Wall clock time and date at job start Wed Apr 1 2020 04:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.46676 * 2 1 4 4 C 1.36938 * 119.99875 * 275.30501 * 3 2 1 5 5 H 1.08000 * 119.99824 * 37.58360 * 4 3 2 6 6 C 1.38813 * 120.00052 * 217.58232 * 4 3 2 7 7 N 1.31622 * 119.99901 * 21.42190 * 6 4 3 8 8 Si 1.86800 * 120.00158 * 201.42578 * 6 4 3 9 9 H 1.48504 * 109.46960 * 60.00157 * 8 6 4 10 10 H 1.48502 * 109.47310 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47071 * 300.00099 * 8 6 4 12 12 C 1.46498 * 120.00125 * 95.31108 * 3 2 1 13 13 C 1.53000 * 109.46823 * 269.99688 * 12 3 2 14 14 C 1.52999 * 109.46957 * 179.97438 * 13 12 3 15 15 N 1.46502 * 109.47344 * 180.02562 * 14 13 12 16 16 C 1.34780 * 119.99979 * 180.02562 * 15 14 13 17 17 O 1.21280 * 120.00214 * 359.71727 * 16 15 14 18 18 C 1.50700 * 119.99704 * 179.72298 * 16 15 14 19 19 N 1.46497 * 109.47080 * 179.97438 * 18 16 15 20 20 N 1.39833 * 125.38970 * 269.69248 * 19 18 16 21 21 C 1.30235 * 110.09239 * 179.83833 * 20 19 18 22 22 C 1.45855 * 107.65599 * 0.41548 * 21 20 19 23 23 C 1.40001 * 134.26318 * 179.69245 * 22 21 20 24 24 C 1.37010 * 118.15806 * 180.02562 * 23 22 21 25 25 C 1.50707 * 120.17616 * 179.97438 * 24 23 22 26 26 C 1.38813 * 119.64897 * 0.02562 * 24 23 22 27 27 N 1.31503 * 121.58624 * 0.02562 * 26 24 23 28 28 C 1.32770 * 121.47458 * 359.97438 * 27 26 24 29 29 H 1.08993 * 109.47450 * 300.00222 * 1 2 3 30 30 H 1.09001 * 109.47032 * 60.00247 * 1 2 3 31 31 H 1.09004 * 109.46771 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47348 * 240.00439 * 2 1 3 33 33 H 1.09001 * 109.47032 * 119.99753 * 2 1 3 34 34 H 0.96996 * 119.99834 * 179.97438 * 7 6 4 35 35 H 1.08993 * 109.47624 * 149.99436 * 12 3 2 36 36 H 1.09005 * 109.47125 * 29.99630 * 12 3 2 37 37 H 1.09000 * 109.47227 * 60.00195 * 13 12 3 38 38 H 1.08989 * 109.47195 * 299.99531 * 13 12 3 39 39 H 1.09007 * 109.47277 * 59.99831 * 14 13 12 40 40 H 1.09005 * 109.47305 * 300.00135 * 14 13 12 41 41 H 0.96995 * 119.99501 * 359.72243 * 15 14 13 42 42 H 1.09000 * 109.47190 * 299.99910 * 18 16 15 43 43 H 1.09002 * 109.47103 * 59.99381 * 18 16 15 44 44 H 1.08005 * 126.17271 * 180.15445 * 21 20 19 45 45 H 1.08005 * 120.91693 * 0.02562 * 23 22 21 46 46 H 1.08998 * 109.46730 * 270.02197 * 25 24 23 47 47 H 1.08999 * 109.46804 * 30.02160 * 25 24 23 48 48 H 1.08998 * 109.46947 * 150.02667 * 25 24 23 49 49 H 1.07996 * 119.20796 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1430 2.0634 -1.1809 5 1 1.4104 1.9278 -1.9627 6 6 3.2111 2.9290 -1.3729 7 7 4.3025 2.7982 -0.6490 8 14 3.0993 4.2795 -2.6586 9 1 1.9627 5.1786 -2.3345 10 1 4.3617 5.0615 -2.6661 11 1 2.8844 3.6725 -3.9967 12 6 2.3731 2.0328 1.2633 13 6 1.1424 2.7383 1.8364 14 6 1.5128 3.4182 3.1561 15 7 0.3343 4.0933 3.7053 16 6 0.4240 4.7642 4.8708 17 8 1.4791 4.8048 5.4675 18 6 -0.7868 5.4639 5.4326 19 7 -0.4324 6.1138 6.6968 20 7 -0.5267 5.5278 7.9629 21 6 -0.1322 6.3688 8.8756 22 6 0.2462 7.6064 8.2029 23 6 0.7306 8.8461 8.6373 24 6 0.9841 9.8075 7.6947 25 6 1.5059 11.1584 8.1119 26 6 0.7566 9.5312 6.3536 27 7 0.3003 8.3627 5.9588 28 6 0.0365 7.3926 6.8260 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.0490 3.4028 -0.7834 35 1 3.1615 2.7642 1.0860 36 1 2.7254 1.2834 1.9721 37 1 0.3540 2.0069 2.0138 38 1 0.7902 3.4876 1.1277 39 1 2.3014 4.1496 2.9792 40 1 1.8649 2.6686 3.8648 41 1 -0.5095 4.0610 3.2279 42 1 -1.1347 6.2144 4.7228 43 1 -1.5784 4.7354 5.6082 44 1 -0.0961 6.1847 9.9393 45 1 0.8998 9.0390 9.6865 46 1 0.6677 11.8280 8.3046 47 1 2.1028 11.0533 9.0179 48 1 2.1246 11.5708 7.3149 49 1 0.9592 10.2941 5.6165 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490337238.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:54 Heat of formation + Delta-G solvation = 80.768331 kcal Electronic energy + Delta-G solvation = -29227.779052 eV Core-core repulsion = 25192.038879 eV Total energy + Delta-G solvation = -4035.740173 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.81285 -39.58689 -38.45359 -36.45490 -34.82603 -34.28012 -33.07306 -31.86232 -31.32804 -30.88727 -28.85445 -28.08410 -26.58916 -25.05573 -24.30195 -23.56965 -22.04084 -21.51467 -21.05388 -20.45558 -19.93399 -18.01615 -17.34173 -17.16638 -16.71516 -16.26334 -15.61067 -15.50409 -15.28915 -14.95439 -14.40650 -14.31384 -14.05548 -14.02679 -13.67405 -13.54898 -13.40945 -13.30035 -12.91737 -12.69493 -12.51901 -12.41599 -12.36240 -12.25102 -11.59586 -11.43194 -11.21294 -11.16081 -11.02267 -10.81622 -10.73608 -10.57926 -10.48219 -10.07064 -9.88003 -9.69764 -9.65565 -9.54287 -9.19683 -8.89766 -8.46798 -8.38816 -6.56289 -5.78338 -3.37656 0.54326 1.02670 1.80000 2.23568 2.60479 3.24017 3.36412 3.43061 3.43993 3.53616 3.92409 4.02849 4.34587 4.47422 4.47749 4.64279 4.68161 4.79273 4.86266 4.94828 5.11531 5.24777 5.25998 5.29450 5.39730 5.40917 5.59799 5.64678 5.82243 5.93851 5.97710 6.00398 6.07818 6.26082 6.27305 6.35015 6.42093 6.45145 6.52745 6.58390 6.74126 6.76413 6.91160 7.08874 7.17428 7.21043 7.55051 7.67752 7.69395 7.82317 8.23568 8.52714 9.19906 9.82301 10.41291 11.21224 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.013297 B = 0.002181 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.256664 B =12835.153682 C =14330.281603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.261 4.261 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.290 1.290 11 H -0.281 1.281 12 C 0.151 3.849 13 C -0.146 4.146 14 C 0.122 3.878 15 N -0.721 5.721 16 C 0.493 3.507 17 O -0.528 6.528 18 C 0.124 3.876 19 N -0.375 5.375 20 N -0.227 5.227 21 C 0.083 3.917 22 C -0.224 4.224 23 C 0.003 3.997 24 C -0.186 4.186 25 C -0.101 4.101 26 C 0.172 3.828 27 N -0.497 5.497 28 C 0.321 3.679 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.035 0.965 32 H 0.043 0.957 33 H 0.033 0.967 34 H 0.256 0.744 35 H 0.095 0.905 36 H 0.025 0.975 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.400 0.600 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.202 0.798 45 H 0.139 0.861 46 H 0.069 0.931 47 H 0.067 0.933 48 H 0.069 0.931 49 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.391 12.813 19.619 26.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.013 3.987 3 N -0.304 5.304 4 C -0.391 4.391 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.216 1.216 11 H -0.207 1.207 12 C 0.024 3.976 13 C -0.186 4.186 14 C -0.001 4.001 15 N -0.373 5.373 16 C 0.276 3.724 17 O -0.404 6.404 18 C -0.002 4.002 19 N -0.165 5.165 20 N -0.038 5.038 21 C -0.116 4.116 22 C -0.234 4.234 23 C -0.025 4.025 24 C -0.190 4.190 25 C -0.158 4.158 26 C 0.003 3.997 27 N -0.210 5.210 28 C 0.083 3.917 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.234 0.766 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.218 0.782 45 H 0.157 0.843 46 H 0.088 0.912 47 H 0.086 0.914 48 H 0.088 0.912 49 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -11.086 11.359 18.751 24.568 hybrid contribution -0.015 1.541 -0.026 1.541 sum -11.101 12.900 18.725 25.304 Atomic orbital electron populations 1.22368 1.00174 0.98881 1.01087 1.20851 0.91673 0.87405 0.98727 1.43732 1.76065 1.08161 1.02461 1.18933 1.04667 1.21329 0.94173 0.92368 1.25197 0.94208 1.01297 0.98073 1.69989 1.03167 1.37316 1.42364 0.86486 0.76948 0.82386 0.81650 1.20907 1.21594 1.20718 1.20790 0.94416 0.96646 0.85781 1.22541 1.02435 0.99886 0.93767 1.21504 0.86870 0.96067 0.95654 1.46095 1.14894 1.53584 1.22712 1.20777 0.90278 0.79670 0.81653 1.90746 1.29869 1.60405 1.59332 1.21460 0.96772 0.99370 0.82605 1.47513 1.56832 1.07443 1.04691 1.76720 1.18455 1.20767 0.87872 1.25021 0.97769 0.89293 0.99529 1.20476 1.11647 0.97224 0.94020 1.20616 0.92212 0.89700 0.99965 1.20398 1.05948 0.98221 0.94444 1.20616 1.00787 0.92353 1.02069 1.22658 0.91061 0.91743 0.94245 1.66743 1.16431 1.00423 1.37442 1.18908 0.95094 0.87344 0.90396 0.93821 0.93269 0.94638 0.93874 0.94853 0.93439 0.88761 0.95693 0.92995 0.91629 0.91521 0.91975 0.76618 0.85770 0.85876 0.78171 0.84321 0.91220 0.91449 0.91209 0.81871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 10.21 37.16 0.38 -2.57 16 2 C 0.14 2.94 6.44 -4.04 -0.03 2.91 16 3 N -0.58 -14.23 2.43 -173.24 -0.42 -14.66 16 4 C -0.26 -7.01 9.45 -15.06 -0.14 -7.16 16 5 H 0.06 1.56 7.92 -52.49 -0.42 1.15 16 6 C 0.01 0.35 4.95 -17.43 -0.09 0.26 16 7 N -0.89 -25.46 11.47 55.49 0.64 -24.83 16 8 Si 0.90 21.45 29.60 -169.99 -5.03 16.41 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.15 3.44 5.33 -4.04 -0.02 3.42 16 13 C -0.15 -2.70 5.65 -26.73 -0.15 -2.85 16 14 C 0.12 2.11 5.67 -4.04 -0.02 2.08 16 15 N -0.72 -10.18 5.56 -60.29 -0.33 -10.52 16 16 C 0.49 7.60 7.90 -10.98 -0.09 7.52 16 17 O -0.53 -10.69 16.43 5.56 0.09 -10.60 16 18 C 0.12 1.45 6.89 -5.20 -0.04 1.41 16 19 N -0.38 -5.23 3.13 -61.60 -0.19 -5.42 16 20 N -0.23 -3.00 12.40 31.85 0.39 -2.61 16 21 C 0.08 0.86 12.29 -15.18 -0.19 0.68 16 22 C -0.22 -2.59 6.38 -105.18 -0.67 -3.26 16 23 C 0.00 0.03 9.83 -39.37 -0.39 -0.36 16 24 C -0.19 -1.56 5.86 -104.85 -0.61 -2.17 16 25 C -0.10 -0.50 10.02 36.01 0.36 -0.14 16 26 C 0.17 1.76 10.82 -17.48 -0.19 1.57 16 27 N -0.50 -6.79 10.40 -12.34 -0.13 -6.92 16 28 C 0.32 4.51 7.97 -156.11 -1.24 3.27 16 29 H 0.04 0.75 6.64 -51.93 -0.34 0.40 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.04 0.94 8.08 -51.93 -0.42 0.52 16 33 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.09 2.47 5.52 -51.93 -0.29 2.18 16 36 H 0.02 0.55 7.86 -51.93 -0.41 0.14 16 37 H 0.05 0.89 6.64 -51.93 -0.34 0.55 16 38 H 0.06 1.30 8.14 -51.94 -0.42 0.87 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.40 4.36 8.47 -40.82 -0.35 4.02 16 42 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.20 1.14 8.06 -52.48 -0.42 0.71 16 45 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 46 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 48 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 49 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 411.17 15.07 6.20 6.20 Total: -1.00 -36.12 411.17 -9.51 -45.64 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -7.60 Total: 2.68 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: -3.13 Total: 4.62 kcal Atomic # 7 Polarization: -64.91 SS G_CDS: -0.05 Total: -64.95 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -36.12 -9.51 -45.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490337238.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.406 kcal (2) G-P(sol) polarization free energy of solvation -36.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds