Wall clock time and date at job start Wed Apr 1 2020 04:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99634 * 2 1 4 4 H 1.08993 * 109.47604 * 30.00228 * 3 2 1 5 5 C 1.53009 * 109.46860 * 270.00004 * 3 2 1 6 6 C 1.53001 * 109.47125 * 150.00409 * 3 2 1 7 7 N 1.46497 * 109.46786 * 296.30475 * 6 3 2 8 8 C 1.37615 * 127.15957 * 90.68422 * 7 6 3 9 9 C 1.47777 * 126.46970 * 359.95063 * 8 7 6 10 10 C 1.39581 * 119.75373 * 180.02562 * 9 8 7 11 11 C 1.38317 * 119.05185 * 179.97438 * 10 9 8 12 12 C 1.38852 * 118.53316 * 0.02562 * 11 10 9 13 13 C 1.38250 * 119.40976 * 359.97438 * 12 11 10 14 14 N 1.31743 * 120.92202 * 359.74695 * 13 12 11 15 15 N 1.31280 * 107.06314 * 179.97438 * 8 7 6 16 16 N 1.28521 * 109.91114 * 359.74769 * 15 8 7 17 17 C 1.31482 * 110.06741 * 0.41429 * 16 15 8 18 18 N 1.38293 * 126.36496 * 179.85582 * 17 16 15 19 19 C 1.46900 * 110.99980 * 106.09999 * 18 17 16 20 20 C 1.46904 * 110.99941 * 342.14743 * 18 17 16 21 21 H 1.09001 * 109.46929 * 60.00273 * 20 18 17 22 22 C 1.53001 * 109.47162 * 299.99868 * 20 18 17 23 23 C 1.50705 * 109.46947 * 179.97438 * 20 18 17 24 24 H 1.08001 * 120.00108 * 0.02562 * 23 20 18 25 25 C 1.37877 * 119.99788 * 179.97438 * 23 20 18 26 26 N 1.31517 * 119.99817 * 0.02562 * 25 23 20 27 27 Si 1.86800 * 119.99733 * 180.02562 * 25 23 20 28 28 H 1.48500 * 109.47269 * 60.00444 * 27 25 23 29 29 H 1.48509 * 109.46914 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.47228 * 300.00080 * 27 25 23 31 31 H 1.09005 * 109.46926 * 299.99783 * 1 2 3 32 32 H 1.08995 * 109.47148 * 59.99753 * 1 2 3 33 33 H 1.09001 * 109.46810 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46464 * 180.02562 * 5 3 2 35 35 H 1.08997 * 109.47483 * 300.00079 * 5 3 2 36 36 H 1.08999 * 109.47088 * 60.00158 * 5 3 2 37 37 H 1.09000 * 109.46977 * 176.29996 * 6 3 2 38 38 H 1.09004 * 109.47291 * 56.30156 * 6 3 2 39 39 H 1.07999 * 120.47336 * 0.02562 * 10 9 8 40 40 H 1.08002 * 120.73149 * 180.02562 * 11 10 9 41 41 H 1.08002 * 120.29221 * 180.02562 * 12 11 10 42 42 H 1.08005 * 119.53876 * 180.02562 * 13 12 11 43 43 H 1.09002 * 109.46717 * 54.47911 * 19 18 17 44 44 H 1.09001 * 109.47063 * 174.47458 * 19 18 17 45 45 H 1.08992 * 109.47069 * 294.47629 * 19 18 17 46 46 H 1.09001 * 109.47008 * 300.00101 * 22 20 18 47 47 H 1.08996 * 109.47129 * 60.00099 * 22 20 18 48 48 H 1.08998 * 109.47159 * 179.97438 * 22 20 18 49 49 H 0.97004 * 119.99573 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2176 1.7714 -1.4426 6 6 3.3589 1.2634 0.7212 7 7 3.1505 0.9026 2.1256 8 6 3.1495 -0.3623 2.6676 9 6 3.3593 -1.6305 1.9385 10 6 3.3288 -2.8414 2.6321 11 6 3.5264 -4.0197 1.9351 12 6 3.7489 -3.9514 0.5663 13 6 3.7663 -2.7179 -0.0579 14 7 3.5700 -1.6098 0.6270 15 7 2.9265 -0.2298 3.9545 16 7 2.7953 1.0140 4.2502 17 6 2.9179 1.7504 3.1679 18 7 2.8327 3.1290 3.1001 19 6 4.1595 3.7297 2.9079 20 6 2.1757 3.6752 4.2951 21 1 2.7494 3.4037 5.1813 22 6 0.7618 3.1013 4.4071 23 6 2.1017 5.1765 4.1858 24 1 2.5023 5.6749 3.3155 25 6 1.5217 5.9135 5.1964 26 7 1.0334 5.3065 6.2560 27 14 1.4294 7.7743 5.0605 28 1 0.6482 8.1443 3.8530 29 1 0.7653 8.3265 6.2686 30 1 2.8016 8.3314 4.9523 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 2.6613 2.7670 -1.4425 35 1 2.8828 1.0776 -1.9565 36 1 1.2567 1.8014 -1.9564 37 1 3.8322 2.2436 0.6641 38 1 4.0015 0.5215 0.2470 39 1 3.1526 -2.8581 3.6975 40 1 3.5079 -4.9719 2.4445 41 1 3.9062 -4.8538 -0.0058 42 1 3.9388 -2.6623 -1.1226 43 1 4.6350 3.2875 2.0325 44 1 4.0537 4.8044 2.7600 45 1 4.7739 3.5429 3.7885 46 1 0.1882 3.3728 3.5209 47 1 0.8157 2.0155 4.4864 48 1 0.2745 3.5062 5.2940 49 1 0.6257 5.8251 6.9672 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001401526295.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:11 Heat of formation + Delta-G solvation = 97.359077 kcal Electronic energy + Delta-G solvation = -32036.157075 eV Core-core repulsion = 28001.136331 eV Total energy + Delta-G solvation = -4035.020744 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.43784 -39.92552 -38.26559 -37.11159 -34.77084 -32.98747 -32.51028 -32.06267 -31.44918 -29.26611 -28.78936 -27.03935 -26.36077 -25.49799 -24.42229 -23.92822 -23.41661 -21.82379 -21.57813 -20.60851 -19.40298 -17.36899 -16.75174 -16.67818 -16.27716 -16.11744 -15.87073 -15.63605 -15.19381 -14.99332 -14.58472 -14.48822 -14.00677 -13.98701 -13.54883 -13.35210 -13.22635 -12.97361 -12.72835 -12.61074 -12.33009 -12.21526 -11.95096 -11.78347 -11.55004 -11.13523 -11.02563 -10.95972 -10.83920 -10.70379 -10.43811 -10.24467 -10.09854 -10.03608 -9.98391 -9.85075 -9.70207 -9.43429 -9.35149 -9.06310 -8.54123 -8.33851 -7.39748 -6.05248 -4.13043 0.73959 1.23629 2.36406 2.66275 3.28474 3.29227 3.34117 3.35284 3.76183 3.90989 3.99530 4.31423 4.58337 4.62665 4.74191 4.82161 4.95658 5.00648 5.09223 5.12413 5.21632 5.27198 5.32066 5.34849 5.45125 5.52944 5.61390 5.63769 5.70055 5.73728 5.75335 5.87891 6.00642 6.06809 6.08375 6.11074 6.22426 6.39076 6.47810 6.58342 6.84613 6.95427 7.13099 7.22013 7.26673 7.42545 7.68337 7.72584 7.88879 7.95035 8.23508 8.43550 8.88358 9.26029 9.51561 11.01091 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.016201 B = 0.003394 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.837141 B = 8248.151022 C = 9020.936677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.362 6.362 3 C 0.077 3.923 4 H 0.070 0.930 5 C -0.166 4.166 6 C 0.117 3.883 7 N -0.459 5.459 8 C 0.196 3.804 9 C 0.224 3.776 10 C -0.136 4.136 11 C -0.076 4.076 12 C -0.178 4.178 13 C 0.106 3.894 14 N -0.456 5.456 15 N -0.263 5.263 16 N -0.310 5.310 17 C 0.389 3.611 18 N -0.461 5.461 19 C 0.041 3.959 20 C 0.230 3.770 21 H 0.026 0.974 22 C -0.134 4.134 23 C -0.518 4.518 24 H 0.064 0.936 25 C 0.065 3.935 26 N -0.883 5.883 27 Si 0.900 3.100 28 H -0.277 1.277 29 H -0.287 1.287 30 H -0.277 1.277 31 H 0.039 0.961 32 H 0.037 0.963 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.117 0.883 39 H 0.145 0.855 40 H 0.136 0.864 41 H 0.132 0.868 42 H 0.155 0.845 43 H 0.045 0.955 44 H 0.095 0.905 45 H 0.033 0.967 46 H 0.024 0.976 47 H 0.023 0.977 48 H 0.089 0.911 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.800 -14.953 -15.919 22.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.018 3.982 4 H 0.088 0.912 5 C -0.225 4.225 6 C -0.006 4.006 7 N -0.152 5.152 8 C -0.068 4.068 9 C 0.085 3.915 10 C -0.158 4.158 11 C -0.101 4.101 12 C -0.198 4.198 13 C -0.053 4.053 14 N -0.167 5.167 15 N -0.107 5.107 16 N -0.156 5.156 17 C 0.034 3.966 18 N -0.186 5.186 19 C -0.106 4.106 20 C 0.126 3.874 21 H 0.044 0.956 22 C -0.192 4.192 23 C -0.556 4.556 24 H 0.082 0.918 25 C -0.138 4.138 26 N -0.521 5.521 27 Si 0.727 3.273 28 H -0.202 1.202 29 H -0.212 1.212 30 H -0.202 1.202 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.118 0.882 38 H 0.135 0.865 39 H 0.163 0.837 40 H 0.154 0.846 41 H 0.150 0.850 42 H 0.172 0.828 43 H 0.063 0.937 44 H 0.114 0.886 45 H 0.052 0.948 46 H 0.043 0.957 47 H 0.042 0.958 48 H 0.108 0.892 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.328 -14.418 -15.120 21.336 hybrid contribution 0.049 0.665 -0.457 0.808 sum 4.377 -13.753 -15.576 21.235 Atomic orbital electron populations 1.22721 0.81969 1.02055 0.99755 1.88048 1.18586 1.26457 1.94938 1.22364 0.94539 0.85812 0.95533 0.91202 1.22161 1.02598 1.01687 0.96012 1.22158 0.97969 1.03267 0.77180 1.46093 1.54421 1.05813 1.08908 1.21886 1.09890 0.84074 0.90984 1.18056 0.96084 0.88547 0.88774 1.22014 1.00023 0.91555 1.02193 1.21488 0.96073 0.98379 0.94203 1.22169 1.02582 0.99488 0.95585 1.22597 0.95385 0.87391 0.99915 1.67582 1.10841 1.31695 1.06549 1.74265 1.15440 1.12068 1.08912 1.74907 1.23121 0.96371 1.21184 1.23070 0.98296 0.92012 0.83177 1.59116 1.19606 0.94894 1.45025 1.22325 0.87269 1.01856 0.99133 1.19355 0.91439 0.93646 0.82980 0.95628 1.21827 0.98213 0.97187 1.01956 1.21017 1.39800 0.89855 1.04937 0.91777 1.24896 0.95096 0.98713 0.95117 1.69913 1.38636 1.35476 1.08088 0.86542 0.78268 0.85005 0.77452 1.20231 1.21241 1.20231 0.94239 0.94417 0.90277 0.91331 0.91553 0.92150 0.88187 0.86510 0.83685 0.84605 0.84987 0.82784 0.93673 0.88613 0.94784 0.95711 0.95808 0.89215 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.82 101.05 1.09 1.50 16 2 O -0.36 -5.13 8.59 -35.23 -0.30 -5.43 16 3 C 0.08 1.03 2.97 -26.73 -0.08 0.96 16 4 H 0.07 1.11 7.79 -51.93 -0.40 0.71 16 5 C -0.17 -1.71 9.53 37.16 0.35 -1.35 16 6 C 0.12 1.67 5.28 -4.04 -0.02 1.65 16 7 N -0.46 -8.26 2.76 -114.73 -0.32 -8.57 16 8 C 0.20 3.59 7.71 -153.74 -1.18 2.41 16 9 C 0.22 3.36 6.67 -83.02 -0.55 2.80 16 10 C -0.14 -1.73 9.74 -39.05 -0.38 -2.11 16 11 C -0.08 -0.71 10.16 -39.32 -0.40 -1.11 16 12 C -0.18 -1.49 10.11 -39.35 -0.40 -1.89 16 13 C 0.11 1.05 11.17 -17.58 -0.20 0.85 16 14 N -0.46 -6.00 6.35 -9.85 -0.06 -6.06 16 15 N -0.26 -5.56 11.86 32.59 0.39 -5.18 16 16 N -0.31 -7.24 9.82 30.28 0.30 -6.94 16 17 C 0.39 8.28 6.10 -319.10 -1.95 6.34 16 18 N -0.46 -10.01 4.65 -176.13 -0.82 -10.83 16 19 C 0.04 0.77 9.03 60.06 0.54 1.32 16 20 C 0.23 5.89 1.72 -68.86 -0.12 5.77 16 21 H 0.03 0.75 7.93 -51.93 -0.41 0.34 16 22 C -0.13 -3.48 8.79 37.16 0.33 -3.15 16 23 C -0.52 -13.72 7.95 -34.44 -0.27 -13.99 16 24 H 0.06 1.63 6.39 -52.49 -0.34 1.30 16 25 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 26 N -0.88 -25.13 11.32 55.43 0.63 -24.50 16 27 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 29 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 30 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 31 H 0.04 0.56 8.09 -51.93 -0.42 0.14 16 32 H 0.04 0.41 7.87 -51.93 -0.41 0.00 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.59 7.87 -51.93 -0.41 0.18 16 37 H 0.10 1.32 6.22 -51.93 -0.32 0.99 16 38 H 0.12 1.56 6.25 -51.93 -0.32 1.23 16 39 H 0.15 1.85 7.86 -52.49 -0.41 1.44 16 40 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 41 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.15 1.09 8.06 -52.48 -0.42 0.67 16 43 H 0.04 0.69 6.24 -51.93 -0.32 0.37 16 44 H 0.10 1.78 6.29 -51.93 -0.33 1.45 16 45 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.02 0.60 6.12 -51.93 -0.32 0.29 16 48 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 49 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 393.41 15.07 5.93 5.93 Total: -1.00 -32.15 393.41 -9.86 -42.01 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.25 Total: 2.20 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -3.33 Total: 1.64 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: 0.11 Total: -62.08 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.30 Total: -5.43 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.15 -9.86 -42.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401526295.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.367 kcal (2) G-P(sol) polarization free energy of solvation -32.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds