Wall clock time and date at job start Wed Apr 1 2020 04:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.46768 * 2 1 4 4 C 1.50700 * 109.46763 * 119.99481 * 2 1 3 5 5 H 1.07998 * 119.99783 * 119.99860 * 4 2 1 6 6 C 1.37881 * 120.00330 * 300.00224 * 4 2 1 7 7 N 1.31510 * 119.99586 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00071 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46889 * 59.99990 * 8 6 4 10 10 H 1.48492 * 109.46850 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47061 * 300.00205 * 8 6 4 12 12 N 1.46898 * 109.47150 * 239.99475 * 2 1 3 13 13 C 1.46899 * 110.99954 * 306.05031 * 12 2 1 14 14 C 1.38494 * 110.99901 * 70.00290 * 12 2 1 15 15 N 1.31299 * 126.35015 * 341.19070 * 14 12 2 16 16 N 1.28504 * 110.14936 * 180.02562 * 15 14 12 17 17 C 1.31484 * 109.93042 * 359.97438 * 16 15 14 18 18 C 1.47225 * 126.50339 * 179.97438 * 17 16 15 19 19 C 1.36519 * 126.09323 * 18.75285 * 18 17 16 20 20 C 1.40347 * 107.32803 * 179.97438 * 19 18 17 21 21 C 1.35106 * 107.74921 * 0.02562 * 20 19 18 22 22 N 1.36358 * 108.53141 * 359.72931 * 21 20 19 23 23 H 0.97003 * 125.70749 * 180.30121 * 22 21 20 24 24 N 1.36617 * 126.35513 * 161.21607 * 14 12 2 25 25 C 1.46501 * 127.17939 * 0.23927 * 24 14 12 26 26 C 1.53005 * 109.47009 * 263.73130 * 25 24 14 27 27 C 1.52993 * 112.99640 * 43.88237 * 26 25 24 28 28 C 1.54039 * 113.81582 * 271.89148 * 26 25 24 29 29 O 1.44179 * 85.51735 * 223.19401 * 28 26 25 30 30 C 1.44179 * 93.33684 * 24.19674 * 29 28 26 31 31 H 1.09000 * 109.46699 * 60.00407 * 1 2 3 32 32 H 1.08997 * 109.46768 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47357 * 300.00408 * 1 2 3 34 34 H 0.96999 * 119.99935 * 180.02562 * 7 6 4 35 35 H 1.09004 * 109.46883 * 190.84510 * 13 12 2 36 36 H 1.08996 * 109.47164 * 310.83582 * 13 12 2 37 37 H 1.08997 * 109.47473 * 70.84425 * 13 12 2 38 38 H 1.07999 * 126.33763 * 0.02562 * 19 18 17 39 39 H 1.07998 * 126.12461 * 180.02562 * 20 19 18 40 40 H 1.07991 * 125.73434 * 180.02562 * 21 20 19 41 41 H 1.08998 * 109.47413 * 23.73049 * 25 24 14 42 42 H 1.09000 * 109.46806 * 143.73819 * 25 24 14 43 43 H 1.08998 * 109.47573 * 60.00235 * 27 26 25 44 44 H 1.09005 * 109.46991 * 180.02562 * 27 26 25 45 45 H 1.09000 * 109.47616 * 299.99478 * 27 26 25 46 46 H 1.08993 * 113.86359 * 337.34501 * 28 26 25 47 47 H 1.09004 * 113.85595 * 109.04813 * 28 26 25 48 48 H 1.09007 * 113.86436 * 221.65752 * 30 29 28 49 49 H 1.09001 * 113.86571 * 89.95537 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6033 8 14 2.3224 -1.1193 4.0081 9 1 3.8074 -1.1187 4.0079 10 1 1.8277 -0.4189 5.2204 11 1 1.8280 -2.5196 4.0083 12 7 2.0198 -0.6926 -1.1994 13 6 1.4343 -2.0355 -1.3076 14 6 1.7683 0.0519 -2.3398 15 7 0.8978 1.0279 -2.4558 16 7 0.9206 1.5018 -3.6500 17 6 1.8100 0.8560 -4.3716 18 6 2.1342 1.1004 -5.7868 19 6 1.8509 2.2342 -6.4924 20 6 2.3324 2.0458 -7.7972 21 6 2.8906 0.8168 -7.8567 22 7 2.7803 0.2309 -6.6304 23 1 3.1027 -0.6530 -6.3942 24 7 2.3797 -0.0934 -3.5529 25 6 3.4201 -1.0611 -3.9097 26 6 4.7949 -0.4014 -3.7842 27 6 4.9425 0.4353 -2.5119 28 6 5.2576 0.3204 -5.0640 29 8 6.5405 -0.2846 -4.8057 30 6 5.9715 -1.3630 -4.0364 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 0.7086 1.1614 3.4843 35 1 1.9517 -2.5957 -2.0865 36 1 1.5394 -2.5556 -0.3555 37 1 0.3776 -1.9519 -1.5613 38 1 1.3499 3.1138 -6.1161 39 1 2.2682 2.7559 -8.6083 40 1 3.3514 0.3749 -8.7277 41 1 3.3654 -1.9177 -3.2379 42 1 3.2694 -1.3944 -4.9365 43 1 4.8004 -0.2022 -1.6393 44 1 5.9385 0.8771 -2.4811 45 1 4.1938 1.2275 -2.5090 46 1 4.7749 -0.0398 -5.9724 47 1 5.2579 1.4073 -4.9814 48 1 6.5381 -1.6114 -3.1389 49 1 5.7069 -2.2373 -4.6312 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460396893.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:25 Heat of formation + Delta-G solvation = 133.996188 kcal Electronic energy + Delta-G solvation = -32416.864515 eV Core-core repulsion = 28383.432476 eV Total energy + Delta-G solvation = -4033.432040 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.03095 -42.02619 -41.58970 -39.03615 -36.59244 -34.83365 -32.92552 -32.19153 -32.02484 -30.59217 -29.18338 -28.56247 -27.65899 -27.27172 -26.92027 -26.37807 -23.74587 -23.24976 -21.74608 -21.54823 -20.68464 -20.24029 -18.94151 -18.41738 -17.93359 -17.67754 -17.17653 -17.07864 -16.82095 -16.42415 -16.28791 -15.70154 -15.28600 -15.11995 -14.97792 -14.72988 -14.48650 -14.39427 -14.00578 -13.62313 -13.50111 -13.45523 -13.14961 -13.11795 -13.04443 -13.03438 -12.91637 -12.68937 -12.57785 -12.41339 -12.19594 -12.06131 -11.99755 -11.72643 -11.53500 -11.05032 -10.92426 -10.78465 -10.67282 -10.49133 -9.85895 -9.51011 -8.65572 -8.10635 -6.25641 0.27027 1.09125 1.35668 1.45639 1.47465 1.55004 1.87029 2.02358 2.30069 2.41658 2.55673 2.85660 2.99247 3.18942 3.33666 3.40265 3.47238 3.81006 3.97277 4.00108 4.15938 4.17106 4.22901 4.43957 4.47637 4.49360 4.51479 4.58942 4.64508 4.66917 4.70479 4.74186 4.77948 4.88727 4.93824 4.99882 5.06644 5.12614 5.15364 5.19875 5.26199 5.36326 5.41739 5.60775 5.62410 5.80343 5.90847 5.98796 6.06528 6.22984 6.53416 6.58333 6.83967 7.43290 7.76927 8.95498 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.014679 B = 0.003697 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.967565 B = 7572.760690 C = 8800.952962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.245 3.755 3 H -0.004 1.004 4 C -0.519 4.519 5 H 0.073 0.927 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.967 3.033 9 H -0.270 1.270 10 H -0.291 1.291 11 H -0.264 1.264 12 N -0.450 5.450 13 C 0.037 3.963 14 C 0.380 3.620 15 N -0.356 5.356 16 N -0.313 5.313 17 C 0.242 3.758 18 C 0.054 3.946 19 C -0.144 4.144 20 C -0.213 4.213 21 C 0.038 3.962 22 N -0.549 5.549 23 H 0.420 0.580 24 N -0.471 5.471 25 C 0.114 3.886 26 C -0.143 4.143 27 C -0.115 4.115 28 C 0.049 3.951 29 O -0.394 6.394 30 C 0.058 3.942 31 H 0.040 0.960 32 H 0.031 0.969 33 H 0.058 0.942 34 H 0.261 0.739 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.022 0.978 38 H 0.128 0.872 39 H 0.162 0.838 40 H 0.217 0.783 41 H 0.121 0.879 42 H 0.113 0.887 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.021 0.979 46 H 0.104 0.896 47 H 0.072 0.928 48 H 0.103 0.897 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.353 -8.793 -22.654 26.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.139 3.861 3 H 0.014 0.986 4 C -0.558 4.558 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.792 3.208 9 H -0.196 1.196 10 H -0.217 1.217 11 H -0.189 1.189 12 N -0.174 5.174 13 C -0.109 4.109 14 C 0.023 3.977 15 N -0.200 5.200 16 N -0.152 5.152 17 C -0.024 4.024 18 C -0.059 4.059 19 C -0.173 4.173 20 C -0.236 4.236 21 C -0.095 4.095 22 N -0.150 5.150 23 H 0.262 0.738 24 N -0.166 5.166 25 C -0.008 4.008 26 C -0.144 4.144 27 C -0.172 4.172 28 C -0.028 4.028 29 O -0.313 6.313 30 C -0.018 4.018 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.040 0.960 38 H 0.146 0.854 39 H 0.180 0.820 40 H 0.234 0.766 41 H 0.139 0.861 42 H 0.131 0.869 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.041 0.959 46 H 0.121 0.879 47 H 0.091 0.909 48 H 0.121 0.879 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.021 -7.873 -22.045 25.087 hybrid contribution -0.099 -0.691 1.433 1.594 sum 8.923 -8.564 -20.612 24.038 Atomic orbital electron populations 1.22286 0.99308 0.99089 1.01144 1.18889 0.90832 0.92053 0.84314 0.98630 1.21250 1.31563 1.13075 0.89865 0.90889 1.25764 0.95135 0.95659 1.02132 1.70082 1.37380 1.24201 1.24224 0.85481 0.78680 0.78739 0.77922 1.19552 1.21675 1.18891 1.59251 1.56652 1.03509 0.97958 1.22442 0.96768 0.87484 1.04246 1.22947 0.91505 0.96839 0.86381 1.74751 1.19860 1.13736 1.11629 1.74315 1.18430 1.23810 0.98678 1.21972 0.96488 0.91608 0.92348 1.16705 1.09642 0.94457 0.85064 1.21147 1.04098 0.96946 0.95065 1.21152 1.06732 0.98916 0.96836 1.22717 1.04026 0.94595 0.88193 1.42416 1.46694 1.16162 1.09777 0.73812 1.46357 1.31958 1.29515 1.08759 1.22377 0.84004 0.90956 1.03495 1.24097 0.94761 0.98251 0.97253 1.21334 1.00710 0.98913 0.96259 1.24314 0.83074 0.99130 0.96291 1.89698 1.26652 1.41157 1.73801 1.24277 0.89986 0.91020 0.96541 0.94094 0.94966 0.92305 0.92955 0.89395 0.89102 0.95950 0.85370 0.82027 0.76614 0.86052 0.86897 0.91469 0.91721 0.95948 0.87882 0.90928 0.87910 0.86013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.31 8.20 71.99 0.59 -7.72 16 2 C 0.25 12.66 2.04 44.17 0.09 12.75 16 3 H 0.00 -0.26 8.02 -2.39 -0.02 -0.28 16 4 C -0.52 -27.36 7.81 25.60 0.20 -27.16 16 5 H 0.07 3.62 7.19 -2.91 -0.02 3.60 16 6 C 0.01 0.67 5.30 84.66 0.45 1.12 16 7 N -0.92 -53.89 11.32 21.45 0.24 -53.64 16 8 Si 0.97 42.45 29.54 68.60 2.03 44.48 16 9 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 10 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 12 N -0.45 -18.48 4.69 -710.86 -3.33 -21.81 16 13 C 0.04 1.27 8.38 127.69 1.07 2.34 16 14 C 0.38 15.31 5.63 260.04 1.46 16.78 16 15 N -0.36 -16.81 9.21 -57.91 -0.53 -17.34 16 16 N -0.31 -13.40 12.23 -51.08 -0.62 -14.03 16 17 C 0.24 8.02 7.90 135.92 1.07 9.09 16 18 C 0.05 1.33 6.58 40.25 0.27 1.60 16 19 C -0.14 -3.49 10.81 22.38 0.24 -3.25 16 20 C -0.21 -3.39 10.83 22.06 0.24 -3.15 16 21 C 0.04 0.40 11.93 83.27 0.99 1.40 16 22 N -0.55 -7.89 3.88 -184.00 -0.71 -8.60 16 23 H 0.42 3.87 5.07 -92.71 -0.47 3.40 16 24 N -0.47 -14.31 2.06 -516.99 -1.06 -15.37 16 25 C 0.11 2.17 5.43 86.38 0.47 2.64 16 26 C -0.14 -2.84 1.26 -51.48 -0.06 -2.90 16 27 C -0.11 -3.34 8.37 71.98 0.60 -2.73 16 28 C 0.05 0.90 7.60 72.28 0.55 1.45 16 29 O -0.39 -8.06 12.37 -148.98 -1.84 -9.90 16 30 C 0.06 0.84 8.36 72.27 0.60 1.45 16 31 H 0.04 2.15 5.72 -2.39 -0.01 2.14 16 32 H 0.03 1.55 6.57 -2.39 -0.02 1.54 16 33 H 0.06 3.42 6.07 -2.39 -0.01 3.40 16 34 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 35 H 0.09 2.17 6.50 -2.39 -0.02 2.16 16 36 H 0.09 3.21 6.63 -2.39 -0.02 3.19 16 37 H 0.02 0.80 6.85 -2.39 -0.02 0.78 16 38 H 0.13 3.47 8.06 -2.91 -0.02 3.45 16 39 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 40 H 0.22 0.31 8.06 -2.91 -0.02 0.28 16 41 H 0.12 2.12 6.29 -2.39 -0.02 2.10 16 42 H 0.11 1.24 5.23 -2.39 -0.01 1.23 16 43 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.06 1.79 8.09 -2.38 -0.02 1.78 16 45 H 0.02 0.80 7.11 -2.39 -0.02 0.78 16 46 H 0.10 1.29 4.89 -2.39 -0.01 1.28 16 47 H 0.07 1.68 8.10 -2.39 -0.02 1.66 16 48 H 0.10 1.46 8.10 -2.38 -0.02 1.45 16 49 H 0.12 0.82 8.10 -2.39 -0.02 0.81 16 Total: -1.00 -76.71 378.21 3.52 -73.18 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.53 Total: 19.34 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 8.84 Total: 3.69 kcal Atomic # 7 Polarization: -124.77 SS G_CDS: -6.02 Total: -130.79 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -1.84 Total: -9.90 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -76.71 3.52 -73.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460396893.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.180 kcal (2) G-P(sol) polarization free energy of solvation -76.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds