Wall clock time and date at job start Wed Apr 1 2020 04:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00148 * 2 1 4 4 H 1.09000 * 109.47061 * 329.99724 * 3 2 1 5 5 C 1.53002 * 109.47437 * 89.99598 * 3 2 1 6 6 C 1.52998 * 109.47163 * 210.00182 * 3 2 1 7 7 N 1.46501 * 109.47420 * 64.99810 * 6 3 2 8 8 C 1.37551 * 127.16321 * 274.44754 * 7 6 3 9 9 C 1.47863 * 126.47021 * 0.02562 * 8 7 6 10 10 C 1.39989 * 120.55725 * 145.65817 * 9 8 7 11 11 C 1.38357 * 118.29212 * 179.97438 * 10 9 8 12 12 C 1.38347 * 119.30462 * 359.97438 * 11 10 9 13 13 N 1.31910 * 121.07990 * 0.02562 * 12 11 10 14 14 C 1.31710 * 121.87506 * 359.71207 * 13 12 11 15 15 N 1.31257 * 107.05675 * 179.86790 * 8 7 6 16 16 N 1.28515 * 109.93575 * 0.40827 * 15 8 7 17 17 C 1.31372 * 110.07685 * 359.73824 * 16 15 8 18 18 N 1.38410 * 126.36917 * 180.02562 * 17 16 15 19 19 C 1.46903 * 111.00017 * 258.05562 * 18 17 16 20 20 C 1.46897 * 111.00060 * 22.01301 * 18 17 16 21 21 H 1.09001 * 109.46521 * 299.99692 * 20 18 17 22 22 C 1.52996 * 109.47081 * 59.99736 * 20 18 17 23 23 C 1.50696 * 109.47044 * 180.02562 * 20 18 17 24 24 H 1.08003 * 119.99953 * 359.97438 * 23 20 18 25 25 C 1.37881 * 120.00186 * 179.97438 * 23 20 18 26 26 N 1.31521 * 119.99616 * 359.97438 * 25 23 20 27 27 Si 1.86792 * 120.00294 * 179.97438 * 25 23 20 28 28 H 1.48501 * 109.47299 * 359.97438 * 27 25 23 29 29 H 1.48508 * 109.47329 * 120.00028 * 27 25 23 30 30 H 1.48505 * 109.47266 * 239.99911 * 27 25 23 31 31 H 1.08999 * 109.47253 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47202 * 300.00177 * 1 2 3 33 33 H 1.09000 * 109.47062 * 59.99915 * 1 2 3 34 34 H 1.08992 * 109.46997 * 180.02562 * 5 3 2 35 35 H 1.08997 * 109.47154 * 300.00327 * 5 3 2 36 36 H 1.09000 * 109.46842 * 60.00577 * 5 3 2 37 37 H 1.08997 * 109.46989 * 304.99364 * 6 3 2 38 38 H 1.09004 * 109.47064 * 184.99936 * 6 3 2 39 39 H 1.08006 * 120.85685 * 359.97438 * 10 9 8 40 40 H 1.08003 * 120.34774 * 180.02562 * 11 10 9 41 41 H 1.07999 * 119.46064 * 180.02562 * 12 11 10 42 42 H 1.08000 * 119.71618 * 180.28930 * 14 13 12 43 43 H 1.09001 * 109.46914 * 55.05814 * 19 18 17 44 44 H 1.08996 * 109.46917 * 175.05884 * 19 18 17 45 45 H 1.09007 * 109.46850 * 295.05778 * 19 18 17 46 46 H 1.08998 * 109.47337 * 299.99862 * 22 20 18 47 47 H 1.08996 * 109.47078 * 60.00752 * 22 20 18 48 48 H 1.09000 * 109.46784 * 180.02562 * 22 20 18 49 49 H 0.96998 * 119.99403 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 -0.5139 5 6 2.2177 1.7715 1.4425 6 6 3.3589 1.2632 -0.7213 7 7 3.1477 0.9330 -2.1329 8 6 3.0364 -0.3219 -2.6850 9 6 3.1070 -1.6097 -1.9619 10 6 2.3328 -2.7007 -2.3741 11 6 2.4359 -3.8836 -1.6639 12 6 3.2929 -3.9500 -0.5798 13 7 4.0106 -2.9054 -0.2141 14 6 3.9510 -1.7597 -0.8611 15 7 2.8524 -0.1602 -3.9745 16 7 2.8497 1.0922 -4.2631 17 6 3.0263 1.8062 -3.1746 18 7 3.0788 3.1872 -3.0985 19 6 4.4660 3.6554 -2.9781 20 6 2.4135 3.8039 -4.2539 21 1 2.9089 3.4853 -5.1710 22 6 0.9468 3.3699 -4.2892 23 6 2.4913 5.3042 -4.1366 24 1 2.9853 5.7546 -3.2883 25 6 1.9320 6.1020 -5.1121 26 7 1.3309 5.5535 -6.1454 27 14 2.0279 7.9618 -4.9664 28 1 2.7501 8.3241 -3.7205 29 1 2.7541 8.5134 -6.1384 30 1 0.6550 8.5265 -4.9242 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 2.6606 2.7673 1.4424 35 1 1.2569 1.8015 1.9563 36 1 2.8830 1.0776 1.9563 37 1 3.9931 0.5052 -0.2617 38 1 3.8427 2.2370 -0.6444 39 1 1.6720 -2.6212 -3.2247 40 1 1.8541 -4.7463 -1.9532 41 1 3.3756 -4.8722 -0.0239 42 1 4.5576 -0.9282 -0.5342 43 1 5.0565 3.2582 -3.8037 44 1 4.4857 4.7447 -3.0083 45 1 4.8851 3.3105 -2.0327 46 1 0.8908 2.2847 -4.3743 47 1 0.4514 3.6885 -3.3721 48 1 0.4532 3.8272 -5.1468 49 1 0.9371 6.1147 -6.8315 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433391108.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:40 Heat of formation + Delta-G solvation = 95.820390 kcal Electronic energy + Delta-G solvation = -32020.880811 eV Core-core repulsion = 27985.793344 eV Total energy + Delta-G solvation = -4035.087466 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.54499 -39.98064 -38.50336 -37.16127 -34.97805 -33.21517 -32.73310 -31.92387 -31.48419 -29.32059 -28.76617 -27.23692 -26.53755 -25.54876 -24.45060 -24.03184 -23.51258 -21.92809 -21.72572 -20.63730 -19.47734 -17.37129 -17.25107 -16.86758 -16.41247 -16.33279 -15.92032 -15.72278 -15.29553 -15.11381 -14.73735 -14.51989 -13.96843 -13.96672 -13.65897 -13.52127 -13.16761 -13.11090 -12.90215 -12.74613 -12.48169 -12.34762 -12.07038 -11.77706 -11.68128 -11.17772 -11.10509 -11.01882 -10.99520 -10.73861 -10.54364 -10.29620 -10.18550 -10.13700 -10.07655 -9.96996 -9.66948 -9.56022 -9.38451 -9.12945 -8.59207 -8.40131 -7.50382 -6.09919 -4.17600 0.75743 1.18771 2.20510 2.54714 3.23824 3.27082 3.31994 3.34286 3.55772 3.81699 4.14096 4.25608 4.32406 4.50793 4.56706 4.67486 4.75639 4.86851 4.91630 4.98012 5.07661 5.19798 5.22225 5.25698 5.32314 5.36062 5.48339 5.51317 5.58467 5.60744 5.66914 5.74542 5.94030 5.96233 6.00225 6.08779 6.21280 6.27577 6.45547 6.51726 6.78849 6.88430 7.00974 7.04258 7.13594 7.37510 7.61423 7.67873 7.82725 7.89419 8.17928 8.38012 8.84403 9.20227 9.47265 10.96551 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.016564 B = 0.003332 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.032896 B = 8401.186209 C = 8980.588105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.377 6.377 3 C 0.071 3.929 4 H 0.076 0.924 5 C -0.169 4.169 6 C 0.110 3.890 7 N -0.472 5.472 8 C 0.196 3.804 9 C -0.026 4.026 10 C -0.041 4.041 11 C -0.169 4.169 12 C 0.096 3.904 13 N -0.479 5.479 14 C 0.118 3.882 15 N -0.269 5.269 16 N -0.310 5.310 17 C 0.391 3.609 18 N -0.464 5.464 19 C 0.038 3.962 20 C 0.229 3.771 21 H 0.026 0.974 22 C -0.132 4.132 23 C -0.517 4.517 24 H 0.066 0.934 25 C 0.064 3.936 26 N -0.883 5.883 27 Si 0.900 3.100 28 H -0.273 1.273 29 H -0.284 1.284 30 H -0.284 1.284 31 H 0.082 0.918 32 H 0.040 0.960 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.097 0.903 38 H 0.114 0.886 39 H 0.141 0.859 40 H 0.137 0.863 41 H 0.155 0.845 42 H 0.150 0.850 43 H 0.030 0.970 44 H 0.101 0.899 45 H 0.046 0.954 46 H 0.019 0.981 47 H 0.025 0.975 48 H 0.090 0.910 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.980 -13.777 14.990 20.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.295 6.295 3 C 0.012 3.988 4 H 0.094 0.906 5 C -0.227 4.227 6 C -0.013 4.013 7 N -0.166 5.166 8 C -0.069 4.069 9 C -0.031 4.031 10 C -0.068 4.068 11 C -0.189 4.189 12 C -0.061 4.061 13 N -0.187 5.187 14 C -0.041 4.041 15 N -0.110 5.110 16 N -0.155 5.155 17 C 0.036 3.964 18 N -0.189 5.189 19 C -0.109 4.109 20 C 0.125 3.875 21 H 0.044 0.956 22 C -0.190 4.190 23 C -0.555 4.555 24 H 0.084 0.916 25 C -0.139 4.139 26 N -0.521 5.521 27 Si 0.727 3.273 28 H -0.197 1.197 29 H -0.210 1.210 30 H -0.210 1.210 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.115 0.885 38 H 0.132 0.868 39 H 0.159 0.841 40 H 0.155 0.845 41 H 0.172 0.828 42 H 0.167 0.833 43 H 0.048 0.952 44 H 0.119 0.881 45 H 0.064 0.936 46 H 0.038 0.962 47 H 0.044 0.956 48 H 0.108 0.892 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.079 -14.063 14.471 20.286 hybrid contribution -0.412 1.554 0.057 1.609 sum 1.667 -12.509 14.529 19.244 Atomic orbital electron populations 1.22727 0.80964 1.02428 1.00015 1.87922 1.19756 1.26799 1.95051 1.22466 0.94482 0.85966 0.95902 0.90573 1.22187 1.02951 1.01979 0.95597 1.22214 0.97656 1.03992 0.77437 1.46214 1.56168 1.05986 1.08256 1.22131 1.08931 0.84718 0.91121 1.18305 0.98810 0.89865 0.96082 1.21604 0.95767 0.91258 0.98198 1.22045 1.00929 0.98571 0.97340 1.22775 0.92049 0.96890 0.94412 1.67631 1.22132 0.99652 1.29309 1.22756 0.95351 0.95183 0.90846 1.74337 1.16284 1.11087 1.09285 1.74851 1.22605 0.96727 1.21301 1.23057 0.99169 0.91343 0.82823 1.59155 1.16461 0.95763 1.47554 1.22371 0.86016 1.03663 0.98860 1.19353 0.91075 0.93031 0.84068 0.95579 1.21809 0.98260 0.97214 1.01764 1.21083 1.37379 0.89436 1.07640 0.91590 1.24907 0.94971 0.98925 0.95075 1.69930 1.36522 1.35110 1.10501 0.86424 0.77815 0.85019 0.78017 1.19713 1.20970 1.20973 0.89912 0.94137 0.93963 0.90918 0.91815 0.91542 0.88464 0.86790 0.84128 0.84472 0.82796 0.83293 0.95152 0.88062 0.93560 0.96249 0.95629 0.89166 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.82 101.05 1.09 1.49 16 2 O -0.38 -4.77 9.02 -35.23 -0.32 -5.09 16 3 C 0.07 0.85 2.96 -26.73 -0.08 0.77 16 4 H 0.08 1.09 7.79 -51.93 -0.40 0.69 16 5 C -0.17 -1.55 9.53 37.16 0.35 -1.19 16 6 C 0.11 1.37 5.51 -4.04 -0.02 1.35 16 7 N -0.47 -7.80 2.80 -114.68 -0.32 -8.12 16 8 C 0.20 3.35 7.28 -153.78 -1.12 2.23 16 9 C -0.03 -0.36 4.94 -104.82 -0.52 -0.88 16 10 C -0.04 -0.50 9.92 -38.88 -0.39 -0.88 16 11 C -0.17 -1.61 10.10 -39.50 -0.40 -2.01 16 12 C 0.10 0.95 11.17 -17.48 -0.20 0.75 16 13 N -0.48 -5.83 10.35 -12.91 -0.13 -5.96 16 14 C 0.12 1.49 9.98 -17.12 -0.17 1.32 16 15 N -0.27 -5.52 12.20 32.59 0.40 -5.12 16 16 N -0.31 -7.05 10.07 30.31 0.31 -6.74 16 17 C 0.39 7.93 5.99 -318.90 -1.91 6.02 16 18 N -0.46 -9.68 4.63 -176.09 -0.81 -10.49 16 19 C 0.04 0.69 9.28 60.07 0.56 1.24 16 20 C 0.23 5.72 1.73 -68.87 -0.12 5.60 16 21 H 0.03 0.75 7.90 -51.93 -0.41 0.34 16 22 C -0.13 -3.35 8.80 37.16 0.33 -3.02 16 23 C -0.52 -13.40 7.81 -34.44 -0.27 -13.67 16 24 H 0.07 1.65 6.44 -52.48 -0.34 1.31 16 25 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 26 N -0.88 -24.76 11.32 55.43 0.63 -24.13 16 27 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 28 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 29 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 30 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.04 0.39 7.87 -51.93 -0.41 -0.02 16 33 H 0.04 0.53 8.08 -51.93 -0.42 0.11 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.56 7.87 -51.93 -0.41 0.15 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.10 1.03 4.81 -51.93 -0.25 0.78 16 38 H 0.11 1.31 6.71 -51.93 -0.35 0.96 16 39 H 0.14 1.71 8.06 -52.48 -0.42 1.28 16 40 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 41 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.15 1.71 5.49 -52.49 -0.29 1.42 16 43 H 0.03 0.57 8.11 -51.93 -0.42 0.14 16 44 H 0.10 1.87 5.96 -51.93 -0.31 1.56 16 45 H 0.05 0.66 6.82 -51.92 -0.35 0.31 16 46 H 0.02 0.47 6.28 -51.93 -0.33 0.15 16 47 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 49 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 393.63 15.07 5.93 5.93 Total: -1.00 -31.94 393.63 -9.39 -41.33 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -7.10 Total: 2.26 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -2.95 Total: 0.72 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: 0.06 Total: -60.56 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.32 Total: -5.09 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.94 -9.39 -41.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433391108.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.149 kcal (2) G-P(sol) polarization free energy of solvation -31.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds