761 * 4 3 2
6 6 C 1.47853 * 126.47010 * 359.93775 * 5 4 3
7 7 C 1.39995 * 120.55894 * 162.91975 * 6 5 4
8 8 C 1.38356 * 118.29192 * 179.97438 * 7 6 5
9 9 C 1.38351 * 119.30629 * 359.97438 * 8 7 6
10 10 N 1.31907 * 121.08088 * 0.02562 * 9 8 7
11 11 C 1.31715 * 121.87456 * 359.69823 * 10 9 8
12 12 N 1.31258 * 107.05835 * 179.97438 * 5 4 3
13 13 N 1.28511 * 109.93282 * 0.02562 * 12 5 4
14 14 C 1.31379 * 110.08030 * 359.75083 * 13 12 5
15 15 N 1.38409 * 126.36832 * 180.26372 * 14 13 12
16 16 C 1.46903 * 110.99585 * 242.71185 * 15 14 13
17 17 C 1.50702 * 109.47107 * 57.23144 * 16 15 14
18 18 H 1.07998 * 119.99921 * 358.73769 * 17 16 15
19 19 C 1.37882 * 119.99515 * 178.73273 * 17 16 15
20 20 N 1.31519 * 119.99623 * 179.97438 * 19 17 16
21 21 Si 1.86793 * 120.00291 * 0.02562 * 19 17 16
22 22 H 1.48499 * 109.47132 * 89.99631 * 21 19 17
23 23 H 1.48500 * 109.47070 * 209.99683 * 21 19 17
24 24 H 1.48499 * 109.47086 * 329.99755 * 21 19 17
25 25 C 1.46897 * 111.00127 * 6.66656 * 15 14 13
26 26 C 1.53001 * 109.46884 * 160.77578 * 25 15 14
27 27 O 1.42899 * 109.47289 * 67.17316 * 26 25 15
28 28 C 1.42902 * 114.00016 * 180.02562 * 27 26 25
29 29 H 1.08996 * 109.47394 * 179.97438 * 1 2 3
30 30 H 1.09006 * 109.46848 * 299.99765 * 1 2 3
31 31 H 1.09000 * 109.47206 * 59.99408 * 1 2 3
32 32 H 1.09000 * 109.47206 * 120.00592 * 2 1 3
33 33 H 1.09001 * 109.47209 * 239.99954 * 2 1 3
34 34 H 1.09000 * 109.47165 * 300.35292 * 3 2 1
35 35 H 1.08998 * 109.46530 * 60.35548 * 3 2 1
36 36 H 1.08005 * 120.85530 * 0.02562 * 7 6 5
37 37 H 1.08007 * 120.34936 * 180.02562 * 8 7 6
38 38 H 1.08004 * 119.46019 * 179.97438 * 9 8 7
39 39 H 1.07999 * 119.71971 * 180.31809 * 11 10 9
40 40 H 1.09005 * 109.46622 * 177.23147 * 16 15 14
41 41 H 1.09004 * 109.47239 * 297.22848 * 16 15 14
42 42 H 0.96999 * 119.99757 * 180.02562 * 20 19 17
43 43 H 1.09004 * 109.47012 * 280.77244 * 25 15 14
44 44 H 1.08999 * 109.47335 * 40.77506 * 25 15 14
45 45 H 1.09001 * 109.46845 * 187.17133 * 26 25 15
46 46 H 1.08995 * 109.47264 * 307.17063 * 26 25 15
47 47 H 1.09007 * 109.46650 * 299.99247 * 28 27 26
48 48 H 1.08994 * 109.47229 * 59.99171 * 28 27 26
49 49 H 1.08995 * 109.47205 * 179.97438 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 7 3.5051 1.4425 -0.0085
5 6 4.3297 1.3468 -1.1052
6 6 3.9049 1.2217 -2.5159
7 6 4.8037 1.4866 -3.5560
8 6 4.3566 1.3544 -4.8586
9 6 3.0484 0.9679 -5.0897
10 7 2.2234 0.7248 -4.0895
11 6 2.6033 0.8315 -2.8329
12 7 5.5648 1.3867 -0.6629
13 7 5.5684 1.4986 0.6173
14 6 4.3357 1.5423 1.0697
15 7 3.9512 1.6646 2.3937
16 6 3.1987 0.4824 2.8345
17 6 4.0381 -0.7524 2.6299
18 1 5.0232 -0.6697 2.1951
19 6 3.5483 -1.9876 2.9979
20 7 4.2806 -3.0653 2.8189
21 14 1.8442 -2.1306 3.7494
22 1 0.8430 -2.3311 2.6712
23 1 1.8088 -3.2880 4.6792
24 1 1.5262 -0.8865 4.4953
25 6 5.1137 1.9019 3.2598
26 6 4.6460 2.4971 4.5894
27 8 3.8879 1.5216 5.3076
28 6 3.4007 1.9788 6.5708
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3633 0.5138 0.8901
31 1 -0.3633 0.5139 -0.8899
32 1 1.8933 -0.5139 0.8899
33 1 1.8934 -0.5138 -0.8900
34 1 1.6716 1.9582 -0.8868
35 1 1.6819 1.9544 0.8932
36 1 5.8202 1.7857 -3.3470
37 1 5.0220 1.5501 -5.6865
38 1 2.6966 0.8643 -6.1056
39 1 1.9002 0.6191 -2.0411
40 1 2.9513 0.5826 3.8914
41 1 2.2807 0.3982 2.2528
42 1 3.9360 -3.9343 3.0774
43 1 5.6275 0.9585 3.4447
44 1 5.7956 2.5972 2.7703
45 1 5.5131 2.7910 5.1809
46 1 4.0239 3.3713 4.3973
47 1 4.2418 2.2622 7.2036
48 1 2.7528 2.8421 6.4194
49 1 2.8357 1.1809 7.0527
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001401488931.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:17:41
Heat of formation + Delta-G solvation = 72.993435 kcal
Electronic energy + Delta-G solvation = -32068.828409 eV
Core-core repulsion = 28032.751091 eV
Total energy + Delta-G solvation = -4036.077318 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-43.94088 -40.99837 -39.56219 -37.93928 -37.31319 -34.67620 -34.12602 -33.53044
-32.74441 -31.19042 -30.46957 -28.57266 -27.70764 -26.97122 -25.35899 -24.65702
-24.14956 -23.51256 -23.07485 -21.64311 -21.16890 -19.31892 -18.61525 -18.28382
-17.66004 -17.42108 -17.16774 -17.05359 -16.87695 -16.42312 -16.06310 -15.96762
-15.61135 -15.31640 -14.91600 -14.70864 -14.51630 -14.39957 -14.11598 -13.96220
-13.56073 -13.45455 -13.35675 -13.09086 -12.84557 -12.73243 -12.65854 -12.46737
-12.41307 -12.37978 -12.09491 -11.95722 -11.77670 -11.58520 -11.54374 -11.34424
-11.02123 -10.79969 -10.66231 -10.52053 -10.40228 -10.05323 -8.98342 -8.29968
-6.34581 -0.35696 0.20086 0.99590 1.29725 1.30726 1.35502 1.45852
1.87635 2.32272 2.78902 2.89566 2.97759 3.07595 3.11378 3.47364
3.48647 3.74534 3.79162 3.84774 3.98912 4.03101 4.08811 4.14707
4.27215 4.29863 4.39363 4.43702 4.48361 4.55888 4.58445 4.63957
4.66050 4.70752 4.77002 4.86277 4.90679 4.98122 5.06628 5.07985
5.09946 5.18317 5.20321 5.24699 5.33683 5.47172 5.57136 5.65791
5.82650 6.19991 6.30968 6.44012 6.70803 6.86641 7.28392 7.72644
8.87282
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.011912 B = 0.004211 C = 0.003683
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2349.936852 B = 6647.613892 C = 7600.893960
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.161 4.161
3 C 0.103 3.897
4 N -0.469 5.469
5 C 0.199 3.801
6 C -0.074 4.074
7 C -0.049 4.049
8 C -0.153 4.153
9 C 0.102 3.898
10 N -0.493 5.493
11 C 0.087 3.913
12 N -0.301 5.301
13 N -0.367 5.367
14 C 0.405 3.595
15 N -0.440 5.440
16 C 0.153 3.847
17 C -0.534 4.534
18 H 0.023 0.977
19 C 0.019 3.981
20 N -0.949 5.949
21 Si 0.932 3.068
22 H -0.257 1.257
23 H -0.290 1.290
24 H -0.233 1.233
25 C 0.073 3.927
26 C 0.077 3.923
27 O -0.407 6.407
28 C 0.024 3.976
29 H 0.059 0.941
30 H 0.071 0.929
31 H 0.084 0.916
32 H 0.060 0.940
33 H 0.062 0.938
34 H 0.120 0.880
35 H 0.113 0.887
36 H 0.145 0.855
37 H 0.181 0.819
38 H 0.198 0.802
39 H 0.170 0.830
40 H 0.085 0.915
41 H 0.043 0.957
42 H 0.263 0.737
43 H 0.035 0.965
44 H 0.093 0.907
45 H 0.078 0.922
46 H 0.072 0.928
47 H 0.053 0.947
48 H 0.055 0.945
49 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.147 14.064 -7.931 18.557
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.199 4.199
3 C -0.018 4.018
4 N -0.162 5.162
5 C -0.067 4.067
6 C -0.079 4.079
7 C -0.077 4.077
8 C -0.172 4.172
9 C -0.055 4.055
10 N -0.201 5.201
11 C -0.071 4.071
12 N -0.142 5.142
13 N -0.212 5.212
14 C 0.048 3.952
15 N -0.163 5.163
16 C 0.028 3.972
17 C -0.573 4.573
18 H 0.041 0.959
19 C -0.179 4.179
20 N -0.590 5.590
21 Si 0.754 3.246
22 H -0.182 1.182
23 H -0.217 1.217
24 H -0.156 1.156
25 C -0.055 4.055
26 C 0.001 3.999
27 O -0.327 6.327
28 C -0.072 4.072
29 H 0.079 0.921
30 H 0.090 0.910
31 H 0.103 0.897
32 H 0.078 0.922
33 H 0.081 0.919
34 H 0.138 0.862
35 H 0.132 0.868
36 H 0.163 0.837
37 H 0.199 0.801
38 H 0.215 0.785
39 H 0.187 0.813
40 H 0.103 0.897
41 H 0.061 0.939
42 H 0.072 0.928
43 H 0.053 0.947
44 H 0.111 0.889
45 H 0.096 0.904
46 H 0.091 0.909
47 H 0.071 0.929
48 H 0.074 0.926
49 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -8.861 13.889 -8.024 18.325
hybrid contribution 0.211 -1.174 1.017 1.567
sum -8.650 12.715 -7.006 16.900
Atomic orbital electron populations
1.21695 0.91268 1.03118 1.03888 1.22253 0.99371 0.95319 1.02936
1.22387 0.73719 0.99135 1.06556 1.46208 1.09147 1.55936 1.04954
1.22656 0.86861 1.07731 0.89488 1.18616 0.96871 1.05358 0.87047
1.21858 0.99684 0.94035 0.92113 1.22508 0.98072 0.99698 0.96906
1.23638 0.90113 0.92193 0.99583 1.67795 1.37973 1.14809 0.99562
1.23574 0.93361 0.94941 0.95269 1.74016 1.17962 1.18434 1.03744
1.74490 1.17582 1.25757 1.03356 1.22718 0.85817 0.97471 0.89161
1.59310 1.23654 1.38114 0.95208 1.20781 0.92975 0.83940 0.99475
1.21650 1.02243 0.92513 1.40889 0.95882 1.25776 1.01755 0.94986
0.95400 1.70114 1.39853 0.99261 1.49725 0.85954 0.79815 0.79252
0.79568 1.18161 1.21669 1.15564 1.22042 0.90428 1.00933 0.92058
1.22529 0.95832 0.91105 0.90455 1.88070 1.71622 1.40215 1.32806
1.22886 0.98926 1.00658 0.84744 0.92143 0.91001 0.89686 0.92190
0.91928 0.86185 0.86848 0.83743 0.80125 0.78506 0.81309 0.89723
0.93883 0.92808 0.94652 0.88877 0.90450 0.90940 0.92878 0.92595
0.90023
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.20 9.91 71.98 0.71 -2.48 16
2 C -0.16 -5.03 5.10 30.60 0.16 -4.87 16
3 C 0.10 3.02 4.39 86.38 0.38 3.40 16
4 N -0.47 -18.06 2.83 -516.75 -1.46 -19.52 16
5 C 0.20 7.83 7.73 136.22 1.05 8.89 16
6 C -0.07 -2.32 5.89 -19.99 -0.12 -2.44 16
7 C -0.05 -1.25 9.84 22.72 0.22 -1.03 16
8 C -0.15 -2.65 10.10 22.32 0.23 -2.42 16
9 C 0.10 1.83 11.17 84.71 0.95 2.78 16
10 N -0.49 -12.18 10.35 -194.75 -2.01 -14.19 16
11 C 0.09 2.43 9.60 85.02 0.82 3.25 16
12 N -0.30 -13.83 12.06 -50.81 -0.61 -14.44 16
13 N -0.37 -17.89 11.02 -58.02 -0.64 -18.53 16
14 C 0.41 17.95 5.73 260.12 1.49 19.44 16
15 N -0.44 -18.31 4.65 -710.36 -3.30 -21.61 16
16 C 0.15 6.97 3.73 85.56 0.32 7.29 16
17 C -0.53 -30.48 7.73 25.60 0.20 -30.28 16
18 H 0.02 1.56 7.03 -2.91 -0.02 1.54 16
19 C 0.02 1.08 5.47 84.66 0.46 1.54 16
20 N -0.95 -60.75 13.96 21.45 0.30 -60.45 16
21 Si 0.93 42.63 27.42 68.60 1.88 44.51 16
22 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16
23 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16
24 H -0.23 -9.63 6.51 99.48 0.65 -8.98 16
25 C 0.07 2.89 4.96 86.30 0.43 3.32 16
26 C 0.08 2.36 6.24 71.98 0.45 2.81 16
27 O -0.41 -14.19 7.78 -148.98 -1.16 -15.35 16
28 C 0.02 0.58 11.01 113.37 1.25 1.83 16
29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16
30 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16
31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16
32 H 0.06 2.43 5.50 -2.39 -0.01 2.41 16
33 H 0.06 2.06 6.13 -2.39 -0.01 2.05 16
34 H 0.12 2.74 6.42 -2.39 -0.02 2.73 16
35 H 0.11 3.07 7.65 -2.39 -0.02 3.06 16
36 H 0.14 3.65 8.03 -2.91 -0.02 3.63 16
37 H 0.18 1.64 8.06 -2.91 -0.02 1.61 16
38 H 0.20 1.88 8.06 -2.91 -0.02 1.85 16
39 H 0.17 4.56 2.80 -2.91 -0.01 4.56 16
40 H 0.09 3.86 4.13 -2.38 -0.01 3.85 16
41 H 0.04 1.85 3.50 -2.38 -0.01 1.84 16
42 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16
43 H 0.03 1.72 6.67 -2.38 -0.02 1.70 16
44 H 0.09 3.52 7.47 -2.39 -0.02 3.50 16
45 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16
46 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16
47 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16
48 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16
49 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16
Total: -1.00 -81.93 384.27 2.91 -79.02
By element:
Atomic # 1 Polarization: 28.61 SS G_CDS: 0.92 Total: 29.53 kcal
Atomic # 6 Polarization: 2.03 SS G_CDS: 8.99 Total: 11.02 kcal
Atomic # 7 Polarization: -141.00 SS G_CDS: -7.73 Total: -148.73 kcal
Atomic # 8 Polarization: -14.19 SS G_CDS: -1.16 Total: -15.35 kcal
Atomic # 14 Polarization: 42.63 SS G_CDS: 1.88 Total: 44.51 kcal
Total: -81.93 2.91 -79.02 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001401488931.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 152.013 kcal
(2) G-P(sol) polarization free energy of solvation -81.926 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.087 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.020 kcal
(6) G-S(sol) free energy of system = (1) + (5) 72.993 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds