Wall clock time and date at job start Wed Apr 1 2020 03:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47271 * 2 1 4 4 N 1.46504 * 109.47344 * 179.97438 * 3 2 1 5 5 C 1.34778 * 119.99890 * 262.78710 * 4 3 2 6 6 O 1.21709 * 119.99607 * 174.30428 * 5 4 3 7 7 C 1.46600 * 119.99861 * 354.30858 * 5 4 3 8 8 C 1.41149 * 126.56410 * 27.27777 * 7 5 4 9 9 N 1.30524 * 108.27745 * 179.85237 * 8 7 5 10 10 N 1.39995 * 109.36484 * 0.41399 * 9 8 7 11 11 C 1.38454 * 143.84952 * 179.73645 * 10 9 8 12 12 C 1.33074 * 108.42281 * 179.97438 * 11 10 9 13 13 N 1.38061 * 108.13602 * 0.02562 * 12 11 10 14 14 H 0.97001 * 126.16646 * 179.97438 * 13 12 11 15 15 C 1.35010 * 108.27470 * 359.73408 * 10 9 8 16 16 C 1.46497 * 119.99937 * 82.78418 * 4 3 2 17 17 C 1.53039 * 109.46108 * 120.00125 * 16 4 3 18 18 C 1.53189 * 109.31436 * 181.38470 * 17 16 4 19 19 N 1.46925 * 108.89207 * 305.29382 * 18 17 16 20 20 C 1.36933 * 120.63021 * 233.67099 * 19 18 17 21 21 H 1.08000 * 119.99948 * 38.10501 * 20 19 18 22 22 C 1.38814 * 120.00105 * 218.09984 * 20 19 18 23 23 N 1.31617 * 120.00164 * 16.40371 * 22 20 19 24 24 Si 1.86807 * 120.00079 * 196.39788 * 22 20 19 25 25 H 1.48496 * 109.46791 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46855 * 119.99966 * 24 22 20 27 27 H 1.48499 * 109.47121 * 240.00255 * 24 22 20 28 28 C 1.47204 * 118.55432 * 53.54221 * 19 18 17 29 29 C 1.53043 * 109.46050 * 240.07205 * 16 4 3 30 30 H 1.08996 * 109.47352 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47105 * 300.00051 * 1 2 3 32 32 H 1.09000 * 109.46977 * 59.99974 * 1 2 3 33 33 H 1.08994 * 109.46950 * 239.99164 * 2 1 3 34 34 H 1.09001 * 109.46546 * 119.99708 * 2 1 3 35 35 H 1.09000 * 109.47182 * 59.99438 * 3 2 1 36 36 H 1.09000 * 109.47141 * 299.99925 * 3 2 1 37 37 H 1.08005 * 125.86474 * 0.02562 * 8 7 5 38 38 H 1.07998 * 125.78442 * 359.96029 * 11 10 9 39 39 H 1.07998 * 125.93027 * 180.02562 * 12 11 10 40 40 H 1.09003 * 109.44814 * 0.03578 * 16 4 3 41 41 H 1.08999 * 109.49484 * 61.43150 * 17 16 4 42 42 H 1.09003 * 109.49831 * 301.34258 * 17 16 4 43 43 H 1.08997 * 109.58390 * 65.15242 * 18 17 16 44 44 H 1.08997 * 109.58606 * 185.44007 * 18 17 16 45 45 H 0.96999 * 119.99979 * 180.02562 * 23 22 20 46 46 H 1.09006 * 109.53521 * 186.66804 * 28 19 18 47 47 H 1.08996 * 109.67891 * 66.36822 * 28 19 18 48 48 H 1.09002 * 109.49495 * 298.56572 * 29 16 4 49 49 H 1.09002 * 109.49753 * 58.63065 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1785 1.5892 1.1589 6 8 5.3911 1.4857 1.1751 7 6 3.4503 1.8733 2.3991 8 6 2.1178 1.5126 2.6933 9 7 1.8337 1.9392 3.8937 10 7 2.9478 2.5971 4.4283 11 6 3.4195 3.2738 5.5403 12 6 4.6774 3.6401 5.3075 13 7 5.0256 3.2033 4.0449 14 1 5.8841 3.3304 3.6117 15 6 3.9410 2.5586 3.5145 16 6 4.2381 1.2829 -1.2577 17 6 5.1180 2.5125 -1.4947 18 6 5.8564 2.3577 -2.8279 19 7 6.5916 1.0857 -2.8197 20 6 7.9334 1.0536 -3.0912 21 1 8.5767 1.8414 -2.7282 22 6 8.4666 0.0083 -3.8328 23 7 7.6740 -0.7667 -4.5422 24 14 10.3094 -0.2982 -3.8240 25 1 10.9738 0.7048 -2.9537 26 1 10.5817 -1.6622 -3.3038 27 1 10.8372 -0.1814 -5.2071 28 6 5.8549 -0.1508 -2.5107 29 6 5.1165 0.0320 -1.1810 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6768 1.9563 -0.8900 37 1 1.4489 0.9735 2.0387 38 1 2.8610 3.4711 6.4434 39 1 5.3153 4.1844 5.9881 40 1 3.5298 1.1794 -2.0797 41 1 5.8428 2.6025 -0.6856 42 1 4.4941 3.4058 -1.5258 43 1 5.1367 2.3586 -3.6464 44 1 6.5564 3.1834 -2.9558 45 1 8.0466 -1.4973 -5.0601 46 1 6.5557 -0.9816 -2.4283 47 1 5.1354 -0.3570 -3.3030 48 1 5.8414 0.1454 -0.3749 49 1 4.4916 -0.8401 -0.9885 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479996771.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:07 Heat of formation + Delta-G solvation = 136.274431 kcal Electronic energy + Delta-G solvation = -31554.592440 eV Core-core repulsion = 27521.259192 eV Total energy + Delta-G solvation = -4033.333248 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.27488 -39.99213 -38.22096 -36.74967 -35.94441 -33.41578 -32.76759 -31.90657 -30.13413 -29.80297 -29.61504 -28.42016 -26.19643 -24.95183 -23.10549 -22.78540 -22.11971 -21.79695 -21.55745 -21.23825 -19.64125 -19.04627 -17.49315 -16.77059 -16.44015 -16.37011 -16.06917 -15.44779 -15.05987 -14.76030 -14.61307 -14.45231 -14.14295 -13.68498 -13.56785 -13.41249 -13.21525 -13.03757 -12.91225 -12.80913 -12.52253 -12.36189 -12.03906 -11.80450 -11.38959 -11.25202 -11.13016 -11.01940 -10.93057 -10.81706 -10.67998 -10.59573 -10.19729 -10.05494 -9.98862 -9.62503 -9.41424 -9.32227 -9.04467 -8.39599 -8.16770 -7.73320 -6.41596 -5.70034 -3.21132 1.37902 1.75581 1.83513 2.27292 2.60525 3.31117 3.42563 3.50067 3.53700 3.57893 4.15372 4.49191 4.57528 4.64348 4.82173 4.89611 4.95962 5.04985 5.13219 5.27228 5.36828 5.40850 5.46073 5.48199 5.55989 5.57200 5.64542 5.74987 5.82278 5.92598 5.98175 5.99495 6.25847 6.27317 6.31272 6.46848 6.51559 6.63709 6.65273 6.75238 6.86769 6.87632 6.95743 7.17891 7.24472 7.45357 7.53673 7.65061 7.90018 7.92847 8.61908 8.68986 9.31848 9.92816 10.57683 11.37115 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.013051 B = 0.003229 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.882161 B = 8670.444943 C =10198.178868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.153 4.153 3 C 0.090 3.910 4 N -0.605 5.605 5 C 0.598 3.402 6 O -0.541 6.541 7 C -0.326 4.326 8 C 0.106 3.894 9 N -0.305 5.305 10 N -0.308 5.308 11 C -0.002 4.002 12 C 0.029 3.971 13 N -0.575 5.575 14 H 0.445 0.555 15 C 0.316 3.684 16 C 0.165 3.835 17 C -0.145 4.145 18 C 0.151 3.849 19 N -0.587 5.587 20 C -0.255 4.255 21 H 0.058 0.942 22 C 0.012 3.988 23 N -0.896 5.896 24 Si 0.897 3.103 25 H -0.276 1.276 26 H -0.289 1.289 27 H -0.290 1.290 28 C 0.180 3.820 29 C -0.153 4.153 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.211 0.789 38 H 0.191 0.809 39 H 0.204 0.796 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.044 0.956 43 H 0.015 0.985 44 H 0.053 0.947 45 H 0.252 0.748 46 H 0.068 0.932 47 H 0.018 0.982 48 H 0.083 0.917 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.297 8.066 18.637 24.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.191 4.191 3 C -0.034 4.034 4 N -0.336 5.336 5 C 0.387 3.613 6 O -0.420 6.420 7 C -0.346 4.346 8 C -0.076 4.076 9 N -0.128 5.128 10 N -0.078 5.078 11 C -0.128 4.128 12 C -0.099 4.099 13 N -0.187 5.187 14 H 0.286 0.714 15 C 0.080 3.920 16 C 0.063 3.937 17 C -0.185 4.185 18 C 0.024 3.976 19 N -0.309 5.309 20 C -0.385 4.385 21 H 0.076 0.924 22 C -0.188 4.188 23 N -0.539 5.539 24 Si 0.727 3.273 25 H -0.201 1.201 26 H -0.215 1.215 27 H -0.217 1.217 28 C 0.054 3.946 29 C -0.193 4.193 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.227 0.773 38 H 0.208 0.792 39 H 0.221 0.779 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.063 0.937 43 H 0.032 0.968 44 H 0.072 0.928 45 H 0.062 0.938 46 H 0.087 0.913 47 H 0.036 0.964 48 H 0.101 0.899 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -14.575 7.944 19.476 25.590 hybrid contribution 1.782 -0.288 -0.801 1.975 sum -12.793 7.656 18.675 23.896 Atomic orbital electron populations 1.21760 0.95175 1.02148 1.01956 1.22090 0.95906 0.97567 1.03557 1.22116 0.80785 0.96777 1.03717 1.47987 1.05758 1.72692 1.07189 1.16897 0.86343 0.76221 0.81817 1.90779 1.13653 1.51464 1.86054 1.18602 0.96673 1.22457 0.96910 1.24617 0.94054 0.96278 0.92659 1.77472 1.03365 1.19881 1.12047 1.47023 1.09972 1.38765 1.12025 1.21554 0.94261 1.04020 0.92927 1.22278 0.95750 1.04310 0.87547 1.41588 1.13810 1.48810 1.14524 0.71352 1.19187 0.83588 0.97139 0.92044 1.21024 0.92953 0.96751 0.82967 1.22423 0.99076 0.95384 1.01603 1.20848 0.94091 0.90327 0.92303 1.43942 1.05726 1.00817 1.80454 1.19074 0.83029 1.09388 1.26971 0.92394 1.25261 0.97523 1.00246 0.95770 1.70049 1.33950 1.20061 1.29850 0.86313 0.85859 0.77896 0.77234 1.20131 1.21540 1.21703 1.20643 0.93873 0.90090 0.89984 1.22633 0.99212 0.94616 1.02873 0.92280 0.92669 0.92293 0.90632 0.91443 0.89166 0.90655 0.77297 0.79186 0.77895 0.90675 0.90481 0.93743 0.96757 0.92819 0.93798 0.91337 0.96419 0.89859 0.93841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.82 37.16 0.37 -0.80 16 2 C -0.15 -1.54 5.31 -26.73 -0.14 -1.68 16 3 C 0.09 1.01 4.84 -4.04 -0.02 0.99 16 4 N -0.60 -9.27 2.43 -167.62 -0.41 -9.68 16 5 C 0.60 10.14 7.01 -12.89 -0.09 10.05 16 6 O -0.54 -11.10 13.28 5.18 0.07 -11.03 16 7 C -0.33 -4.75 5.74 -104.83 -0.60 -5.35 16 8 C 0.11 1.32 9.49 -17.00 -0.16 1.16 16 9 N -0.31 -4.05 12.61 30.84 0.39 -3.66 16 10 N -0.31 -3.76 4.67 -11.88 -0.06 -3.81 16 11 C 0.00 -0.01 11.91 -16.35 -0.19 -0.21 16 12 C 0.03 0.17 11.92 -16.54 -0.20 -0.02 16 13 N -0.58 -5.50 6.24 -11.98 -0.07 -5.58 16 14 H 0.44 3.79 8.96 -40.82 -0.37 3.43 16 15 C 0.32 4.17 8.48 -154.52 -1.31 2.86 16 16 C 0.16 2.97 2.50 -67.89 -0.17 2.80 16 17 C -0.14 -2.81 5.27 -26.61 -0.14 -2.95 16 18 C 0.15 3.38 6.50 -3.71 -0.02 3.36 16 19 N -0.59 -15.47 2.93 -172.10 -0.51 -15.97 16 20 C -0.25 -7.34 9.46 -15.06 -0.14 -7.48 16 21 H 0.06 1.67 7.88 -52.49 -0.41 1.26 16 22 C 0.01 0.34 4.88 -17.43 -0.09 0.26 16 23 N -0.90 -26.84 11.97 55.49 0.66 -26.17 16 24 Si 0.90 22.41 29.58 -169.99 -5.03 17.38 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 28 C 0.18 4.49 5.30 -3.56 -0.02 4.47 16 29 C -0.15 -3.21 5.26 -26.61 -0.14 -3.35 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.36 7.58 -51.93 -0.39 -0.03 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.71 7.28 -51.93 -0.38 0.33 16 35 H 0.09 0.93 4.08 -51.93 -0.21 0.72 16 36 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 37 H 0.21 2.09 3.44 -52.48 -0.18 1.91 16 38 H 0.19 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.20 0.20 8.06 -52.49 -0.42 -0.22 16 40 H 0.08 1.28 7.89 -51.93 -0.41 0.87 16 41 H 0.08 1.68 6.41 -51.93 -0.33 1.35 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.05 1.19 7.93 -51.93 -0.41 0.78 16 45 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 46 H 0.07 1.90 6.85 -51.93 -0.36 1.54 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.08 1.98 6.03 -51.93 -0.31 1.66 16 49 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 382.57 15.07 5.77 5.77 Total: -1.00 -36.91 382.57 -9.38 -46.29 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -7.13 Total: 2.37 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -3.07 Total: 4.09 kcal Atomic # 7 Polarization: -64.88 SS G_CDS: 0.01 Total: -64.87 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.07 Total: -11.03 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.03 Total: 17.38 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.91 -9.38 -46.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479996771.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.569 kcal (2) G-P(sol) polarization free energy of solvation -36.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds