Wall clock time and date at job start Wed Apr 1 2020 04:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99915 * 2 1 4 4 C 1.52996 * 109.47403 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47533 * 175.04394 * 4 3 2 6 6 C 1.36741 * 127.13295 * 84.27321 * 5 4 3 7 7 C 1.50693 * 126.34809 * 359.94310 * 6 5 4 8 8 C 1.50703 * 109.47117 * 90.00405 * 7 6 5 9 9 C 1.38651 * 120.78507 * 269.71900 * 8 7 6 10 10 C 1.38204 * 119.15896 * 179.79859 * 9 8 7 11 11 N 1.31868 * 120.76529 * 0.48809 * 10 9 8 12 12 C 1.31873 * 121.72610 * 359.73790 * 11 10 9 13 13 C 1.38205 * 120.76022 * 0.02676 * 12 11 10 14 14 N 1.30300 * 107.30282 * 179.97438 * 6 5 4 15 15 N 1.28527 * 110.05321 * 359.97438 * 14 6 5 16 16 C 1.31220 * 109.86037 * 359.74911 * 15 14 6 17 17 N 1.38580 * 126.47207 * 180.25307 * 16 15 14 18 18 C 1.46895 * 111.00445 * 260.83292 * 17 16 15 19 19 C 1.46899 * 110.99898 * 24.78835 * 17 16 15 20 20 H 1.08999 * 109.47296 * 299.99409 * 19 17 16 21 21 C 1.52999 * 109.47343 * 59.99887 * 19 17 16 22 22 C 1.50705 * 109.47088 * 179.97438 * 19 17 16 23 23 H 1.07997 * 120.00008 * 0.02562 * 22 19 17 24 24 C 1.37881 * 119.99711 * 179.97438 * 22 19 17 25 25 N 1.31504 * 120.00547 * 0.02562 * 24 22 19 26 26 Si 1.86807 * 119.99393 * 179.97438 * 24 22 19 27 27 H 1.48498 * 109.47133 * 60.00333 * 26 24 22 28 28 H 1.48501 * 109.46448 * 180.02562 * 26 24 22 29 29 H 1.48494 * 109.47095 * 299.99955 * 26 24 22 30 30 H 1.09001 * 109.47464 * 60.00128 * 1 2 3 31 31 H 1.09005 * 109.46624 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47114 * 299.99860 * 1 2 3 33 33 H 1.09002 * 109.47396 * 300.00081 * 3 2 1 34 34 H 1.09001 * 109.47236 * 59.99837 * 3 2 1 35 35 H 1.08997 * 109.47704 * 295.04991 * 4 3 2 36 36 H 1.09002 * 109.47035 * 55.04397 * 4 3 2 37 37 H 1.08999 * 109.47302 * 210.00195 * 7 6 5 38 38 H 1.08997 * 109.47400 * 329.99895 * 7 6 5 39 39 H 1.08000 * 120.42232 * 359.97438 * 9 8 7 40 40 H 1.08003 * 119.62044 * 180.20524 * 10 9 8 41 41 H 1.07998 * 119.61924 * 180.02562 * 12 11 10 42 42 H 1.08007 * 120.41489 * 179.97438 * 13 12 11 43 43 H 1.09003 * 109.47195 * 54.82626 * 18 17 16 44 44 H 1.08997 * 109.47453 * 174.83271 * 18 17 16 45 45 H 1.09004 * 109.47000 * 294.83294 * 18 17 16 46 46 H 1.09002 * 109.47552 * 180.02562 * 21 19 17 47 47 H 1.09005 * 109.47062 * 300.00025 * 21 19 17 48 48 H 1.08999 * 109.47315 * 59.99534 * 21 19 17 49 49 H 0.96998 * 120.00402 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1308 2.5180 -0.1200 6 6 4.3747 3.4065 0.8904 7 6 4.0782 3.1991 2.3532 8 6 5.2715 2.5680 3.0231 9 6 5.3943 1.1892 3.1019 10 6 6.5048 0.6462 3.7201 11 7 7.4351 1.4233 4.2394 12 6 7.3491 2.7381 4.1870 13 6 6.2697 3.3523 3.5804 14 7 4.9105 4.4661 0.3537 15 7 5.0213 4.3084 -0.9170 16 6 4.5632 3.1279 -1.2614 17 7 4.5228 2.6017 -2.5427 18 6 3.1847 2.7492 -3.1305 19 6 5.5446 3.2198 -3.3982 20 1 5.3688 4.2940 -3.4559 21 6 6.9310 2.9610 -2.8050 22 6 5.4707 2.6233 -4.7801 23 1 4.7377 1.8615 -5.0010 24 6 6.3382 3.0508 -5.7628 25 7 7.2304 3.9788 -5.4941 26 14 6.2469 2.3109 -7.4757 27 1 4.9012 2.5605 -8.0517 28 1 7.2798 2.9359 -8.3404 29 1 6.4878 0.8477 -7.3962 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 1.6885 1.8464 0.8900 35 1 3.8637 0.7222 0.9301 36 1 3.8508 0.5693 -0.8432 37 1 3.8653 4.1604 2.8207 38 1 3.2134 2.5442 2.4593 39 1 4.6333 0.5475 2.6829 40 1 6.6096 -0.4269 3.7826 41 1 8.1310 3.3420 4.6232 42 1 6.2047 4.4297 3.5411 43 1 2.8854 3.7967 -3.0944 44 1 3.2039 2.4122 -4.1669 45 1 2.4717 2.1480 -2.5662 46 1 7.6892 3.4200 -3.4395 47 1 6.9848 3.3921 -1.8053 48 1 7.1068 1.8868 -2.7473 49 1 7.8410 4.2793 -6.1854 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460591892.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:27 Heat of formation + Delta-G solvation = 70.219921 kcal Electronic energy + Delta-G solvation = -31192.724325 eV Core-core repulsion = 27156.526739 eV Total energy + Delta-G solvation = -4036.197586 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.06546 -41.06026 -39.08920 -38.89101 -36.42634 -35.48110 -34.69779 -32.13994 -31.59162 -31.25664 -30.89361 -28.68463 -27.30387 -27.22211 -26.08741 -24.71035 -24.41107 -23.79302 -23.27790 -21.50205 -21.17097 -18.70009 -18.22105 -17.72626 -17.48171 -17.36817 -17.17733 -17.11797 -16.63955 -16.54186 -16.38445 -15.86974 -15.80284 -15.35716 -14.96163 -14.73490 -14.54858 -14.37347 -14.20954 -13.91357 -13.72461 -13.56979 -13.37156 -13.03152 -12.85472 -12.73890 -12.68647 -12.56015 -12.36142 -12.29624 -12.23047 -12.11156 -12.07082 -11.53220 -11.16573 -11.12666 -10.72469 -10.67608 -10.58717 -10.50558 -10.26812 -10.08189 -9.25871 -8.13800 -6.29147 0.15975 0.21091 0.74516 1.15703 1.45236 1.47505 1.55079 1.82021 2.39637 2.64831 2.80516 3.08488 3.18583 3.41292 3.51107 3.57260 3.64334 3.70466 3.80854 3.97735 4.06005 4.12264 4.15940 4.24463 4.34563 4.41471 4.49604 4.51367 4.56230 4.59140 4.65028 4.72721 4.75507 4.78349 4.88238 4.90114 4.91661 4.92901 4.98051 5.01280 5.12319 5.34921 5.39557 5.51765 5.62323 5.76533 5.86066 5.95128 6.05170 6.13611 6.56440 6.80609 7.02321 7.39801 7.77548 8.92970 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.009709 B = 0.003565 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.186653 B = 7851.933657 C = 9598.634338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.055 3.945 4 C 0.107 3.893 5 N -0.465 5.465 6 C 0.183 3.817 7 C 0.017 3.983 8 C -0.048 4.048 9 C -0.166 4.166 10 C 0.086 3.914 11 N -0.513 5.513 12 C 0.085 3.915 13 C -0.162 4.162 14 N -0.317 5.317 15 N -0.361 5.361 16 C 0.371 3.629 17 N -0.462 5.462 18 C 0.043 3.957 19 C 0.242 3.758 20 H -0.019 1.019 21 C -0.114 4.114 22 C -0.528 4.528 23 H 0.075 0.925 24 C 0.014 3.986 25 N -0.919 5.919 26 Si 0.969 3.031 27 H -0.265 1.265 28 H -0.288 1.288 29 H -0.269 1.269 30 H 0.044 0.956 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.125 0.875 36 H 0.099 0.901 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.158 0.842 40 H 0.177 0.823 41 H 0.172 0.828 42 H 0.148 0.852 43 H 0.016 0.984 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.064 0.936 47 H 0.011 0.989 48 H 0.026 0.974 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.801 -8.480 18.970 24.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C -0.022 4.022 4 C -0.015 4.015 5 N -0.161 5.161 6 C -0.086 4.086 7 C -0.022 4.022 8 C -0.057 4.057 9 C -0.186 4.186 10 C -0.070 4.070 11 N -0.223 5.223 12 C -0.071 4.071 13 C -0.182 4.182 14 N -0.156 5.156 15 N -0.204 5.204 16 C 0.014 3.986 17 N -0.187 5.187 18 C -0.103 4.103 19 C 0.136 3.864 20 H -0.002 1.002 21 C -0.172 4.172 22 C -0.566 4.566 23 H 0.093 0.907 24 C -0.186 4.186 25 N -0.558 5.558 26 Si 0.793 3.207 27 H -0.190 1.190 28 H -0.214 1.214 29 H -0.193 1.193 30 H 0.062 0.938 31 H 0.122 0.878 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.143 0.857 36 H 0.117 0.883 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.176 0.824 40 H 0.194 0.806 41 H 0.189 0.811 42 H 0.165 0.835 43 H 0.034 0.966 44 H 0.111 0.889 45 H 0.100 0.900 46 H 0.083 0.917 47 H 0.030 0.970 48 H 0.046 0.954 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.138 -8.061 19.162 24.072 hybrid contribution -0.944 0.253 -1.635 1.905 sum -13.081 -7.807 17.527 23.222 Atomic orbital electron populations 1.22995 0.78612 1.04331 1.01060 1.87798 1.21994 1.26299 1.95639 1.22698 0.91668 0.85954 1.01908 1.21792 0.93090 0.79686 1.06921 1.46163 1.48015 1.16338 1.05605 1.25013 1.02409 0.87533 0.93634 1.19148 0.96313 1.05161 0.81556 1.20189 0.95927 0.94123 0.95486 1.22342 1.00537 0.94929 1.00749 1.23190 0.89394 1.01222 0.93198 1.67683 1.29360 1.06838 1.18406 1.23111 0.97254 0.90819 0.95905 1.22324 0.94797 1.02388 0.98708 1.73876 1.17766 1.22695 1.01215 1.74723 1.24533 1.14609 1.06521 1.22877 0.98275 0.88364 0.89075 1.59054 1.07933 1.54735 0.96987 1.22424 0.86588 0.99248 1.02076 1.18932 0.86285 0.91345 0.89845 1.00164 1.21571 1.00255 0.98266 0.97102 1.21324 1.18642 1.22684 0.93961 0.90722 1.25785 0.94579 0.95183 1.03016 1.70060 1.20495 1.30281 1.34931 0.85449 0.78045 0.78626 0.78544 1.19020 1.21351 1.19349 0.93764 0.87820 0.92310 0.93539 0.90383 0.85693 0.88255 0.85304 0.85336 0.82427 0.80595 0.81124 0.83457 0.96568 0.88923 0.89972 0.91685 0.97035 0.95450 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.40 -6.89 10.70 -148.98 -1.59 -8.48 16 3 C 0.06 0.97 6.25 71.98 0.45 1.42 16 4 C 0.11 2.31 6.22 86.38 0.54 2.85 16 5 N -0.47 -13.96 2.81 -514.86 -1.45 -15.40 16 6 C 0.18 5.25 7.30 137.63 1.01 6.25 16 7 C 0.02 0.29 5.71 29.10 0.17 0.46 16 8 C -0.05 -0.91 5.15 -19.67 -0.10 -1.01 16 9 C -0.17 -2.81 9.63 22.36 0.22 -2.60 16 10 C 0.09 1.67 11.18 84.68 0.95 2.61 16 11 N -0.51 -12.14 10.36 -195.84 -2.03 -14.17 16 12 C 0.09 1.82 11.18 84.68 0.95 2.77 16 13 C -0.16 -3.31 9.82 22.36 0.22 -3.09 16 14 N -0.32 -12.38 12.18 -49.54 -0.60 -12.98 16 15 N -0.36 -16.68 10.28 -58.01 -0.60 -17.28 16 16 C 0.37 15.19 5.91 260.11 1.54 16.72 16 17 N -0.46 -20.08 4.61 -711.01 -3.28 -23.36 16 18 C 0.04 1.61 9.36 127.69 1.19 2.81 16 19 C 0.24 12.83 1.74 44.17 0.08 12.91 16 20 H -0.02 -1.19 7.89 -2.39 -0.02 -1.21 16 21 C -0.11 -6.17 8.81 71.98 0.63 -5.54 16 22 C -0.53 -28.45 7.81 25.60 0.20 -28.25 16 23 H 0.07 3.80 6.44 -2.91 -0.02 3.78 16 24 C 0.01 0.77 5.30 84.66 0.45 1.21 16 25 N -0.92 -53.96 11.32 21.45 0.24 -53.72 16 26 Si 0.97 42.73 29.54 68.60 2.03 44.76 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 28 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 29 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 30 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.05 0.95 6.17 -2.39 -0.01 0.93 16 34 H 0.08 1.00 7.75 -2.39 -0.02 0.98 16 35 H 0.13 1.93 6.15 -2.39 -0.01 1.92 16 36 H 0.10 2.53 8.09 -2.39 -0.02 2.51 16 37 H 0.13 1.81 8.10 -2.39 -0.02 1.79 16 38 H 0.13 1.25 7.54 -2.39 -0.02 1.23 16 39 H 0.16 1.74 6.36 -2.91 -0.02 1.72 16 40 H 0.18 2.42 8.06 -2.91 -0.02 2.40 16 41 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 42 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 43 H 0.02 0.62 8.11 -2.39 -0.02 0.60 16 44 H 0.09 3.55 5.96 -2.39 -0.01 3.54 16 45 H 0.08 2.41 6.16 -2.39 -0.01 2.40 16 46 H 0.06 3.84 6.07 -2.39 -0.01 3.83 16 47 H 0.01 0.59 6.40 -2.38 -0.02 0.57 16 48 H 0.03 1.41 8.14 -2.39 -0.02 1.40 16 49 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -76.56 397.75 3.41 -73.15 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.96 Total: 16.44 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 9.73 Total: 11.05 kcal Atomic # 7 Polarization: -129.21 SS G_CDS: -7.71 Total: -136.92 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -1.59 Total: -8.48 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -76.56 3.41 -73.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460591892.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.369 kcal (2) G-P(sol) polarization free energy of solvation -76.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds