Wall clock time and date at job start Wed Apr 1 2020 04:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99634 * 2 1 4 4 H 1.08993 * 109.47604 * 30.00228 * 3 2 1 5 5 C 1.53009 * 109.46860 * 270.00004 * 3 2 1 6 6 C 1.53001 * 109.47125 * 150.00409 * 3 2 1 7 7 N 1.46497 * 109.46786 * 296.30475 * 6 3 2 8 8 C 1.37615 * 127.15957 * 90.68422 * 7 6 3 9 9 C 1.47777 * 126.46970 * 359.95063 * 8 7 6 10 10 C 1.39581 * 119.75373 * 180.02562 * 9 8 7 11 11 C 1.38317 * 119.05185 * 179.97438 * 10 9 8 12 12 C 1.38852 * 118.53316 * 0.02562 * 11 10 9 13 13 C 1.38250 * 119.40976 * 359.97438 * 12 11 10 14 14 N 1.31743 * 120.92202 * 359.74695 * 13 12 11 15 15 N 1.31280 * 107.06314 * 179.97438 * 8 7 6 16 16 N 1.28521 * 109.91114 * 359.74769 * 15 8 7 17 17 C 1.31482 * 110.06741 * 0.41429 * 16 15 8 18 18 N 1.38293 * 126.36496 * 179.85582 * 17 16 15 19 19 C 1.46900 * 110.99980 * 106.09999 * 18 17 16 20 20 C 1.46904 * 110.99941 * 342.14743 * 18 17 16 21 21 H 1.09001 * 109.46929 * 60.00273 * 20 18 17 22 22 C 1.53001 * 109.47162 * 299.99868 * 20 18 17 23 23 C 1.50705 * 109.46947 * 179.97438 * 20 18 17 24 24 H 1.08001 * 120.00108 * 0.02562 * 23 20 18 25 25 C 1.37877 * 119.99788 * 179.97438 * 23 20 18 26 26 N 1.31517 * 119.99817 * 0.02562 * 25 23 20 27 27 Si 1.86800 * 119.99733 * 180.02562 * 25 23 20 28 28 H 1.48500 * 109.47269 * 60.00444 * 27 25 23 29 29 H 1.48509 * 109.46914 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.47228 * 300.00080 * 27 25 23 31 31 H 1.09005 * 109.46926 * 299.99783 * 1 2 3 32 32 H 1.08995 * 109.47148 * 59.99753 * 1 2 3 33 33 H 1.09001 * 109.46810 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46464 * 180.02562 * 5 3 2 35 35 H 1.08997 * 109.47483 * 300.00079 * 5 3 2 36 36 H 1.08999 * 109.47088 * 60.00158 * 5 3 2 37 37 H 1.09000 * 109.46977 * 176.29996 * 6 3 2 38 38 H 1.09004 * 109.47291 * 56.30156 * 6 3 2 39 39 H 1.07999 * 120.47336 * 0.02562 * 10 9 8 40 40 H 1.08002 * 120.73149 * 180.02562 * 11 10 9 41 41 H 1.08002 * 120.29221 * 180.02562 * 12 11 10 42 42 H 1.08005 * 119.53876 * 180.02562 * 13 12 11 43 43 H 1.09002 * 109.46717 * 54.47911 * 19 18 17 44 44 H 1.09001 * 109.47063 * 174.47458 * 19 18 17 45 45 H 1.08992 * 109.47069 * 294.47629 * 19 18 17 46 46 H 1.09001 * 109.47008 * 300.00101 * 22 20 18 47 47 H 1.08996 * 109.47129 * 60.00099 * 22 20 18 48 48 H 1.08998 * 109.47159 * 179.97438 * 22 20 18 49 49 H 0.97004 * 119.99573 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2176 1.7714 -1.4426 6 6 3.3589 1.2634 0.7212 7 7 3.1505 0.9026 2.1256 8 6 3.1495 -0.3623 2.6676 9 6 3.3593 -1.6305 1.9385 10 6 3.3288 -2.8414 2.6321 11 6 3.5264 -4.0197 1.9351 12 6 3.7489 -3.9514 0.5663 13 6 3.7663 -2.7179 -0.0579 14 7 3.5700 -1.6098 0.6270 15 7 2.9265 -0.2298 3.9545 16 7 2.7953 1.0140 4.2502 17 6 2.9179 1.7504 3.1679 18 7 2.8327 3.1290 3.1001 19 6 4.1595 3.7297 2.9079 20 6 2.1757 3.6752 4.2951 21 1 2.7494 3.4037 5.1813 22 6 0.7618 3.1013 4.4071 23 6 2.1017 5.1765 4.1858 24 1 2.5023 5.6749 3.3155 25 6 1.5217 5.9135 5.1964 26 7 1.0334 5.3065 6.2560 27 14 1.4294 7.7743 5.0605 28 1 0.6482 8.1443 3.8530 29 1 0.7653 8.3265 6.2686 30 1 2.8016 8.3314 4.9523 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 2.6613 2.7670 -1.4425 35 1 2.8828 1.0776 -1.9565 36 1 1.2567 1.8014 -1.9564 37 1 3.8322 2.2436 0.6641 38 1 4.0015 0.5215 0.2470 39 1 3.1526 -2.8581 3.6975 40 1 3.5079 -4.9719 2.4445 41 1 3.9062 -4.8538 -0.0058 42 1 3.9388 -2.6623 -1.1226 43 1 4.6350 3.2875 2.0325 44 1 4.0537 4.8044 2.7600 45 1 4.7739 3.5429 3.7885 46 1 0.1882 3.3728 3.5209 47 1 0.8157 2.0155 4.4864 48 1 0.2745 3.5062 5.2940 49 1 0.6257 5.8251 6.9672 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001401526295.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:10 Heat of formation + Delta-G solvation = 79.083512 kcal Electronic energy + Delta-G solvation = -32036.949563 eV Core-core repulsion = 28001.136331 eV Total energy + Delta-G solvation = -4035.813232 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.93728 -40.82144 -39.34731 -38.87598 -36.11393 -34.89803 -33.43525 -33.11334 -32.59489 -31.24391 -30.17746 -28.13480 -27.58272 -27.23979 -26.13425 -25.05601 -24.39812 -23.42470 -22.76667 -21.87696 -21.06449 -18.61357 -18.40289 -17.82159 -17.62997 -17.46629 -17.04169 -16.87476 -16.50148 -16.28760 -16.14607 -15.75334 -15.49792 -15.13563 -14.75155 -14.72325 -14.44297 -14.04180 -13.96943 -13.79736 -13.63697 -13.46381 -13.18116 -12.99262 -12.84400 -12.71222 -12.66284 -12.58661 -12.43994 -12.26353 -12.17622 -12.06555 -11.90521 -11.63753 -11.23960 -11.19051 -10.89992 -10.69986 -10.58347 -10.48176 -10.33954 -9.84409 -9.02084 -8.12934 -6.28600 -0.26493 0.42991 1.01646 1.25316 1.45724 1.47939 1.55584 1.83011 2.41334 2.72042 2.78029 3.00414 3.03413 3.18059 3.64152 3.77461 3.84566 3.98985 4.03481 4.10679 4.16629 4.18287 4.22491 4.36542 4.39520 4.41732 4.49747 4.53232 4.66052 4.69765 4.70603 4.78151 4.83211 4.87144 4.91996 4.94831 4.98395 5.02836 5.12082 5.23336 5.27365 5.31192 5.39710 5.48747 5.63370 5.79338 5.87122 5.96649 6.13453 6.20904 6.54962 6.80915 6.99873 7.40233 7.71390 8.94008 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.016201 B = 0.003394 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.837141 B = 8248.151022 C = 9020.936677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.372 6.372 3 C 0.079 3.921 4 H 0.038 0.962 5 C -0.156 4.156 6 C 0.113 3.887 7 N -0.453 5.453 8 C 0.219 3.781 9 C 0.182 3.818 10 C -0.146 4.146 11 C -0.072 4.072 12 C -0.151 4.151 13 C 0.099 3.901 14 N -0.466 5.466 15 N -0.305 5.305 16 N -0.357 5.357 17 C 0.372 3.628 18 N -0.457 5.457 19 C 0.042 3.958 20 C 0.243 3.757 21 H -0.020 1.020 22 C -0.115 4.115 23 C -0.527 4.527 24 H 0.076 0.924 25 C 0.013 3.987 26 N -0.920 5.920 27 Si 0.971 3.029 28 H -0.268 1.268 29 H -0.288 1.288 30 H -0.265 1.265 31 H 0.010 0.990 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.111 0.889 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.169 0.831 41 H 0.176 0.824 42 H 0.189 0.811 43 H 0.081 0.919 44 H 0.098 0.902 45 H 0.017 0.983 46 H 0.024 0.976 47 H 0.016 0.984 48 H 0.065 0.935 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.911 -16.376 -20.044 26.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.290 6.290 3 C 0.020 3.980 4 H 0.057 0.943 5 C -0.214 4.214 6 C -0.009 4.009 7 N -0.145 5.145 8 C -0.048 4.048 9 C 0.045 3.955 10 C -0.168 4.168 11 C -0.097 4.097 12 C -0.171 4.171 13 C -0.060 4.060 14 N -0.177 5.177 15 N -0.146 5.146 16 N -0.203 5.203 17 C 0.015 3.985 18 N -0.182 5.182 19 C -0.104 4.104 20 C 0.137 3.863 21 H -0.003 1.003 22 C -0.173 4.173 23 C -0.566 4.566 24 H 0.094 0.906 25 C -0.187 4.187 26 N -0.558 5.558 27 Si 0.795 3.205 28 H -0.192 1.192 29 H -0.214 1.214 30 H -0.190 1.190 31 H 0.029 0.971 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.129 0.871 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.186 0.814 41 H 0.193 0.807 42 H 0.205 0.795 43 H 0.100 0.900 44 H 0.117 0.883 45 H 0.035 0.965 46 H 0.043 0.957 47 H 0.035 0.965 48 H 0.084 0.916 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.454 -15.849 -19.264 25.535 hybrid contribution -0.240 0.796 0.683 1.076 sum 5.214 -15.053 -18.581 24.475 Atomic orbital electron populations 1.22759 0.81402 1.02805 0.99372 1.88018 1.19200 1.26734 1.95072 1.22364 0.93250 0.85076 0.97283 0.94340 1.22091 1.03464 1.02482 0.93343 1.22509 0.98949 1.04259 0.75151 1.46257 1.53568 1.05079 1.09627 1.22655 1.06254 0.85412 0.90431 1.17944 1.00154 0.87414 0.89945 1.22076 1.00481 0.92304 1.01929 1.21886 0.94712 0.98238 0.94908 1.22675 0.98748 1.00548 0.95122 1.23276 0.94391 0.87101 1.01276 1.67483 1.11014 1.33650 1.05533 1.74152 1.18349 1.11230 1.10918 1.74754 1.24611 0.97659 1.23237 1.22927 0.99780 0.91813 0.83972 1.59047 1.21014 0.95457 1.42670 1.22406 0.85951 1.02138 0.99934 1.18947 0.90541 0.93800 0.82992 1.00255 1.21592 0.98688 0.96505 1.00564 1.21329 1.39633 0.90238 1.05351 0.90558 1.25813 0.94579 1.03686 0.94608 1.70080 1.39500 1.37335 1.08929 0.85422 0.78730 0.78889 0.77448 1.19250 1.21415 1.18994 0.97097 0.92284 0.88984 0.90260 0.90058 0.91476 0.87067 0.85055 0.85055 0.81362 0.80671 0.79460 0.90018 0.88336 0.96450 0.95735 0.96527 0.91633 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 10.82 113.37 1.23 2.05 16 2 O -0.37 -10.12 8.59 -148.98 -1.28 -11.40 16 3 C 0.08 2.07 2.97 30.60 0.09 2.16 16 4 H 0.04 1.25 7.79 -2.39 -0.02 1.23 16 5 C -0.16 -2.78 9.53 71.99 0.69 -2.09 16 6 C 0.11 3.10 5.28 86.38 0.46 3.56 16 7 N -0.45 -16.71 2.76 -516.90 -1.43 -18.14 16 8 C 0.22 8.33 7.71 136.17 1.05 9.38 16 9 C 0.18 5.40 6.67 41.84 0.28 5.68 16 10 C -0.15 -3.60 9.74 22.61 0.22 -3.38 16 11 C -0.07 -1.10 10.16 22.44 0.23 -0.87 16 12 C -0.15 -1.76 10.11 22.42 0.23 -1.54 16 13 C 0.10 1.53 11.17 84.71 0.95 2.48 16 14 N -0.47 -11.20 6.35 -185.07 -1.17 -12.38 16 15 N -0.30 -13.79 11.86 -50.81 -0.60 -14.39 16 16 N -0.36 -17.99 9.82 -58.11 -0.57 -18.56 16 17 C 0.37 16.66 6.10 260.19 1.59 18.25 16 18 N -0.46 -20.67 4.65 -711.15 -3.30 -23.97 16 19 C 0.04 1.61 9.03 127.69 1.15 2.76 16 20 C 0.24 13.17 1.72 44.17 0.08 13.24 16 21 H -0.02 -1.27 7.93 -2.39 -0.02 -1.29 16 22 C -0.12 -6.40 8.79 71.98 0.63 -5.76 16 23 C -0.53 -28.67 7.95 25.60 0.20 -28.46 16 24 H 0.08 3.88 6.39 -2.91 -0.02 3.86 16 25 C 0.01 0.70 5.30 84.65 0.45 1.15 16 26 N -0.92 -54.50 11.32 21.45 0.24 -54.26 16 27 Si 0.97 42.93 29.54 68.60 2.03 44.96 16 28 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 29 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 30 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 31 H 0.01 0.31 8.09 -2.38 -0.02 0.29 16 32 H 0.06 1.18 7.87 -2.39 -0.02 1.17 16 33 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.07 1.12 7.87 -2.39 -0.02 1.10 16 37 H 0.11 2.76 6.22 -2.39 -0.01 2.74 16 38 H 0.13 3.25 6.25 -2.38 -0.01 3.24 16 39 H 0.13 3.51 7.86 -2.91 -0.02 3.49 16 40 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 41 H 0.18 0.63 8.06 -2.91 -0.02 0.61 16 42 H 0.19 1.61 8.06 -2.91 -0.02 1.58 16 43 H 0.08 2.45 6.24 -2.39 -0.01 2.43 16 44 H 0.10 3.65 6.29 -2.39 -0.02 3.63 16 45 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.02 0.90 6.12 -2.39 -0.01 0.88 16 48 H 0.06 3.93 6.07 -2.39 -0.01 3.92 16 49 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -76.36 393.41 4.38 -71.98 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.96 Total: 17.56 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: 9.51 Total: 18.60 kcal Atomic # 7 Polarization: -134.86 SS G_CDS: -6.84 Total: -141.69 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -1.28 Total: -11.40 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -76.36 4.38 -71.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401526295.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.064 kcal (2) G-P(sol) polarization free energy of solvation -76.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds