Wall clock time and date at job start Wed Apr 1 2020 04:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.46768 * 2 1 4 4 C 1.50700 * 109.46763 * 119.99481 * 2 1 3 5 5 H 1.07998 * 119.99783 * 119.99860 * 4 2 1 6 6 C 1.37881 * 120.00330 * 300.00224 * 4 2 1 7 7 N 1.31510 * 119.99586 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00071 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46889 * 59.99990 * 8 6 4 10 10 H 1.48492 * 109.46850 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47061 * 300.00205 * 8 6 4 12 12 N 1.46898 * 109.47150 * 239.99475 * 2 1 3 13 13 C 1.46899 * 110.99954 * 306.05031 * 12 2 1 14 14 C 1.38494 * 110.99901 * 70.00290 * 12 2 1 15 15 N 1.31299 * 126.35015 * 341.19070 * 14 12 2 16 16 N 1.28504 * 110.14936 * 180.02562 * 15 14 12 17 17 C 1.31484 * 109.93042 * 359.97438 * 16 15 14 18 18 C 1.47225 * 126.50339 * 179.97438 * 17 16 15 19 19 C 1.36519 * 126.09323 * 18.75285 * 18 17 16 20 20 C 1.40347 * 107.32803 * 179.97438 * 19 18 17 21 21 C 1.35106 * 107.74921 * 0.02562 * 20 19 18 22 22 N 1.36358 * 108.53141 * 359.72931 * 21 20 19 23 23 H 0.97003 * 125.70749 * 180.30121 * 22 21 20 24 24 N 1.36617 * 126.35513 * 161.21607 * 14 12 2 25 25 C 1.46501 * 127.17939 * 0.23927 * 24 14 12 26 26 C 1.53005 * 109.47009 * 263.73130 * 25 24 14 27 27 C 1.52993 * 112.99640 * 43.88237 * 26 25 24 28 28 C 1.54039 * 113.81582 * 271.89148 * 26 25 24 29 29 O 1.44179 * 85.51735 * 223.19401 * 28 26 25 30 30 C 1.44179 * 93.33684 * 24.19674 * 29 28 26 31 31 H 1.09000 * 109.46699 * 60.00407 * 1 2 3 32 32 H 1.08997 * 109.46768 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47357 * 300.00408 * 1 2 3 34 34 H 0.96999 * 119.99935 * 180.02562 * 7 6 4 35 35 H 1.09004 * 109.46883 * 190.84510 * 13 12 2 36 36 H 1.08996 * 109.47164 * 310.83582 * 13 12 2 37 37 H 1.08997 * 109.47473 * 70.84425 * 13 12 2 38 38 H 1.07999 * 126.33763 * 0.02562 * 19 18 17 39 39 H 1.07998 * 126.12461 * 180.02562 * 20 19 18 40 40 H 1.07991 * 125.73434 * 180.02562 * 21 20 19 41 41 H 1.08998 * 109.47413 * 23.73049 * 25 24 14 42 42 H 1.09000 * 109.46806 * 143.73819 * 25 24 14 43 43 H 1.08998 * 109.47573 * 60.00235 * 27 26 25 44 44 H 1.09005 * 109.46991 * 180.02562 * 27 26 25 45 45 H 1.09000 * 109.47616 * 299.99478 * 27 26 25 46 46 H 1.08993 * 113.86359 * 337.34501 * 28 26 25 47 47 H 1.09004 * 113.85595 * 109.04813 * 28 26 25 48 48 H 1.09007 * 113.86436 * 221.65752 * 30 29 28 49 49 H 1.09001 * 113.86571 * 89.95537 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6033 8 14 2.3224 -1.1193 4.0081 9 1 3.8074 -1.1187 4.0079 10 1 1.8277 -0.4189 5.2204 11 1 1.8280 -2.5196 4.0083 12 7 2.0198 -0.6926 -1.1994 13 6 1.4343 -2.0355 -1.3076 14 6 1.7683 0.0519 -2.3398 15 7 0.8978 1.0279 -2.4558 16 7 0.9206 1.5018 -3.6500 17 6 1.8100 0.8560 -4.3716 18 6 2.1342 1.1004 -5.7868 19 6 1.8509 2.2342 -6.4924 20 6 2.3324 2.0458 -7.7972 21 6 2.8906 0.8168 -7.8567 22 7 2.7803 0.2309 -6.6304 23 1 3.1027 -0.6530 -6.3942 24 7 2.3797 -0.0934 -3.5529 25 6 3.4201 -1.0611 -3.9097 26 6 4.7949 -0.4014 -3.7842 27 6 4.9425 0.4353 -2.5119 28 6 5.2576 0.3204 -5.0640 29 8 6.5405 -0.2846 -4.8057 30 6 5.9715 -1.3630 -4.0364 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 0.7086 1.1614 3.4843 35 1 1.9517 -2.5957 -2.0865 36 1 1.5394 -2.5556 -0.3555 37 1 0.3776 -1.9519 -1.5613 38 1 1.3499 3.1138 -6.1161 39 1 2.2682 2.7559 -8.6083 40 1 3.3514 0.3749 -8.7277 41 1 3.3654 -1.9177 -3.2379 42 1 3.2694 -1.3944 -4.9365 43 1 4.8004 -0.2022 -1.6393 44 1 5.9385 0.8771 -2.4811 45 1 4.1938 1.2275 -2.5090 46 1 4.7749 -0.0398 -5.9724 47 1 5.2579 1.4073 -4.9814 48 1 6.5381 -1.6114 -3.1389 49 1 5.7069 -2.2373 -4.6312 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460396893.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:26 Heat of formation + Delta-G solvation = 152.634812 kcal Electronic energy + Delta-G solvation = -32416.056284 eV Core-core repulsion = 28383.432476 eV Total energy + Delta-G solvation = -4032.623808 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.72736 -41.11472 -40.75010 -37.36862 -35.44027 -32.90463 -31.82516 -31.26456 -30.82643 -28.78521 -28.00029 -27.46918 -26.88568 -25.77467 -25.28454 -25.05143 -22.48931 -21.75703 -20.84555 -20.29141 -19.62967 -19.12838 -17.94779 -16.91968 -16.81723 -16.26303 -16.17443 -15.77777 -15.49598 -15.18140 -14.71879 -14.49361 -14.36516 -13.92572 -13.78552 -13.66122 -13.15997 -13.09302 -12.68169 -12.51607 -12.47448 -12.30743 -12.19042 -11.93426 -11.62156 -11.49805 -11.33906 -11.11837 -10.96157 -10.84830 -10.79562 -10.50687 -10.32344 -10.12765 -10.04304 -9.92649 -9.77435 -9.36902 -9.04690 -8.92507 -8.45730 -8.17869 -7.37763 -6.07199 -4.14922 1.38461 2.31135 2.44888 2.82891 2.92209 3.26691 3.32705 3.33283 3.36700 3.48221 3.74426 4.21272 4.29551 4.31277 4.42784 4.53858 4.71750 4.85212 4.87148 4.95784 5.04076 5.23836 5.28704 5.31081 5.32586 5.49873 5.61413 5.62242 5.67919 5.77281 5.85111 5.89560 5.94782 5.95676 6.05555 6.17833 6.24364 6.37347 6.39253 6.67865 6.77418 6.82523 6.91255 7.06176 7.21329 7.22434 7.40504 7.57053 7.69576 7.91427 8.25030 8.39100 8.86272 9.18096 9.49822 10.98853 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.014679 B = 0.003697 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.967565 B = 7572.760690 C = 8800.952962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.231 3.769 3 H 0.048 0.952 4 C -0.514 4.514 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.456 5.456 13 C 0.037 3.963 14 C 0.394 3.606 15 N -0.306 5.306 16 N -0.259 5.259 17 C 0.213 3.787 18 C 0.091 3.909 19 C -0.136 4.136 20 C -0.196 4.196 21 C -0.001 4.001 22 N -0.562 5.562 23 H 0.408 0.592 24 N -0.483 5.483 25 C 0.122 3.878 26 C -0.139 4.139 27 C -0.124 4.124 28 C 0.040 3.960 29 O -0.373 6.373 30 C 0.047 3.953 31 H 0.045 0.955 32 H 0.022 0.978 33 H 0.089 0.911 34 H 0.263 0.737 35 H 0.043 0.957 36 H 0.097 0.903 37 H 0.033 0.967 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.168 0.832 41 H 0.111 0.889 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.076 0.924 47 H 0.094 0.906 48 H 0.100 0.900 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.064 -5.397 -19.249 21.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.127 3.873 3 H 0.066 0.934 4 C -0.553 4.553 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.180 5.180 13 C -0.110 4.110 14 C 0.040 3.960 15 N -0.150 5.150 16 N -0.100 5.100 17 C -0.051 4.051 18 C -0.021 4.021 19 C -0.164 4.164 20 C -0.221 4.221 21 C -0.133 4.133 22 N -0.163 5.163 23 H 0.248 0.752 24 N -0.179 5.179 25 C -0.002 4.002 26 C -0.141 4.141 27 C -0.181 4.181 28 C -0.036 4.036 29 O -0.292 6.292 30 C -0.030 4.030 31 H 0.064 0.936 32 H 0.041 0.959 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.116 0.884 37 H 0.052 0.948 38 H 0.164 0.836 39 H 0.159 0.841 40 H 0.185 0.815 41 H 0.129 0.871 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.094 0.906 47 H 0.112 0.888 48 H 0.119 0.881 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.715 -4.438 -18.623 20.288 hybrid contribution 0.550 -1.839 0.613 2.015 sum 7.264 -6.277 -18.011 20.410 Atomic orbital electron populations 1.22497 0.98859 0.99232 1.02954 1.19367 0.91459 0.94278 0.82211 0.93390 1.20941 1.31912 1.13026 0.89394 0.91934 1.24883 0.94989 0.95041 0.98894 1.69904 1.35908 1.22492 1.23795 0.86554 0.79140 0.79544 0.82091 1.20247 1.21268 1.20310 1.59377 1.56779 1.02885 0.98977 1.22350 0.96900 0.88702 1.03079 1.23158 0.90668 0.96849 0.85361 1.74945 1.17646 1.12299 1.10114 1.74443 1.15434 1.21483 0.98620 1.21446 0.98865 0.93496 0.91272 1.16968 1.06250 0.92770 0.86135 1.20981 1.04549 0.97475 0.93376 1.20862 1.06164 0.97315 0.97748 1.21925 1.07423 0.95838 0.88082 1.42477 1.47648 1.16136 1.10006 0.75227 1.46309 1.31839 1.29138 1.10602 1.21930 0.85532 0.91794 1.00917 1.24145 0.93690 0.97503 0.98714 1.21511 1.02091 0.99834 0.94677 1.24327 0.83327 1.00233 0.95759 1.89704 1.26034 1.40059 1.73387 1.24058 0.92066 0.90871 0.96006 0.93611 0.95900 0.89268 0.92669 0.93825 0.88426 0.94795 0.83580 0.84099 0.81471 0.87098 0.90939 0.89789 0.91809 0.91985 0.90605 0.88784 0.88143 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.33 8.20 37.16 0.30 -4.03 16 2 C 0.23 5.63 2.04 -68.86 -0.14 5.49 16 3 H 0.05 1.36 8.02 -51.93 -0.42 0.94 16 4 C -0.51 -13.19 7.81 -34.44 -0.27 -13.46 16 5 H 0.06 1.55 7.19 -52.49 -0.38 1.18 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.88 -24.67 11.32 55.43 0.63 -24.04 16 8 Si 0.90 20.46 29.54 -169.99 -5.02 15.43 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 N -0.46 -9.08 4.69 -176.04 -0.83 -9.91 16 13 C 0.04 0.64 8.38 60.06 0.50 1.14 16 14 C 0.39 7.62 5.63 -318.67 -1.79 5.83 16 15 N -0.31 -6.71 9.21 30.34 0.28 -6.43 16 16 N -0.26 -5.20 12.23 32.50 0.40 -4.80 16 17 C 0.21 3.49 7.90 -153.74 -1.21 2.27 16 18 C 0.09 1.19 6.58 -82.38 -0.54 0.65 16 19 C -0.14 -1.70 10.81 -39.41 -0.43 -2.13 16 20 C -0.20 -1.89 10.83 -39.90 -0.43 -2.33 16 21 C 0.00 -0.01 11.93 -16.65 -0.20 -0.20 16 22 N -0.56 -5.24 3.88 -9.51 -0.04 -5.27 16 23 H 0.41 3.02 5.07 -40.82 -0.21 2.81 16 24 N -0.48 -7.39 2.06 -114.76 -0.24 -7.62 16 25 C 0.12 1.35 5.43 -4.04 -0.02 1.32 16 26 C -0.14 -1.54 1.26 -153.43 -0.19 -1.73 16 27 C -0.12 -1.75 8.37 37.15 0.31 -1.44 16 28 C 0.04 0.43 7.60 37.61 0.29 0.72 16 29 O -0.37 -4.42 12.37 -35.23 -0.44 -4.85 16 30 C 0.05 0.44 8.36 37.61 0.31 0.75 16 31 H 0.05 1.12 5.72 -51.93 -0.30 0.82 16 32 H 0.02 0.52 6.57 -51.93 -0.34 0.18 16 33 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.04 0.60 6.50 -51.93 -0.34 0.26 16 36 H 0.10 1.77 6.63 -51.93 -0.34 1.42 16 37 H 0.03 0.61 6.85 -51.93 -0.36 0.25 16 38 H 0.15 1.87 8.06 -52.49 -0.42 1.44 16 39 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.17 0.79 8.06 -52.49 -0.42 0.36 16 41 H 0.11 1.18 6.29 -51.93 -0.33 0.85 16 42 H 0.07 0.59 5.23 -51.93 -0.27 0.31 16 43 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 45 H 0.06 1.06 7.11 -51.93 -0.37 0.69 16 46 H 0.08 0.66 4.89 -51.93 -0.25 0.41 16 47 H 0.09 1.13 8.10 -51.93 -0.42 0.71 16 48 H 0.10 0.88 8.10 -51.92 -0.42 0.46 16 49 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 LS Contribution 378.21 15.07 5.70 5.70 Total: -1.00 -31.25 378.21 -9.88 -41.12 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.72 Total: 6.19 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -3.61 Total: -5.52 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: 0.21 Total: -58.08 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.44 Total: -4.85 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.25 -9.88 -41.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460396893.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.760 kcal (2) G-P(sol) polarization free energy of solvation -31.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds