Wall clock time and date at job start Wed Apr 1 2020 03:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47333 * 39.78808 * 3 2 1 5 5 C 1.34780 * 119.99786 * 89.99414 * 4 3 2 6 6 O 1.21284 * 119.99551 * 180.02562 * 5 4 3 7 7 C 1.50694 * 120.00371 * 0.02562 * 5 4 3 8 8 C 1.52998 * 109.47242 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47239 * 180.02562 * 8 7 5 10 10 N 1.46496 * 109.47193 * 179.97438 * 9 8 7 11 11 C 1.34432 * 126.82226 * 124.99651 * 10 9 8 12 12 N 1.30832 * 108.07859 * 179.97438 * 11 10 9 13 13 C 1.33243 * 109.82687 * 359.97438 * 12 11 10 14 14 N 1.30713 * 108.94655 * 0.26562 * 13 12 11 15 15 C 1.46494 * 120.00142 * 270.00151 * 4 3 2 16 16 C 1.53042 * 109.46252 * 60.02058 * 15 4 3 17 17 C 1.53198 * 109.31480 * 178.60287 * 16 15 4 18 18 N 1.46919 * 108.76266 * 54.65609 * 17 16 15 19 19 C 1.36943 * 120.62874 * 126.40595 * 18 17 16 20 20 H 1.08001 * 119.99849 * 331.82239 * 19 18 17 21 21 C 1.38814 * 119.99947 * 151.82730 * 19 18 17 22 22 N 1.31619 * 119.99943 * 343.06772 * 21 19 18 23 23 Si 1.86800 * 119.99692 * 163.07690 * 21 19 18 24 24 H 1.48496 * 109.47219 * 90.00157 * 23 21 19 25 25 H 1.48507 * 109.46735 * 209.99711 * 23 21 19 26 26 H 1.48493 * 109.47297 * 329.99410 * 23 21 19 27 27 C 1.46921 * 118.74319 * 306.38541 * 18 17 16 28 28 C 1.53039 * 109.46040 * 299.96964 * 15 4 3 29 29 H 4.40644 * 5.51358 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.47608 * 279.78664 * 3 2 1 31 31 H 1.09002 * 109.47172 * 159.78179 * 3 2 1 32 32 H 1.09005 * 109.46747 * 59.99762 * 7 5 4 33 33 H 1.08998 * 109.47361 * 299.99790 * 7 5 4 34 34 H 1.08992 * 109.47284 * 60.00214 * 8 7 5 35 35 H 1.09000 * 109.47200 * 299.99801 * 8 7 5 36 36 H 1.08999 * 109.47412 * 59.99934 * 9 8 7 37 37 H 1.09000 * 109.46592 * 299.99843 * 9 8 7 38 38 H 1.07998 * 125.95957 * 359.97438 * 11 10 9 39 39 H 1.08003 * 125.52389 * 179.97438 * 13 12 11 40 40 H 1.09000 * 109.46724 * 179.97438 * 15 4 3 41 41 H 1.08996 * 109.49982 * 298.56914 * 16 15 4 42 42 H 1.09004 * 109.49517 * 58.66955 * 16 15 4 43 43 H 1.09000 * 109.59530 * 294.87254 * 17 16 15 44 44 H 1.08992 * 109.70255 * 174.50953 * 17 16 15 45 45 H 0.96997 * 120.00083 * 179.97438 * 22 21 19 46 46 H 1.09001 * 109.58761 * 293.82242 * 27 18 17 47 47 H 1.09004 * 109.70949 * 173.46331 * 27 18 17 48 48 H 1.08997 * 109.49767 * 301.34016 * 28 15 4 49 49 H 1.09007 * 109.49563 * 61.39673 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.0605 -0.8839 5 6 3.3593 -0.8016 -2.1874 6 8 3.7635 -1.6802 -2.9193 7 6 3.1079 0.5794 -2.7356 8 6 3.4397 0.6036 -4.2290 9 6 3.1851 2.0059 -4.7854 10 7 3.5034 2.0292 -6.2152 11 6 2.6911 2.4128 -7.2153 12 7 3.3462 2.2882 -8.3409 13 6 4.5743 1.8304 -8.1008 14 7 4.7163 1.6513 -6.8138 15 6 3.3796 -2.4029 -0.3510 16 6 2.0783 -2.9693 0.2216 17 6 2.3300 -4.3865 0.7463 18 7 3.4429 -4.3448 1.7046 19 6 3.2987 -4.8626 2.9641 20 1 2.3247 -4.8856 3.4303 21 6 4.4044 -5.3577 3.6418 22 7 5.5076 -5.6414 2.9824 23 14 4.3264 -5.6214 5.4894 24 1 3.8469 -6.9979 5.7732 25 1 5.6797 -5.4386 6.0730 26 1 3.3909 -4.6374 6.0909 27 6 4.7135 -3.7376 1.2858 28 6 4.4350 -2.3279 0.7547 29 1 -1.0498 -0.0001 -0.0003 30 1 3.0095 -0.1739 1.0127 31 1 3.0089 0.9652 -0.3552 32 1 3.7381 1.2984 -2.2120 33 1 2.0599 0.8423 -2.5916 34 1 2.8099 -0.1153 -4.7528 35 1 4.4878 0.3409 -4.3726 36 1 3.8152 2.7246 -4.2615 37 1 2.1371 2.2690 -4.6417 38 1 1.6750 2.7628 -7.1082 39 1 5.3283 1.6343 -8.8487 40 1 3.7367 -3.0517 -1.1508 41 1 1.7335 -2.3349 1.0380 42 1 1.3199 -3.0007 -0.5607 43 1 2.5876 -5.0435 -0.0845 44 1 1.4341 -4.7591 1.2426 45 1 6.2804 -5.9870 3.4560 46 1 5.1655 -4.3417 0.4991 47 1 5.3916 -3.6799 2.1373 48 1 5.3542 -1.9026 0.3521 49 1 4.0679 -1.6990 1.5659 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500053979.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:12 Heat of formation + Delta-G solvation = 134.509529 kcal Electronic energy + Delta-G solvation = -29885.086138 eV Core-core repulsion = 25851.676359 eV Total energy + Delta-G solvation = -4033.409780 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.33146 -40.26182 -37.68116 -35.87698 -35.69786 -33.24342 -32.53343 -32.06970 -31.48873 -30.23306 -29.68526 -27.68325 -27.17978 -25.08751 -23.50619 -22.30832 -22.24078 -21.94806 -21.28979 -19.70741 -19.27902 -18.14185 -17.62984 -17.03132 -16.79273 -16.47164 -15.98649 -15.74430 -15.21538 -14.87679 -14.75364 -14.38833 -13.94186 -13.84613 -13.71949 -13.56073 -13.28829 -13.17284 -13.01006 -12.90751 -12.51060 -12.37705 -12.07138 -11.97708 -11.55977 -11.23526 -11.21023 -11.01579 -10.74711 -10.60179 -10.46399 -10.32080 -10.24468 -10.18915 -10.12480 -10.09902 -10.00963 -9.85591 -9.73745 -9.50645 -8.66813 -8.43423 -6.70971 -5.81757 -3.24359 1.32927 1.96051 2.38830 2.63637 2.68004 2.71204 3.28017 3.35261 3.42223 3.44039 3.99281 4.00813 4.22844 4.32378 4.44842 4.46891 4.61951 4.71025 4.79783 4.90401 4.93850 5.06531 5.20604 5.25751 5.34924 5.43232 5.47710 5.55349 5.63815 5.81023 5.83486 5.90739 5.93146 6.03844 6.12902 6.16644 6.28521 6.45986 6.46738 6.51314 6.58226 6.74131 6.82583 6.93660 7.29507 7.41302 7.49614 7.62143 7.76760 7.77209 8.18269 8.41962 9.18082 9.81239 10.38291 11.27023 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.021299 B = 0.002051 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.319827 B =13649.684460 C =14382.865569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.202 4.202 3 C 0.214 3.786 4 N -0.602 5.602 5 C 0.514 3.486 6 O -0.535 6.535 7 C -0.139 4.139 8 C -0.116 4.116 9 C 0.129 3.871 10 N -0.377 5.377 11 C 0.251 3.749 12 N -0.550 5.550 13 C 0.195 3.805 14 N -0.312 5.312 15 C 0.144 3.856 16 C -0.134 4.134 17 C 0.147 3.853 18 N -0.591 5.591 19 C -0.253 4.253 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.902 5.902 23 Si 0.902 3.098 24 H -0.287 1.287 25 H -0.289 1.289 26 H -0.280 1.280 27 C 0.174 3.826 28 C -0.146 4.146 29 H 0.215 0.785 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.218 0.782 39 H 0.216 0.784 40 H 0.097 0.903 41 H 0.061 0.939 42 H 0.049 0.951 43 H 0.019 0.981 44 H 0.056 0.944 45 H 0.254 0.746 46 H 0.021 0.979 47 H 0.091 0.909 48 H 0.053 0.947 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.812 20.260 -13.230 25.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.203 4.203 3 C 0.091 3.909 4 N -0.333 5.333 5 C 0.302 3.698 6 O -0.411 6.411 7 C -0.180 4.180 8 C -0.154 4.154 9 C 0.007 3.993 10 N -0.168 5.168 11 C -0.046 4.046 12 N -0.277 5.277 13 C -0.108 4.108 14 N -0.140 5.140 15 C 0.043 3.957 16 C -0.174 4.174 17 C 0.020 3.980 18 N -0.314 5.314 19 C -0.382 4.382 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.731 3.269 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.048 3.952 28 C -0.186 4.186 29 H 0.232 0.768 30 H 0.127 0.873 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.121 0.879 38 H 0.234 0.766 39 H 0.233 0.767 40 H 0.115 0.885 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.037 0.963 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.039 0.961 47 H 0.109 0.891 48 H 0.071 0.929 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.886 19.500 -13.451 24.670 hybrid contribution -0.538 -0.068 1.212 1.328 sum -7.425 19.432 -12.238 24.135 Atomic orbital electron populations 1.24906 0.95886 0.99885 1.00035 1.23556 0.94890 1.00861 1.00986 1.18418 0.83739 0.91484 0.97278 1.48292 1.64672 1.12063 1.08302 1.20500 0.77306 0.90229 0.81744 1.90729 1.45452 1.47799 1.57158 1.21634 1.03929 0.95978 0.96427 1.21582 1.05116 0.94766 0.93952 1.21907 1.02322 0.99710 0.75380 1.50577 1.09875 1.47826 1.08485 1.26082 0.98728 0.96727 0.83044 1.70537 1.06267 1.23694 1.27216 1.26041 0.94713 0.97362 0.92687 1.78100 1.03039 1.23245 1.09610 1.21252 0.96344 0.81200 0.96909 1.22347 0.95706 0.99892 0.99472 1.20873 0.92351 0.92100 0.92658 1.44076 1.09354 1.67125 1.10867 1.19152 0.94777 1.33951 0.90359 0.91724 1.25062 0.97456 0.98574 0.98553 1.70026 1.03916 1.46511 1.34152 0.86313 0.76886 0.78054 0.85605 1.21380 1.21550 1.20519 1.20747 0.88759 0.86879 0.98854 1.22584 0.96861 1.02355 0.96811 0.76776 0.87317 0.88406 0.88467 0.88664 0.90475 0.89350 0.89041 0.87930 0.76576 0.76718 0.88517 0.92011 0.93224 0.96305 0.92530 0.93565 0.96123 0.89088 0.92872 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.85 19.25 29.55 0.57 -1.28 16 2 C -0.20 -2.18 11.92 -37.12 -0.44 -2.63 16 3 C 0.21 2.21 5.15 -6.83 -0.04 2.17 16 4 N -0.60 -8.13 2.37 -169.37 -0.40 -8.53 16 5 C 0.51 6.94 7.67 -10.99 -0.08 6.86 16 6 O -0.53 -9.61 15.31 5.55 0.09 -9.53 16 7 C -0.14 -1.12 4.25 -27.89 -0.12 -1.24 16 8 C -0.12 -1.01 4.71 -26.73 -0.13 -1.13 16 9 C 0.13 0.73 6.55 -4.04 -0.03 0.70 16 10 N -0.38 -3.22 3.69 -62.63 -0.23 -3.46 16 11 C 0.25 1.89 12.63 -90.65 -1.14 0.74 16 12 N -0.55 -5.56 11.19 -15.83 -0.18 -5.73 16 13 C 0.19 1.92 13.03 -91.81 -1.20 0.72 16 14 N -0.31 -3.50 12.57 29.29 0.37 -3.13 16 15 C 0.14 2.48 2.48 -67.89 -0.17 2.31 16 16 C -0.13 -2.35 4.73 -26.61 -0.13 -2.47 16 17 C 0.15 3.10 6.52 -3.71 -0.02 3.08 16 18 N -0.59 -14.58 2.99 -172.32 -0.52 -15.10 16 19 C -0.25 -6.82 9.58 -15.06 -0.14 -6.96 16 20 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 21 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 22 N -0.90 -25.94 11.19 55.49 0.62 -25.32 16 23 Si 0.90 21.36 29.59 -169.99 -5.03 16.33 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 C 0.17 4.08 5.30 -3.71 -0.02 4.06 16 28 C -0.15 -2.68 5.31 -26.61 -0.14 -2.82 16 29 H 0.22 1.43 7.80 -54.10 -0.42 1.01 16 30 H 0.11 1.19 6.46 -51.93 -0.34 0.85 16 31 H 0.10 0.66 6.44 -51.93 -0.33 0.33 16 32 H 0.10 0.55 7.40 -51.93 -0.38 0.17 16 33 H 0.10 0.59 7.95 -51.93 -0.41 0.18 16 34 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 35 H 0.09 1.02 8.10 -51.93 -0.42 0.60 16 36 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.10 0.24 8.09 -51.93 -0.42 -0.18 16 38 H 0.22 0.60 8.06 -52.49 -0.42 0.17 16 39 H 0.22 1.39 8.06 -52.48 -0.42 0.97 16 40 H 0.10 1.92 6.90 -51.93 -0.36 1.56 16 41 H 0.06 1.09 7.02 -51.93 -0.36 0.72 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 45 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.09 2.37 6.07 -51.93 -0.31 2.06 16 48 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 49 H 0.06 1.02 6.72 -51.92 -0.35 0.67 16 LS Contribution 402.23 15.07 6.06 6.06 Total: -1.00 -36.04 402.23 -9.99 -46.03 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -7.46 Total: 0.29 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -3.31 Total: 2.08 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: -0.34 Total: -61.27 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.04 -9.99 -46.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500053979.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.541 kcal (2) G-P(sol) polarization free energy of solvation -36.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds