Wall clock time and date at job start Wed Apr 1 2020 04:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.46676 * 2 1 4 4 C 1.36938 * 119.99875 * 275.30501 * 3 2 1 5 5 H 1.08000 * 119.99824 * 37.58360 * 4 3 2 6 6 C 1.38813 * 120.00052 * 217.58232 * 4 3 2 7 7 N 1.31622 * 119.99901 * 21.42190 * 6 4 3 8 8 Si 1.86800 * 120.00158 * 201.42578 * 6 4 3 9 9 H 1.48504 * 109.46960 * 60.00157 * 8 6 4 10 10 H 1.48502 * 109.47310 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47071 * 300.00099 * 8 6 4 12 12 C 1.46498 * 120.00125 * 95.31108 * 3 2 1 13 13 C 1.53000 * 109.46823 * 269.99688 * 12 3 2 14 14 C 1.52999 * 109.46957 * 179.97438 * 13 12 3 15 15 N 1.46502 * 109.47344 * 180.02562 * 14 13 12 16 16 C 1.34780 * 119.99979 * 180.02562 * 15 14 13 17 17 O 1.21280 * 120.00214 * 359.71727 * 16 15 14 18 18 C 1.50700 * 119.99704 * 179.72298 * 16 15 14 19 19 N 1.46497 * 109.47080 * 179.97438 * 18 16 15 20 20 N 1.39833 * 125.38970 * 269.69248 * 19 18 16 21 21 C 1.30235 * 110.09239 * 179.83833 * 20 19 18 22 22 C 1.45855 * 107.65599 * 0.41548 * 21 20 19 23 23 C 1.40001 * 134.26318 * 179.69245 * 22 21 20 24 24 C 1.37010 * 118.15806 * 180.02562 * 23 22 21 25 25 C 1.50707 * 120.17616 * 179.97438 * 24 23 22 26 26 C 1.38813 * 119.64897 * 0.02562 * 24 23 22 27 27 N 1.31503 * 121.58624 * 0.02562 * 26 24 23 28 28 C 1.32770 * 121.47458 * 359.97438 * 27 26 24 29 29 H 1.08993 * 109.47450 * 300.00222 * 1 2 3 30 30 H 1.09001 * 109.47032 * 60.00247 * 1 2 3 31 31 H 1.09004 * 109.46771 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47348 * 240.00439 * 2 1 3 33 33 H 1.09001 * 109.47032 * 119.99753 * 2 1 3 34 34 H 0.96996 * 119.99834 * 179.97438 * 7 6 4 35 35 H 1.08993 * 109.47624 * 149.99436 * 12 3 2 36 36 H 1.09005 * 109.47125 * 29.99630 * 12 3 2 37 37 H 1.09000 * 109.47227 * 60.00195 * 13 12 3 38 38 H 1.08989 * 109.47195 * 299.99531 * 13 12 3 39 39 H 1.09007 * 109.47277 * 59.99831 * 14 13 12 40 40 H 1.09005 * 109.47305 * 300.00135 * 14 13 12 41 41 H 0.96995 * 119.99501 * 359.72243 * 15 14 13 42 42 H 1.09000 * 109.47190 * 299.99910 * 18 16 15 43 43 H 1.09002 * 109.47103 * 59.99381 * 18 16 15 44 44 H 1.08005 * 126.17271 * 180.15445 * 21 20 19 45 45 H 1.08005 * 120.91693 * 0.02562 * 23 22 21 46 46 H 1.08998 * 109.46730 * 270.02197 * 25 24 23 47 47 H 1.08999 * 109.46804 * 30.02160 * 25 24 23 48 48 H 1.08998 * 109.46947 * 150.02667 * 25 24 23 49 49 H 1.07996 * 119.20796 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1430 2.0634 -1.1809 5 1 1.4104 1.9278 -1.9627 6 6 3.2111 2.9290 -1.3729 7 7 4.3025 2.7982 -0.6490 8 14 3.0993 4.2795 -2.6586 9 1 1.9627 5.1786 -2.3345 10 1 4.3617 5.0615 -2.6661 11 1 2.8844 3.6725 -3.9967 12 6 2.3731 2.0328 1.2633 13 6 1.1424 2.7383 1.8364 14 6 1.5128 3.4182 3.1561 15 7 0.3343 4.0933 3.7053 16 6 0.4240 4.7642 4.8708 17 8 1.4791 4.8048 5.4675 18 6 -0.7868 5.4639 5.4326 19 7 -0.4324 6.1138 6.6968 20 7 -0.5267 5.5278 7.9629 21 6 -0.1322 6.3688 8.8756 22 6 0.2462 7.6064 8.2029 23 6 0.7306 8.8461 8.6373 24 6 0.9841 9.8075 7.6947 25 6 1.5059 11.1584 8.1119 26 6 0.7566 9.5312 6.3536 27 7 0.3003 8.3627 5.9588 28 6 0.0365 7.3926 6.8260 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.0490 3.4028 -0.7834 35 1 3.1615 2.7642 1.0860 36 1 2.7254 1.2834 1.9721 37 1 0.3540 2.0069 2.0138 38 1 0.7902 3.4876 1.1277 39 1 2.3014 4.1496 2.9792 40 1 1.8649 2.6686 3.8648 41 1 -0.5095 4.0610 3.2279 42 1 -1.1347 6.2144 4.7228 43 1 -1.5784 4.7354 5.6082 44 1 -0.0961 6.1847 9.9393 45 1 0.8998 9.0390 9.6865 46 1 0.6677 11.8280 8.3046 47 1 2.1028 11.0533 9.0179 48 1 2.1246 11.5708 7.3149 49 1 0.9592 10.2941 5.6165 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490337238.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:53 Heat of formation + Delta-G solvation = 57.298207 kcal Electronic energy + Delta-G solvation = -29228.796792 eV Core-core repulsion = 25192.038879 eV Total energy + Delta-G solvation = -4036.757914 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.61817 -40.80954 -39.26179 -38.21262 -36.28939 -35.09187 -33.92175 -33.80966 -32.76479 -31.65804 -30.38926 -29.17500 -27.44221 -26.68584 -25.19760 -25.05408 -22.90300 -22.61773 -22.39883 -22.00451 -21.27565 -18.90942 -18.64539 -18.43612 -17.93850 -17.19232 -17.05245 -16.72297 -16.57879 -16.25824 -15.91337 -15.53072 -15.22908 -15.07595 -14.83541 -14.79756 -14.29961 -14.19918 -14.14804 -14.06383 -13.52565 -13.41985 -13.24844 -13.17726 -13.13659 -12.86580 -12.76774 -12.73678 -12.56590 -12.38161 -12.17592 -12.01965 -11.95633 -11.68368 -11.49021 -11.27134 -11.01422 -10.50423 -10.48283 -10.23964 -10.05630 -9.17402 -8.56126 -7.82292 -5.46514 -0.21353 0.27697 0.97872 1.40406 1.44390 1.45176 1.47421 1.53526 2.10170 2.49948 2.74776 3.17399 3.22942 3.26988 3.59143 3.64410 3.66905 3.80095 4.01198 4.03685 4.08071 4.13126 4.27045 4.38252 4.41612 4.42721 4.50438 4.65351 4.69381 4.74692 4.85068 4.87542 4.95351 4.95466 5.01676 5.14539 5.20271 5.31300 5.33095 5.33150 5.35458 5.42860 5.57511 5.59787 5.68322 5.77720 5.81556 6.38775 6.40635 6.46671 6.88965 7.07315 7.17437 7.87307 8.40046 9.12418 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.013297 B = 0.002181 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.256664 B =12835.153682 C =14330.281603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.133 3.867 3 N -0.601 5.601 4 C -0.263 4.263 5 H 0.057 0.943 6 C -0.038 4.038 7 N -0.919 5.919 8 Si 0.955 3.045 9 H -0.277 1.277 10 H -0.296 1.296 11 H -0.274 1.274 12 C 0.150 3.850 13 C -0.121 4.121 14 C 0.136 3.864 15 N -0.707 5.707 16 C 0.492 3.508 17 O -0.582 6.582 18 C 0.129 3.871 19 N -0.393 5.393 20 N -0.263 5.263 21 C 0.095 3.905 22 C -0.241 4.241 23 C 0.006 3.994 24 C -0.183 4.183 25 C -0.097 4.097 26 C 0.158 3.842 27 N -0.535 5.535 28 C 0.285 3.715 29 H 0.051 0.949 30 H 0.037 0.963 31 H 0.065 0.935 32 H 0.029 0.971 33 H 0.044 0.956 34 H 0.250 0.750 35 H 0.058 0.942 36 H 0.026 0.974 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.038 0.962 40 H 0.057 0.943 41 H 0.419 0.581 42 H 0.142 0.858 43 H 0.155 0.845 44 H 0.244 0.756 45 H 0.177 0.823 46 H 0.084 0.916 47 H 0.080 0.920 48 H 0.075 0.925 49 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.292 13.980 21.140 28.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.322 5.322 4 C -0.394 4.394 5 H 0.074 0.926 6 C -0.235 4.235 7 N -0.563 5.563 8 Si 0.783 3.217 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.199 1.199 12 C 0.023 3.977 13 C -0.161 4.161 14 C 0.011 3.989 15 N -0.360 5.360 16 C 0.278 3.722 17 O -0.461 6.461 18 C 0.004 3.996 19 N -0.183 5.183 20 N -0.074 5.074 21 C -0.103 4.103 22 C -0.251 4.251 23 C -0.022 4.022 24 C -0.186 4.186 25 C -0.154 4.154 26 C -0.010 4.010 27 N -0.250 5.250 28 C 0.048 3.952 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.256 0.744 42 H 0.159 0.841 43 H 0.173 0.827 44 H 0.260 0.740 45 H 0.194 0.806 46 H 0.102 0.898 47 H 0.099 0.901 48 H 0.094 0.906 49 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -13.052 12.524 20.257 27.158 hybrid contribution 0.625 1.196 -0.438 1.419 sum -12.427 13.720 19.819 27.119 Atomic orbital electron populations 1.22165 0.97116 1.00813 1.00902 1.21010 0.93959 0.85645 0.98596 1.43973 1.76471 1.09563 1.02191 1.19155 1.04084 1.21266 0.94857 0.92564 1.25881 0.94009 1.03403 1.00209 1.70131 1.03793 1.38133 1.44282 0.85548 0.76546 0.79865 0.79773 1.20307 1.22248 1.19908 1.20684 0.95293 0.96056 0.85633 1.22160 1.00764 0.99591 0.93576 1.21117 0.87382 0.95285 0.95073 1.45873 1.14712 1.52855 1.22594 1.21511 0.90789 0.78853 0.81074 1.90714 1.32211 1.62325 1.60844 1.21568 0.95200 1.00158 0.82718 1.47674 1.57793 1.07727 1.05135 1.76655 1.20497 1.22015 0.88241 1.25786 0.95368 0.88213 1.00964 1.20879 1.12199 0.98703 0.93338 1.21108 0.90697 0.88443 1.01957 1.20797 1.04594 0.99664 0.93594 1.20684 1.01481 0.90424 1.02841 1.23227 0.90395 0.91309 0.96051 1.66716 1.18137 1.01575 1.38545 1.19336 0.96306 0.87746 0.91859 0.92959 0.94410 0.91642 0.95244 0.93808 0.94068 0.92412 0.95554 0.90790 0.92736 0.94326 0.92436 0.74413 0.84082 0.82748 0.73995 0.80559 0.89758 0.90063 0.90566 0.79778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.01 10.21 71.98 0.73 -4.27 16 2 C 0.13 5.49 6.44 86.38 0.56 6.04 16 3 N -0.60 -29.39 2.43 -701.99 -1.71 -31.10 16 4 C -0.26 -14.23 9.45 84.03 0.79 -13.44 16 5 H 0.06 3.02 7.92 -2.91 -0.02 3.00 16 6 C -0.04 -2.10 4.95 84.86 0.42 -1.68 16 7 N -0.92 -54.49 11.47 21.65 0.25 -54.25 16 8 Si 0.95 44.71 29.60 68.60 2.03 46.74 16 9 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 10 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 11 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 12 C 0.15 6.98 5.33 86.38 0.46 7.44 16 13 C -0.12 -4.43 5.65 30.59 0.17 -4.26 16 14 C 0.14 4.77 5.67 86.38 0.49 5.26 16 15 N -0.71 -19.73 5.56 -463.04 -2.57 -22.30 16 16 C 0.49 15.34 7.90 87.66 0.69 16.03 16 17 O -0.58 -24.43 16.43 -3.03 -0.05 -24.48 16 18 C 0.13 2.97 6.89 85.63 0.59 3.56 16 19 N -0.39 -10.99 3.13 -348.81 -1.09 -12.08 16 20 N -0.26 -6.86 12.40 -53.15 -0.66 -7.52 16 21 C 0.10 1.86 12.29 86.90 1.07 2.92 16 22 C -0.24 -5.35 6.38 -20.23 -0.13 -5.48 16 23 C 0.01 0.09 9.83 22.41 0.22 0.31 16 24 C -0.18 -2.71 5.86 -20.01 -0.12 -2.82 16 25 C -0.10 -0.68 10.02 71.24 0.71 0.04 16 26 C 0.16 3.14 10.82 84.88 0.92 4.06 16 27 N -0.54 -14.84 10.40 -192.96 -2.01 -16.84 16 28 C 0.28 8.08 7.97 134.12 1.07 9.15 16 29 H 0.05 1.64 6.64 -2.39 -0.02 1.62 16 30 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.03 1.27 8.08 -2.39 -0.02 1.25 16 33 H 0.04 1.69 7.83 -2.39 -0.02 1.67 16 34 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 35 H 0.06 3.16 5.52 -2.39 -0.01 3.14 16 36 H 0.03 1.18 7.86 -2.38 -0.02 1.16 16 37 H 0.07 2.40 6.64 -2.39 -0.02 2.39 16 38 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 40 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 41 H 0.42 8.50 8.47 -92.71 -0.79 7.71 16 42 H 0.14 2.68 8.14 -2.39 -0.02 2.66 16 43 H 0.15 2.46 8.14 -2.39 -0.02 2.44 16 44 H 0.24 2.07 8.06 -2.91 -0.02 2.05 16 45 H 0.18 1.19 8.06 -2.91 -0.02 1.16 16 46 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 47 H 0.08 0.38 8.09 -2.39 -0.02 0.36 16 48 H 0.08 0.46 8.09 -2.39 -0.02 0.44 16 49 H 0.19 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -82.47 411.17 3.02 -79.44 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.18 Total: 19.54 kcal Atomic # 6 Polarization: 14.19 SS G_CDS: 8.65 Total: 22.85 kcal Atomic # 7 Polarization: -136.30 SS G_CDS: -7.79 Total: -144.09 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.05 Total: -24.48 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -82.47 3.02 -79.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490337238.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.742 kcal (2) G-P(sol) polarization free energy of solvation -82.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds