Wall clock time and date at job start Wed Apr 1 2020 03:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47271 * 2 1 4 4 N 1.46504 * 109.47344 * 179.97438 * 3 2 1 5 5 C 1.34778 * 119.99890 * 262.78710 * 4 3 2 6 6 O 1.21709 * 119.99607 * 174.30428 * 5 4 3 7 7 C 1.46600 * 119.99861 * 354.30858 * 5 4 3 8 8 C 1.41149 * 126.56410 * 27.27777 * 7 5 4 9 9 N 1.30524 * 108.27745 * 179.85237 * 8 7 5 10 10 N 1.39995 * 109.36484 * 0.41399 * 9 8 7 11 11 C 1.38454 * 143.84952 * 179.73645 * 10 9 8 12 12 C 1.33074 * 108.42281 * 179.97438 * 11 10 9 13 13 N 1.38061 * 108.13602 * 0.02562 * 12 11 10 14 14 H 0.97001 * 126.16646 * 179.97438 * 13 12 11 15 15 C 1.35010 * 108.27470 * 359.73408 * 10 9 8 16 16 C 1.46497 * 119.99937 * 82.78418 * 4 3 2 17 17 C 1.53039 * 109.46108 * 120.00125 * 16 4 3 18 18 C 1.53189 * 109.31436 * 181.38470 * 17 16 4 19 19 N 1.46925 * 108.89207 * 305.29382 * 18 17 16 20 20 C 1.36933 * 120.63021 * 233.67099 * 19 18 17 21 21 H 1.08000 * 119.99948 * 38.10501 * 20 19 18 22 22 C 1.38814 * 120.00105 * 218.09984 * 20 19 18 23 23 N 1.31617 * 120.00164 * 16.40371 * 22 20 19 24 24 Si 1.86807 * 120.00079 * 196.39788 * 22 20 19 25 25 H 1.48496 * 109.46791 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46855 * 119.99966 * 24 22 20 27 27 H 1.48499 * 109.47121 * 240.00255 * 24 22 20 28 28 C 1.47204 * 118.55432 * 53.54221 * 19 18 17 29 29 C 1.53043 * 109.46050 * 240.07205 * 16 4 3 30 30 H 1.08996 * 109.47352 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47105 * 300.00051 * 1 2 3 32 32 H 1.09000 * 109.46977 * 59.99974 * 1 2 3 33 33 H 1.08994 * 109.46950 * 239.99164 * 2 1 3 34 34 H 1.09001 * 109.46546 * 119.99708 * 2 1 3 35 35 H 1.09000 * 109.47182 * 59.99438 * 3 2 1 36 36 H 1.09000 * 109.47141 * 299.99925 * 3 2 1 37 37 H 1.08005 * 125.86474 * 0.02562 * 8 7 5 38 38 H 1.07998 * 125.78442 * 359.96029 * 11 10 9 39 39 H 1.07998 * 125.93027 * 180.02562 * 12 11 10 40 40 H 1.09003 * 109.44814 * 0.03578 * 16 4 3 41 41 H 1.08999 * 109.49484 * 61.43150 * 17 16 4 42 42 H 1.09003 * 109.49831 * 301.34258 * 17 16 4 43 43 H 1.08997 * 109.58390 * 65.15242 * 18 17 16 44 44 H 1.08997 * 109.58606 * 185.44007 * 18 17 16 45 45 H 0.96999 * 119.99979 * 180.02562 * 23 22 20 46 46 H 1.09006 * 109.53521 * 186.66804 * 28 19 18 47 47 H 1.08996 * 109.67891 * 66.36822 * 28 19 18 48 48 H 1.09002 * 109.49495 * 298.56572 * 29 16 4 49 49 H 1.09002 * 109.49753 * 58.63065 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1785 1.5892 1.1589 6 8 5.3911 1.4857 1.1751 7 6 3.4503 1.8733 2.3991 8 6 2.1178 1.5126 2.6933 9 7 1.8337 1.9392 3.8937 10 7 2.9478 2.5971 4.4283 11 6 3.4195 3.2738 5.5403 12 6 4.6774 3.6401 5.3075 13 7 5.0256 3.2033 4.0449 14 1 5.8841 3.3304 3.6117 15 6 3.9410 2.5586 3.5145 16 6 4.2381 1.2829 -1.2577 17 6 5.1180 2.5125 -1.4947 18 6 5.8564 2.3577 -2.8279 19 7 6.5916 1.0857 -2.8197 20 6 7.9334 1.0536 -3.0912 21 1 8.5767 1.8414 -2.7282 22 6 8.4666 0.0083 -3.8328 23 7 7.6740 -0.7667 -4.5422 24 14 10.3094 -0.2982 -3.8240 25 1 10.9738 0.7048 -2.9537 26 1 10.5817 -1.6622 -3.3038 27 1 10.8372 -0.1814 -5.2071 28 6 5.8549 -0.1508 -2.5107 29 6 5.1165 0.0320 -1.1810 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6768 1.9563 -0.8900 37 1 1.4489 0.9735 2.0387 38 1 2.8610 3.4711 6.4434 39 1 5.3153 4.1844 5.9881 40 1 3.5298 1.1794 -2.0797 41 1 5.8428 2.6025 -0.6856 42 1 4.4941 3.4058 -1.5258 43 1 5.1367 2.3586 -3.6464 44 1 6.5564 3.1834 -2.9558 45 1 8.0466 -1.4973 -5.0601 46 1 6.5557 -0.9816 -2.4283 47 1 5.1354 -0.3570 -3.3030 48 1 5.8414 0.1454 -0.3749 49 1 4.4916 -0.8401 -0.9885 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479996771.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:06 Heat of formation + Delta-G solvation = 112.724281 kcal Electronic energy + Delta-G solvation = -31555.613651 eV Core-core repulsion = 27521.259192 eV Total energy + Delta-G solvation = -4034.354459 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.08140 -41.25069 -39.19992 -38.38944 -37.12699 -34.99175 -33.61140 -33.43301 -31.83466 -31.39783 -30.60434 -29.48432 -27.31213 -26.63304 -24.54538 -23.84343 -23.56481 -23.02387 -22.47448 -22.15181 -21.13551 -20.32572 -18.92804 -18.24132 -17.58726 -17.22443 -17.05025 -16.86403 -16.51144 -16.09818 -15.71320 -15.47775 -15.44095 -15.26416 -14.90660 -14.70936 -14.44549 -14.34704 -14.10716 -13.93521 -13.86262 -13.64917 -13.29351 -13.04901 -12.88840 -12.69992 -12.64471 -12.59771 -12.21211 -12.17076 -12.03409 -11.94870 -11.80465 -11.72622 -11.47864 -11.34989 -11.14021 -10.60866 -10.43091 -10.14775 -9.49356 -8.60663 -8.55510 -7.88617 -5.44503 0.66760 0.82133 1.05923 1.42190 1.44265 1.46097 1.55695 1.95368 2.11132 2.40580 2.48681 3.24352 3.31572 3.69659 3.73094 3.83936 4.01520 4.05523 4.12232 4.17341 4.26678 4.28775 4.38766 4.44538 4.52167 4.55212 4.62864 4.69690 4.71332 4.73191 4.84477 4.87003 4.89838 4.99143 5.02652 5.12331 5.19496 5.25480 5.31522 5.41046 5.41675 5.46404 5.53887 5.65052 5.68119 5.82762 5.86197 6.20833 6.43439 6.62233 6.69744 7.15058 7.42834 7.82269 8.41848 9.15692 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.013051 B = 0.003229 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.882161 B = 8670.444943 C =10198.178868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.148 4.148 3 C 0.087 3.913 4 N -0.601 5.601 5 C 0.594 3.406 6 O -0.588 6.588 7 C -0.357 4.357 8 C 0.114 3.886 9 N -0.325 5.325 10 N -0.311 5.311 11 C -0.026 4.026 12 C 0.055 3.945 13 N -0.573 5.573 14 H 0.447 0.553 15 C 0.290 3.710 16 C 0.174 3.826 17 C -0.129 4.129 18 C 0.149 3.851 19 N -0.606 5.606 20 C -0.272 4.272 21 H 0.052 0.948 22 C -0.037 4.037 23 N -0.926 5.926 24 Si 0.963 3.037 25 H -0.269 1.269 26 H -0.289 1.289 27 H -0.284 1.284 28 C 0.191 3.809 29 C -0.136 4.136 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.228 0.772 38 H 0.224 0.776 39 H 0.257 0.743 40 H 0.093 0.907 41 H 0.050 0.950 42 H 0.073 0.927 43 H 0.022 0.978 44 H 0.049 0.951 45 H 0.252 0.748 46 H 0.030 0.970 47 H 0.008 0.992 48 H 0.054 0.946 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.611 9.555 20.657 27.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.187 4.187 3 C -0.035 4.035 4 N -0.332 5.332 5 C 0.386 3.614 6 O -0.470 6.470 7 C -0.377 4.377 8 C -0.067 4.067 9 N -0.147 5.147 10 N -0.081 5.081 11 C -0.150 4.150 12 C -0.072 4.072 13 N -0.185 5.185 14 H 0.290 0.710 15 C 0.052 3.948 16 C 0.071 3.929 17 C -0.169 4.169 18 C 0.023 3.977 19 N -0.330 5.330 20 C -0.402 4.402 21 H 0.069 0.931 22 C -0.234 4.234 23 N -0.570 5.570 24 Si 0.790 3.210 25 H -0.194 1.194 26 H -0.215 1.215 27 H -0.210 1.210 28 C 0.065 3.935 29 C -0.176 4.176 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.121 0.879 36 H 0.110 0.890 37 H 0.244 0.756 38 H 0.241 0.759 39 H 0.273 0.727 40 H 0.111 0.889 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.040 0.960 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.049 0.951 47 H 0.026 0.974 48 H 0.073 0.927 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.941 9.464 21.528 28.410 hybrid contribution 2.208 -0.669 -1.302 2.649 sum -13.733 8.795 20.226 25.981 Atomic orbital electron populations 1.21730 0.92913 1.02819 1.03049 1.22031 0.97775 0.96383 1.02492 1.22390 0.78034 0.97931 1.05165 1.47913 1.07357 1.72162 1.05720 1.17290 0.85927 0.75380 0.82828 1.90750 1.15712 1.53703 1.86828 1.18465 0.97706 1.24845 0.96685 1.24814 0.93443 0.95784 0.92651 1.77360 1.04417 1.20592 1.12331 1.47294 1.09312 1.38626 1.12894 1.22449 0.95279 1.04106 0.93116 1.23276 0.95599 1.02211 0.86108 1.41873 1.13177 1.47857 1.15616 0.71035 1.19387 0.85057 0.98021 0.92327 1.20739 0.92876 0.94388 0.84941 1.22202 0.98778 0.97297 0.98645 1.20960 0.94085 0.88434 0.94194 1.44185 1.05564 1.02383 1.80865 1.19315 0.84473 1.09563 1.26881 0.93085 1.26000 1.01846 1.00041 0.95535 1.70167 1.35730 1.20487 1.30606 0.85294 0.80694 0.77579 0.77387 1.19379 1.21530 1.21030 1.20425 0.92842 0.88667 0.91598 1.22350 0.98919 0.97065 0.99260 0.91868 0.91260 0.91522 0.92104 0.92186 0.87862 0.89004 0.75584 0.75941 0.72675 0.88947 0.93086 0.90847 0.95962 0.93236 0.93931 0.95132 0.97367 0.92748 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.82 71.98 0.71 -1.19 16 2 C -0.15 -2.77 5.31 30.59 0.16 -2.61 16 3 C 0.09 1.80 4.84 86.38 0.42 2.22 16 4 N -0.60 -18.14 2.43 -802.43 -1.95 -20.08 16 5 C 0.59 20.42 7.01 86.42 0.61 21.02 16 6 O -0.59 -25.09 13.28 -4.38 -0.06 -25.15 16 7 C -0.36 -10.33 5.74 -20.00 -0.11 -10.44 16 8 C 0.11 2.75 9.49 85.60 0.81 3.57 16 9 N -0.32 -8.20 12.61 -56.33 -0.71 -8.91 16 10 N -0.31 -7.10 4.67 -191.50 -0.89 -7.99 16 11 C -0.03 -0.32 11.91 82.49 0.98 0.66 16 12 C 0.05 0.46 11.92 82.55 0.98 1.44 16 13 N -0.57 -10.08 6.24 -191.83 -1.20 -11.28 16 14 H 0.45 7.26 8.96 -92.71 -0.83 6.43 16 15 C 0.29 7.43 8.48 133.14 1.13 8.56 16 16 C 0.17 6.22 2.50 45.02 0.11 6.33 16 17 C -0.13 -5.01 5.27 30.67 0.16 -4.84 16 18 C 0.15 6.75 6.50 86.36 0.56 7.31 16 19 N -0.61 -33.01 2.93 -698.41 -2.05 -35.06 16 20 C -0.27 -16.15 9.46 84.03 0.79 -15.35 16 21 H 0.05 3.04 7.88 -2.91 -0.02 3.01 16 22 C -0.04 -2.19 4.88 84.86 0.41 -1.78 16 23 N -0.93 -56.98 11.97 21.65 0.26 -56.72 16 24 Si 0.96 47.09 29.58 68.60 2.03 49.12 16 25 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 26 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 27 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 28 C 0.19 9.88 5.30 86.31 0.46 10.34 16 29 C -0.14 -5.88 5.26 30.67 0.16 -5.72 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.71 7.58 -2.39 -0.02 0.69 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 1.22 7.28 -2.39 -0.02 1.20 16 35 H 0.10 1.94 4.08 -2.39 -0.01 1.93 16 36 H 0.09 1.64 8.07 -2.39 -0.02 1.62 16 37 H 0.23 4.19 3.44 -2.91 -0.01 4.18 16 38 H 0.22 1.04 8.06 -2.91 -0.02 1.01 16 39 H 0.26 -0.87 8.06 -2.91 -0.02 -0.89 16 40 H 0.09 3.03 7.89 -2.39 -0.02 3.01 16 41 H 0.05 2.27 6.41 -2.39 -0.02 2.26 16 42 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.05 2.23 7.93 -2.39 -0.02 2.21 16 45 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 46 H 0.03 1.77 6.85 -2.38 -0.02 1.76 16 47 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 48 H 0.05 2.70 6.03 -2.39 -0.01 2.69 16 49 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -84.63 382.57 3.94 -80.69 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.15 Total: 15.87 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: 8.35 Total: 19.51 kcal Atomic # 7 Polarization: -133.50 SS G_CDS: -6.54 Total: -140.04 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.06 Total: -25.15 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -84.63 3.94 -80.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479996771.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.415 kcal (2) G-P(sol) polarization free energy of solvation -84.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds