Wall clock time and date at job start Wed Apr 1 2020 03:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47333 * 39.78808 * 3 2 1 5 5 C 1.34780 * 119.99786 * 89.99414 * 4 3 2 6 6 O 1.21284 * 119.99551 * 180.02562 * 5 4 3 7 7 C 1.50694 * 120.00371 * 0.02562 * 5 4 3 8 8 C 1.52998 * 109.47242 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47239 * 180.02562 * 8 7 5 10 10 N 1.46496 * 109.47193 * 179.97438 * 9 8 7 11 11 C 1.34432 * 126.82226 * 124.99651 * 10 9 8 12 12 N 1.30832 * 108.07859 * 179.97438 * 11 10 9 13 13 C 1.33243 * 109.82687 * 359.97438 * 12 11 10 14 14 N 1.30713 * 108.94655 * 0.26562 * 13 12 11 15 15 C 1.46494 * 120.00142 * 270.00151 * 4 3 2 16 16 C 1.53042 * 109.46252 * 60.02058 * 15 4 3 17 17 C 1.53198 * 109.31480 * 178.60287 * 16 15 4 18 18 N 1.46919 * 108.76266 * 54.65609 * 17 16 15 19 19 C 1.36943 * 120.62874 * 126.40595 * 18 17 16 20 20 H 1.08001 * 119.99849 * 331.82239 * 19 18 17 21 21 C 1.38814 * 119.99947 * 151.82730 * 19 18 17 22 22 N 1.31619 * 119.99943 * 343.06772 * 21 19 18 23 23 Si 1.86800 * 119.99692 * 163.07690 * 21 19 18 24 24 H 1.48496 * 109.47219 * 90.00157 * 23 21 19 25 25 H 1.48507 * 109.46735 * 209.99711 * 23 21 19 26 26 H 1.48493 * 109.47297 * 329.99410 * 23 21 19 27 27 C 1.46921 * 118.74319 * 306.38541 * 18 17 16 28 28 C 1.53039 * 109.46040 * 299.96964 * 15 4 3 29 29 H 4.40644 * 5.51358 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.47608 * 279.78664 * 3 2 1 31 31 H 1.09002 * 109.47172 * 159.78179 * 3 2 1 32 32 H 1.09005 * 109.46747 * 59.99762 * 7 5 4 33 33 H 1.08998 * 109.47361 * 299.99790 * 7 5 4 34 34 H 1.08992 * 109.47284 * 60.00214 * 8 7 5 35 35 H 1.09000 * 109.47200 * 299.99801 * 8 7 5 36 36 H 1.08999 * 109.47412 * 59.99934 * 9 8 7 37 37 H 1.09000 * 109.46592 * 299.99843 * 9 8 7 38 38 H 1.07998 * 125.95957 * 359.97438 * 11 10 9 39 39 H 1.08003 * 125.52389 * 179.97438 * 13 12 11 40 40 H 1.09000 * 109.46724 * 179.97438 * 15 4 3 41 41 H 1.08996 * 109.49982 * 298.56914 * 16 15 4 42 42 H 1.09004 * 109.49517 * 58.66955 * 16 15 4 43 43 H 1.09000 * 109.59530 * 294.87254 * 17 16 15 44 44 H 1.08992 * 109.70255 * 174.50953 * 17 16 15 45 45 H 0.96997 * 120.00083 * 179.97438 * 22 21 19 46 46 H 1.09001 * 109.58761 * 293.82242 * 27 18 17 47 47 H 1.09004 * 109.70949 * 173.46331 * 27 18 17 48 48 H 1.08997 * 109.49767 * 301.34016 * 28 15 4 49 49 H 1.09007 * 109.49563 * 61.39673 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.0605 -0.8839 5 6 3.3593 -0.8016 -2.1874 6 8 3.7635 -1.6802 -2.9193 7 6 3.1079 0.5794 -2.7356 8 6 3.4397 0.6036 -4.2290 9 6 3.1851 2.0059 -4.7854 10 7 3.5034 2.0292 -6.2152 11 6 2.6911 2.4128 -7.2153 12 7 3.3462 2.2882 -8.3409 13 6 4.5743 1.8304 -8.1008 14 7 4.7163 1.6513 -6.8138 15 6 3.3796 -2.4029 -0.3510 16 6 2.0783 -2.9693 0.2216 17 6 2.3300 -4.3865 0.7463 18 7 3.4429 -4.3448 1.7046 19 6 3.2987 -4.8626 2.9641 20 1 2.3247 -4.8856 3.4303 21 6 4.4044 -5.3577 3.6418 22 7 5.5076 -5.6414 2.9824 23 14 4.3264 -5.6214 5.4894 24 1 3.8469 -6.9979 5.7732 25 1 5.6797 -5.4386 6.0730 26 1 3.3909 -4.6374 6.0909 27 6 4.7135 -3.7376 1.2858 28 6 4.4350 -2.3279 0.7547 29 1 -1.0498 -0.0001 -0.0003 30 1 3.0095 -0.1739 1.0127 31 1 3.0089 0.9652 -0.3552 32 1 3.7381 1.2984 -2.2120 33 1 2.0599 0.8423 -2.5916 34 1 2.8099 -0.1153 -4.7528 35 1 4.4878 0.3409 -4.3726 36 1 3.8152 2.7246 -4.2615 37 1 2.1371 2.2690 -4.6417 38 1 1.6750 2.7628 -7.1082 39 1 5.3283 1.6343 -8.8487 40 1 3.7367 -3.0517 -1.1508 41 1 1.7335 -2.3349 1.0380 42 1 1.3199 -3.0007 -0.5607 43 1 2.5876 -5.0435 -0.0845 44 1 1.4341 -4.7591 1.2426 45 1 6.2804 -5.9870 3.4560 46 1 5.1655 -4.3417 0.4991 47 1 5.3916 -3.6799 2.1373 48 1 5.3542 -1.9026 0.3521 49 1 4.0679 -1.6990 1.5659 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500053979.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:11 Heat of formation + Delta-G solvation = 113.863223 kcal Electronic energy + Delta-G solvation = -29885.981429 eV Core-core repulsion = 25851.676359 eV Total energy + Delta-G solvation = -4034.305070 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.94217 -41.38894 -39.15508 -37.05315 -36.50241 -34.69136 -33.46650 -33.17099 -32.14373 -31.83234 -31.39696 -28.44759 -28.16031 -26.75144 -24.53124 -23.92322 -23.29652 -22.86373 -22.02817 -20.85742 -20.66761 -19.12667 -18.56218 -18.33379 -17.94066 -17.32011 -17.02409 -16.70685 -16.51322 -15.88389 -15.63899 -15.51655 -15.41167 -14.99611 -14.89879 -14.68950 -14.56484 -14.32548 -14.23572 -14.07035 -13.67382 -13.38193 -13.22411 -13.03865 -12.76823 -12.68356 -12.60826 -12.56192 -12.19320 -12.05107 -11.96164 -11.85966 -11.55766 -11.39036 -11.30461 -11.10020 -10.97806 -10.79021 -10.74766 -10.58802 -10.57416 -9.81306 -8.73638 -7.89496 -5.35953 0.73746 1.41561 1.47077 1.48039 1.53092 1.58214 1.65252 1.98623 2.03732 2.39170 2.50271 3.26474 3.40421 3.55983 3.57160 3.60355 3.63976 3.84028 3.86745 4.04653 4.07968 4.13774 4.23987 4.27737 4.33318 4.41838 4.44510 4.48291 4.57875 4.60677 4.68244 4.78412 4.81431 4.98014 5.00216 5.01228 5.10616 5.17513 5.21988 5.25895 5.32981 5.42576 5.49116 5.53783 5.61641 5.67495 5.98687 6.36293 6.38682 6.77313 7.11578 7.14377 7.15161 7.81157 8.34641 9.17655 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.021299 B = 0.002051 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.319827 B =13649.684460 C =14382.865569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.232 4.232 3 C 0.210 3.790 4 N -0.600 5.600 5 C 0.506 3.494 6 O -0.591 6.591 7 C -0.124 4.124 8 C -0.107 4.107 9 C 0.129 3.871 10 N -0.383 5.383 11 C 0.259 3.741 12 N -0.583 5.583 13 C 0.187 3.813 14 N -0.357 5.357 15 C 0.154 3.846 16 C -0.112 4.112 17 C 0.143 3.857 18 N -0.607 5.607 19 C -0.262 4.262 20 H 0.070 0.930 21 C -0.052 4.052 22 N -0.937 5.937 23 Si 0.970 3.030 24 H -0.287 1.287 25 H -0.293 1.293 26 H -0.266 1.266 27 C 0.180 3.820 28 C -0.128 4.128 29 H 0.240 0.760 30 H 0.103 0.897 31 H 0.142 0.858 32 H 0.133 0.867 33 H 0.128 0.872 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.108 0.892 37 H 0.149 0.851 38 H 0.264 0.736 39 H 0.233 0.767 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.003 0.997 44 H 0.061 0.939 45 H 0.250 0.750 46 H -0.013 1.013 47 H 0.062 0.938 48 H 0.062 0.938 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.541 23.771 -12.457 28.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.233 4.233 3 C 0.089 3.911 4 N -0.330 5.330 5 C 0.297 3.703 6 O -0.471 6.471 7 C -0.163 4.163 8 C -0.146 4.146 9 C 0.009 3.991 10 N -0.173 5.173 11 C -0.037 4.037 12 N -0.311 5.311 13 C -0.116 4.116 14 N -0.185 5.185 15 C 0.051 3.949 16 C -0.152 4.152 17 C 0.016 3.984 18 N -0.330 5.330 19 C -0.392 4.392 20 H 0.087 0.913 21 C -0.247 4.247 22 N -0.583 5.583 23 Si 0.798 3.202 24 H -0.214 1.214 25 H -0.219 1.219 26 H -0.191 1.191 27 C 0.054 3.946 28 C -0.167 4.167 29 H 0.257 0.743 30 H 0.121 0.879 31 H 0.159 0.841 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.126 0.874 37 H 0.167 0.833 38 H 0.280 0.720 39 H 0.250 0.750 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.021 0.979 44 H 0.079 0.921 45 H 0.059 0.941 46 H 0.005 0.995 47 H 0.080 0.920 48 H 0.081 0.919 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.657 23.059 -12.664 28.024 hybrid contribution 0.235 -1.216 0.926 1.546 sum -9.421 21.844 -11.738 26.527 Atomic orbital electron populations 1.25636 0.96722 0.98525 0.98693 1.23696 0.95280 1.02114 1.02219 1.18712 0.83962 0.92000 0.96454 1.48209 1.64651 1.11135 1.09023 1.21549 0.75766 0.91922 0.81082 1.90717 1.47872 1.50053 1.58482 1.21660 1.06564 0.92592 0.95531 1.21421 1.02153 0.96410 0.94649 1.22165 1.05446 0.97578 0.73911 1.50747 1.09205 1.47720 1.09661 1.26979 0.99833 0.94822 0.82025 1.70538 1.06658 1.25036 1.28891 1.26483 0.95347 0.96893 0.92877 1.78021 1.05262 1.24841 1.10394 1.20761 0.95539 0.83359 0.95266 1.22073 0.96084 0.97307 0.99759 1.21001 0.91339 0.94411 0.91608 1.44321 1.10244 1.67431 1.11053 1.19507 0.94984 1.33322 0.91360 0.91268 1.25866 0.97212 0.98871 1.02787 1.70200 1.04533 1.47893 1.35684 0.85246 0.76708 0.77959 0.80331 1.21351 1.21912 1.19102 1.20523 0.88013 0.89372 0.96685 1.22295 0.97981 0.98888 0.97572 0.74340 0.87907 0.84100 0.84927 0.85386 0.93053 0.93144 0.87368 0.83340 0.72031 0.75048 0.91949 0.91216 0.92026 0.97864 0.92083 0.94063 0.99506 0.91990 0.91904 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.73 19.25 74.32 1.43 -1.30 16 2 C -0.23 -4.10 11.92 31.13 0.37 -3.73 16 3 C 0.21 3.57 5.15 84.57 0.44 4.01 16 4 N -0.60 -15.13 2.37 -808.17 -1.91 -17.05 16 5 C 0.51 13.02 7.67 87.65 0.67 13.69 16 6 O -0.59 -21.93 15.31 -3.04 -0.05 -21.97 16 7 C -0.12 -1.55 4.25 29.85 0.13 -1.42 16 8 C -0.11 -1.70 4.71 30.59 0.14 -1.56 16 9 C 0.13 1.00 6.55 86.38 0.57 1.57 16 10 N -0.38 -5.81 3.69 -352.06 -1.30 -7.11 16 11 C 0.26 3.24 12.63 180.36 2.28 5.52 16 12 N -0.58 -11.19 11.19 -204.00 -2.28 -13.47 16 13 C 0.19 3.69 13.03 180.76 2.36 6.04 16 14 N -0.36 -7.98 12.57 -61.24 -0.77 -8.75 16 15 C 0.15 5.30 2.48 45.02 0.11 5.41 16 16 C -0.11 -3.85 4.73 30.67 0.15 -3.71 16 17 C 0.14 6.11 6.52 86.37 0.56 6.67 16 18 N -0.61 -30.70 2.99 -699.11 -2.09 -32.79 16 19 C -0.26 -14.29 9.58 84.03 0.81 -13.48 16 20 H 0.07 3.65 7.89 -2.91 -0.02 3.63 16 21 C -0.05 -2.90 4.92 84.86 0.42 -2.49 16 22 N -0.94 -55.88 11.19 21.65 0.24 -55.64 16 23 Si 0.97 44.37 29.59 68.60 2.03 46.40 16 24 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 25 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 27 C 0.18 8.85 5.30 86.36 0.46 9.31 16 28 C -0.13 -4.71 5.31 30.67 0.16 -4.55 16 29 H 0.24 2.09 7.80 -4.43 -0.03 2.06 16 30 H 0.10 1.91 6.46 -2.39 -0.02 1.89 16 31 H 0.14 1.15 6.44 -2.39 -0.02 1.13 16 32 H 0.13 0.80 7.40 -2.38 -0.02 0.78 16 33 H 0.13 0.87 7.95 -2.39 -0.02 0.85 16 34 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 35 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 36 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.15 -0.19 8.09 -2.39 -0.02 -0.21 16 38 H 0.26 0.27 8.06 -2.91 -0.02 0.25 16 39 H 0.23 3.13 8.06 -2.91 -0.02 3.10 16 40 H 0.06 2.60 6.90 -2.39 -0.02 2.59 16 41 H 0.07 2.31 7.02 -2.39 -0.02 2.29 16 42 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 43 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.06 2.51 7.93 -2.39 -0.02 2.49 16 45 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 46 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 47 H 0.06 3.39 6.07 -2.38 -0.01 3.37 16 48 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 49 H 0.07 2.47 6.72 -2.38 -0.02 2.45 16 Total: -1.00 -85.49 402.23 5.85 -79.64 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 0.94 Total: 10.76 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: 11.04 Total: 19.97 kcal Atomic # 7 Polarization: -126.69 SS G_CDS: -8.12 Total: -134.80 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.05 Total: -21.97 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -85.49 5.85 -79.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500053979.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.505 kcal (2) G-P(sol) polarization free energy of solvation -85.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds