Wall clock time and date at job start Wed Apr 1 2020 04:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00148 * 2 1 4 4 H 1.09000 * 109.47061 * 329.99724 * 3 2 1 5 5 C 1.53002 * 109.47437 * 89.99598 * 3 2 1 6 6 C 1.52998 * 109.47163 * 210.00182 * 3 2 1 7 7 N 1.46501 * 109.47420 * 64.99810 * 6 3 2 8 8 C 1.37551 * 127.16321 * 274.44754 * 7 6 3 9 9 C 1.47863 * 126.47021 * 0.02562 * 8 7 6 10 10 C 1.39989 * 120.55725 * 145.65817 * 9 8 7 11 11 C 1.38357 * 118.29212 * 179.97438 * 10 9 8 12 12 C 1.38347 * 119.30462 * 359.97438 * 11 10 9 13 13 N 1.31910 * 121.07990 * 0.02562 * 12 11 10 14 14 C 1.31710 * 121.87506 * 359.71207 * 13 12 11 15 15 N 1.31257 * 107.05675 * 179.86790 * 8 7 6 16 16 N 1.28515 * 109.93575 * 0.40827 * 15 8 7 17 17 C 1.31372 * 110.07685 * 359.73824 * 16 15 8 18 18 N 1.38410 * 126.36917 * 180.02562 * 17 16 15 19 19 C 1.46903 * 111.00017 * 258.05562 * 18 17 16 20 20 C 1.46897 * 111.00060 * 22.01301 * 18 17 16 21 21 H 1.09001 * 109.46521 * 299.99692 * 20 18 17 22 22 C 1.52996 * 109.47081 * 59.99736 * 20 18 17 23 23 C 1.50696 * 109.47044 * 180.02562 * 20 18 17 24 24 H 1.08003 * 119.99953 * 359.97438 * 23 20 18 25 25 C 1.37881 * 120.00186 * 179.97438 * 23 20 18 26 26 N 1.31521 * 119.99616 * 359.97438 * 25 23 20 27 27 Si 1.86792 * 120.00294 * 179.97438 * 25 23 20 28 28 H 1.48501 * 109.47299 * 359.97438 * 27 25 23 29 29 H 1.48508 * 109.47329 * 120.00028 * 27 25 23 30 30 H 1.48505 * 109.47266 * 239.99911 * 27 25 23 31 31 H 1.08999 * 109.47253 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47202 * 300.00177 * 1 2 3 33 33 H 1.09000 * 109.47062 * 59.99915 * 1 2 3 34 34 H 1.08992 * 109.46997 * 180.02562 * 5 3 2 35 35 H 1.08997 * 109.47154 * 300.00327 * 5 3 2 36 36 H 1.09000 * 109.46842 * 60.00577 * 5 3 2 37 37 H 1.08997 * 109.46989 * 304.99364 * 6 3 2 38 38 H 1.09004 * 109.47064 * 184.99936 * 6 3 2 39 39 H 1.08006 * 120.85685 * 359.97438 * 10 9 8 40 40 H 1.08003 * 120.34774 * 180.02562 * 11 10 9 41 41 H 1.07999 * 119.46064 * 180.02562 * 12 11 10 42 42 H 1.08000 * 119.71618 * 180.28930 * 14 13 12 43 43 H 1.09001 * 109.46914 * 55.05814 * 19 18 17 44 44 H 1.08996 * 109.46917 * 175.05884 * 19 18 17 45 45 H 1.09007 * 109.46850 * 295.05778 * 19 18 17 46 46 H 1.08998 * 109.47337 * 299.99862 * 22 20 18 47 47 H 1.08996 * 109.47078 * 60.00752 * 22 20 18 48 48 H 1.09000 * 109.46784 * 180.02562 * 22 20 18 49 49 H 0.96998 * 119.99403 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 -0.5139 5 6 2.2177 1.7715 1.4425 6 6 3.3589 1.2632 -0.7213 7 7 3.1477 0.9330 -2.1329 8 6 3.0364 -0.3219 -2.6850 9 6 3.1070 -1.6097 -1.9619 10 6 2.3328 -2.7007 -2.3741 11 6 2.4359 -3.8836 -1.6639 12 6 3.2929 -3.9500 -0.5798 13 7 4.0106 -2.9054 -0.2141 14 6 3.9510 -1.7597 -0.8611 15 7 2.8524 -0.1602 -3.9745 16 7 2.8497 1.0922 -4.2631 17 6 3.0263 1.8062 -3.1746 18 7 3.0788 3.1872 -3.0985 19 6 4.4660 3.6554 -2.9781 20 6 2.4135 3.8039 -4.2539 21 1 2.9089 3.4853 -5.1710 22 6 0.9468 3.3699 -4.2892 23 6 2.4913 5.3042 -4.1366 24 1 2.9853 5.7546 -3.2883 25 6 1.9320 6.1020 -5.1121 26 7 1.3309 5.5535 -6.1454 27 14 2.0279 7.9618 -4.9664 28 1 2.7501 8.3241 -3.7205 29 1 2.7541 8.5134 -6.1384 30 1 0.6550 8.5265 -4.9242 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 2.6606 2.7673 1.4424 35 1 1.2569 1.8015 1.9563 36 1 2.8830 1.0776 1.9563 37 1 3.9931 0.5052 -0.2617 38 1 3.8427 2.2370 -0.6444 39 1 1.6720 -2.6212 -3.2247 40 1 1.8541 -4.7463 -1.9532 41 1 3.3756 -4.8722 -0.0239 42 1 4.5576 -0.9282 -0.5342 43 1 5.0565 3.2582 -3.8037 44 1 4.4857 4.7447 -3.0083 45 1 4.8851 3.3105 -2.0327 46 1 0.8908 2.2847 -4.3743 47 1 0.4514 3.6885 -3.3721 48 1 0.4532 3.8272 -5.1468 49 1 0.9371 6.1147 -6.8315 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433391108.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:39 Heat of formation + Delta-G solvation = 76.879654 kcal Electronic energy + Delta-G solvation = -32021.702143 eV Core-core repulsion = 27985.793344 eV Total energy + Delta-G solvation = -4035.908798 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.98023 -40.90406 -39.46861 -38.87360 -36.21480 -34.95425 -33.94464 -32.84974 -32.56157 -31.24188 -30.15857 -28.23492 -27.61884 -27.28032 -26.11239 -25.11580 -24.51083 -23.47567 -22.86233 -21.85679 -21.10823 -18.63006 -18.34856 -18.17519 -17.76997 -17.61214 -17.12587 -16.98966 -16.65570 -16.32852 -16.19036 -15.79029 -15.44674 -15.01271 -14.82132 -14.78932 -14.45415 -14.08195 -14.04277 -13.86669 -13.72440 -13.53668 -13.25433 -13.02097 -12.91670 -12.74398 -12.66951 -12.59379 -12.46034 -12.25858 -12.15538 -12.08102 -11.98171 -11.72883 -11.28590 -11.17829 -11.01875 -10.62596 -10.60265 -10.54354 -10.41259 -9.90117 -9.10322 -8.13724 -6.28760 -0.23399 0.29293 0.87131 1.23102 1.44929 1.46341 1.58148 1.82038 2.40878 2.63543 2.87597 2.91483 3.10550 3.17744 3.35510 3.59079 3.72723 3.88868 3.90041 4.02095 4.04826 4.07890 4.12275 4.30842 4.39336 4.39919 4.47759 4.50112 4.53017 4.69633 4.71386 4.74167 4.77785 4.80051 4.84152 4.89571 4.94718 4.99850 5.08808 5.15062 5.21931 5.24529 5.40429 5.48052 5.62964 5.68996 5.85024 5.94672 6.08497 6.13390 6.54601 6.81685 6.94706 7.40194 7.71425 8.93584 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.016564 B = 0.003332 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.032896 B = 8401.186209 C = 8980.588105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.386 6.386 3 C 0.073 3.927 4 H 0.047 0.953 5 C -0.160 4.160 6 C 0.102 3.898 7 N -0.462 5.462 8 C 0.223 3.777 9 C -0.055 4.055 10 C -0.050 4.050 11 C -0.156 4.156 12 C 0.105 3.895 13 N -0.492 5.492 14 C 0.121 3.879 15 N -0.312 5.312 16 N -0.359 5.359 17 C 0.376 3.624 18 N -0.458 5.458 19 C 0.038 3.962 20 C 0.241 3.759 21 H -0.021 1.021 22 C -0.114 4.114 23 C -0.524 4.524 24 H 0.078 0.922 25 C 0.012 3.988 26 N -0.920 5.920 27 Si 0.969 3.031 28 H -0.256 1.256 29 H -0.284 1.284 30 H -0.283 1.283 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.017 0.983 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.122 0.878 38 H 0.127 0.873 39 H 0.133 0.867 40 H 0.174 0.826 41 H 0.193 0.807 42 H 0.158 0.842 43 H 0.014 0.986 44 H 0.097 0.903 45 H 0.089 0.911 46 H 0.012 0.988 47 H 0.027 0.973 48 H 0.064 0.936 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.818 -14.940 18.613 24.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.306 6.306 3 C 0.014 3.986 4 H 0.065 0.935 5 C -0.218 4.218 6 C -0.020 4.020 7 N -0.156 5.156 8 C -0.044 4.044 9 C -0.060 4.060 10 C -0.078 4.078 11 C -0.175 4.175 12 C -0.052 4.052 13 N -0.201 5.201 14 C -0.037 4.037 15 N -0.152 5.152 16 N -0.203 5.203 17 C 0.019 3.981 18 N -0.183 5.183 19 C -0.108 4.108 20 C 0.135 3.865 21 H -0.003 1.003 22 C -0.172 4.172 23 C -0.562 4.562 24 H 0.096 0.904 25 C -0.187 4.187 26 N -0.559 5.559 27 Si 0.794 3.206 28 H -0.180 1.180 29 H -0.210 1.210 30 H -0.209 1.209 31 H 0.114 0.886 32 H 0.077 0.923 33 H 0.036 0.964 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.139 0.861 38 H 0.145 0.855 39 H 0.151 0.849 40 H 0.191 0.809 41 H 0.210 0.790 42 H 0.175 0.825 43 H 0.033 0.967 44 H 0.115 0.885 45 H 0.107 0.893 46 H 0.031 0.969 47 H 0.046 0.954 48 H 0.083 0.917 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.934 -15.240 18.132 23.867 hybrid contribution -0.670 1.647 -0.987 2.034 sum 2.263 -13.593 17.145 21.997 Atomic orbital electron populations 1.22778 0.80381 1.03236 0.99681 1.87896 1.20400 1.27085 1.95174 1.22465 0.93402 0.85267 0.97451 0.93499 1.22129 1.03681 1.02752 0.93208 1.22643 0.98692 1.05518 0.75111 1.46333 1.55124 1.05000 1.09102 1.22736 1.05314 0.85963 0.90352 1.18369 1.01317 0.88911 0.97382 1.21743 0.95623 0.92000 0.98438 1.22395 1.00472 0.98357 0.96268 1.23478 0.90320 0.97397 0.94015 1.67728 1.22925 0.99917 1.29494 1.22805 0.94897 0.95926 0.90109 1.74230 1.19207 1.10315 1.11464 1.74710 1.24122 0.97996 1.23484 1.22883 1.00386 0.91158 0.83652 1.59093 1.17806 0.96251 1.45136 1.22463 0.84543 1.03344 1.00485 1.18944 0.90456 0.93213 0.83839 1.00321 1.21571 0.98747 0.96405 1.00495 1.21389 1.37063 0.89842 1.07895 0.90386 1.25805 0.94551 1.03750 0.94641 1.70091 1.37555 1.36845 1.11403 0.85331 0.77732 0.79059 0.78436 1.17987 1.20992 1.20950 0.88564 0.92318 0.96430 0.89844 0.91328 0.90218 0.86062 0.85498 0.84920 0.80887 0.79014 0.82522 0.96671 0.88454 0.89296 0.96917 0.95410 0.91736 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.82 113.37 1.23 1.99 16 2 O -0.39 -9.27 9.02 -148.98 -1.34 -10.62 16 3 C 0.07 1.66 2.96 30.59 0.09 1.75 16 4 H 0.05 1.35 7.79 -2.39 -0.02 1.33 16 5 C -0.16 -2.49 9.53 71.98 0.69 -1.80 16 6 C 0.10 2.37 5.51 86.38 0.48 2.85 16 7 N -0.46 -15.36 2.80 -516.74 -1.45 -16.81 16 8 C 0.22 7.77 7.28 136.23 0.99 8.76 16 9 C -0.05 -1.49 4.94 -19.99 -0.10 -1.59 16 10 C -0.05 -1.17 9.92 22.72 0.23 -0.95 16 11 C -0.16 -2.42 10.10 22.32 0.23 -2.20 16 12 C 0.10 1.63 11.17 84.71 0.95 2.58 16 13 N -0.49 -10.36 10.35 -194.76 -2.01 -12.37 16 14 C 0.12 2.81 9.98 85.02 0.85 3.66 16 15 N -0.31 -13.51 12.20 -50.80 -0.62 -14.13 16 16 N -0.36 -17.34 10.07 -58.02 -0.58 -17.92 16 17 C 0.38 15.83 5.99 260.12 1.56 17.38 16 18 N -0.46 -19.61 4.63 -711.03 -3.29 -22.90 16 19 C 0.04 1.38 9.28 127.69 1.19 2.56 16 20 C 0.24 12.65 1.73 44.17 0.08 12.73 16 21 H -0.02 -1.28 7.90 -2.39 -0.02 -1.30 16 22 C -0.11 -6.11 8.80 71.98 0.63 -5.47 16 23 C -0.52 -27.68 7.81 25.60 0.20 -27.48 16 24 H 0.08 3.86 6.44 -2.91 -0.02 3.84 16 25 C 0.01 0.64 5.30 84.65 0.45 1.09 16 26 N -0.92 -53.62 11.32 21.45 0.24 -53.38 16 27 Si 0.97 42.18 29.54 68.60 2.03 44.21 16 28 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 29 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 30 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 31 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 1.03 7.87 -2.39 -0.02 1.01 16 33 H 0.02 0.45 8.08 -2.39 -0.02 0.43 16 34 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.02 7.87 -2.39 -0.02 1.00 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.12 2.26 4.81 -2.39 -0.01 2.25 16 38 H 0.13 2.62 6.71 -2.38 -0.02 2.60 16 39 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 40 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 41 H 0.19 1.51 8.06 -2.91 -0.02 1.48 16 42 H 0.16 3.21 5.49 -2.91 -0.02 3.20 16 43 H 0.01 0.57 8.11 -2.39 -0.02 0.55 16 44 H 0.10 3.56 5.96 -2.39 -0.01 3.55 16 45 H 0.09 2.40 6.82 -2.38 -0.02 2.38 16 46 H 0.01 0.65 6.28 -2.39 -0.02 0.63 16 47 H 0.03 1.40 8.14 -2.39 -0.02 1.39 16 48 H 0.06 3.77 6.07 -2.39 -0.01 3.76 16 49 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -74.16 393.63 3.66 -70.50 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.97 Total: 17.55 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 9.72 Total: 15.87 kcal Atomic # 7 Polarization: -129.80 SS G_CDS: -7.71 Total: -137.51 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -1.34 Total: -10.62 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -74.16 3.66 -70.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433391108.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.381 kcal (2) G-P(sol) polarization free energy of solvation -74.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds