Wall clock time and date at job start Wed Apr 1 2020 04:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.47073 * 2 1 4 4 C 1.50698 * 109.46931 * 239.99843 * 2 1 3 5 5 H 1.07998 * 120.00022 * 239.99807 * 4 2 1 6 6 C 1.37875 * 119.99817 * 60.00344 * 4 2 1 7 7 N 1.31520 * 120.00065 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47087 * 59.99904 * 8 6 4 10 10 H 1.48495 * 109.47228 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47204 * 299.99969 * 8 6 4 12 12 N 1.46901 * 109.46876 * 119.99964 * 2 1 3 13 13 C 1.46893 * 111.00054 * 58.95455 * 12 2 1 14 14 C 1.38409 * 111.00281 * 294.99755 * 12 2 1 15 15 N 1.31370 * 126.36821 * 28.86838 * 14 12 2 16 16 N 1.28514 * 110.08082 * 179.97438 * 15 14 12 17 17 C 1.31251 * 109.93636 * 0.02562 * 16 15 14 18 18 C 1.47850 * 126.47654 * 180.02562 * 17 16 15 19 19 C 1.40000 * 120.55822 * 145.85261 * 18 17 16 20 20 C 1.38358 * 118.28811 * 180.02562 * 19 18 17 21 21 C 1.38348 * 119.30923 * 359.97438 * 20 19 18 22 22 N 1.31910 * 121.07709 * 0.02569 * 21 20 19 23 23 C 1.31708 * 121.87664 * 359.65276 * 22 21 20 24 24 N 1.36467 * 126.37104 * 208.84304 * 14 12 2 25 25 C 1.46497 * 127.16759 * 0.02562 * 24 14 12 26 26 C 1.52998 * 109.47118 * 85.11086 * 25 24 14 27 27 C 1.53001 * 109.47091 * 60.00068 * 26 25 24 28 28 C 1.53004 * 109.46802 * 179.97438 * 26 25 24 29 29 O 1.42899 * 109.46939 * 299.99758 * 26 25 24 30 30 H 1.09004 * 109.46887 * 299.99865 * 1 2 3 31 31 H 1.08997 * 109.46944 * 59.99780 * 1 2 3 32 32 H 1.08994 * 109.47286 * 179.97438 * 1 2 3 33 33 H 0.96997 * 119.99634 * 179.97438 * 7 6 4 34 34 H 1.08996 * 109.47377 * 289.15936 * 13 12 2 35 35 H 1.09002 * 109.47070 * 49.16066 * 13 12 2 36 36 H 1.09003 * 109.47060 * 169.15969 * 13 12 2 37 37 H 1.07989 * 120.85689 * 0.02993 * 19 18 17 38 38 H 1.07996 * 120.34380 * 180.02562 * 20 19 18 39 39 H 1.07999 * 119.46104 * 179.97438 * 21 20 19 40 40 H 1.08003 * 119.71905 * 180.33989 * 23 22 21 41 41 H 1.09006 * 109.46848 * 205.11014 * 25 24 14 42 42 H 1.08996 * 109.46813 * 325.10691 * 25 24 14 43 43 H 1.08997 * 109.47288 * 60.00353 * 27 26 25 44 44 H 1.09003 * 109.46697 * 179.97438 * 27 26 25 45 45 H 1.08997 * 109.46809 * 299.99847 * 27 26 25 46 46 H 1.09001 * 109.47100 * 60.00473 * 28 26 25 47 47 H 1.09003 * 109.46671 * 179.97438 * 28 26 25 48 48 H 1.08997 * 109.47251 * 300.00020 * 28 26 25 49 49 H 0.96696 * 114.00050 * 300.00093 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3225 -1.1196 -4.0079 9 1 1.8279 -2.5198 -4.0081 10 1 1.8269 -0.4199 -5.2204 11 1 3.8075 -1.1191 -4.0077 12 7 2.0197 -0.6925 1.1995 13 6 1.5283 -2.0760 1.2460 14 6 1.6702 -0.0031 2.3477 15 7 0.6166 0.7657 2.5044 16 7 0.5968 1.2499 3.6947 17 6 1.6369 0.8200 4.3700 18 6 1.9720 1.1494 5.7719 19 6 2.5916 0.2031 6.5968 20 6 2.8836 0.5612 7.9010 21 6 2.5577 1.8307 8.3439 22 7 1.9740 2.7020 7.5438 23 6 1.6817 2.4107 6.2931 24 7 2.3558 0.0039 3.5276 25 6 3.5986 -0.7088 3.8334 26 6 4.7935 0.1309 3.3772 27 6 4.7823 1.4741 4.1098 28 6 6.0915 -0.6132 3.6971 29 8 4.7075 0.3558 1.9686 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 0.7088 1.1613 -3.4843 34 1 0.4590 -2.0750 1.4570 35 1 1.7086 -2.5581 0.2851 36 1 2.0529 -2.6217 2.0304 37 1 2.8354 -0.7810 6.2249 38 1 3.3616 -0.1427 8.5660 39 1 2.7841 2.1126 9.3616 40 1 1.2086 3.1528 5.6670 41 1 3.6642 -0.8804 4.9079 42 1 3.6065 -1.6656 3.3115 43 1 4.8479 1.3025 5.1842 44 1 5.6338 2.0721 3.7851 45 1 3.8576 2.0043 3.8823 46 1 6.0998 -1.5702 3.1755 47 1 6.9428 -0.0151 3.3717 48 1 6.1568 -0.7844 4.7716 49 1 4.7095 -0.4540 1.4402 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001541800737.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:10 Heat of formation + Delta-G solvation = 96.330103 kcal Electronic energy + Delta-G solvation = -32323.070082 eV Core-core repulsion = 28288.004718 eV Total energy + Delta-G solvation = -4035.065364 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.62026 -40.16592 -38.39215 -37.30074 -34.51089 -33.18965 -32.59085 -32.07353 -31.93041 -28.94428 -28.58342 -27.59037 -27.10311 -25.33900 -25.15080 -24.05899 -23.71968 -21.60352 -21.08074 -20.47768 -19.42251 -17.58071 -17.25600 -16.65223 -16.35992 -16.33211 -15.75717 -15.48906 -15.28424 -14.94052 -14.71642 -14.32982 -14.11454 -14.03908 -13.68597 -13.57075 -13.18359 -12.76675 -12.66071 -12.39465 -12.35756 -12.26282 -11.86119 -11.84505 -11.69786 -11.40627 -11.24453 -11.12642 -10.92790 -10.78293 -10.47658 -10.42529 -10.32434 -10.17877 -10.06694 -9.83994 -9.77470 -9.57389 -9.40451 -8.72482 -8.53587 -8.37231 -7.56278 -6.02081 -4.09542 0.59294 0.95568 2.15379 2.52193 3.23755 3.29471 3.35300 3.35768 3.63923 4.02623 4.12374 4.30704 4.33341 4.39598 4.50167 4.55443 4.58309 4.61153 4.77429 4.82439 4.93897 5.15032 5.16665 5.29195 5.36419 5.42379 5.55634 5.59330 5.66502 5.68385 5.73969 5.78715 5.87176 5.91240 6.06279 6.10300 6.14806 6.27553 6.38092 6.46971 6.77326 6.95574 7.18178 7.37528 7.51129 7.69781 7.71506 7.73996 7.91268 7.99430 8.33937 8.48357 8.91005 9.18950 9.54639 11.03914 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.016899 B = 0.003506 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.486810 B = 7984.881610 C = 8848.667102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.233 3.767 3 H 0.045 0.955 4 C -0.512 4.512 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.884 5.884 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.458 5.458 13 C 0.037 3.963 14 C 0.407 3.593 15 N -0.308 5.308 16 N -0.265 5.265 17 C 0.179 3.821 18 C -0.038 4.038 19 C -0.075 4.075 20 C -0.168 4.168 21 C 0.099 3.901 22 N -0.477 5.477 23 C 0.138 3.862 24 N -0.462 5.462 25 C 0.078 3.922 26 C 0.116 3.884 27 C -0.138 4.138 28 C -0.175 4.175 29 O -0.535 6.535 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.019 0.981 33 H 0.262 0.738 34 H 0.032 0.968 35 H 0.098 0.902 36 H 0.041 0.959 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.158 0.842 40 H 0.166 0.834 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.071 0.929 48 H 0.063 0.937 49 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.992 -5.092 20.086 22.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.129 3.871 3 H 0.063 0.937 4 C -0.551 4.551 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.726 3.274 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.183 5.183 13 C -0.110 4.110 14 C 0.052 3.948 15 N -0.152 5.152 16 N -0.106 5.106 17 C -0.086 4.086 18 C -0.043 4.043 19 C -0.102 4.102 20 C -0.188 4.188 21 C -0.059 4.059 22 N -0.185 5.185 23 C -0.021 4.021 24 N -0.156 5.156 25 C -0.046 4.046 26 C 0.073 3.927 27 C -0.195 4.195 28 C -0.233 4.233 29 O -0.341 6.341 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.039 0.961 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.116 0.884 36 H 0.060 0.940 37 H 0.152 0.848 38 H 0.156 0.844 39 H 0.175 0.825 40 H 0.184 0.816 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.090 0.910 48 H 0.082 0.918 49 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 7.919 -2.829 20.033 21.727 hybrid contribution 1.023 -2.709 -1.154 3.117 sum 8.943 -5.538 18.879 21.612 Atomic orbital electron populations 1.22712 0.98842 0.99445 1.03579 1.19338 0.91433 0.94161 0.82204 0.93664 1.20942 1.31785 1.12853 0.89476 0.91947 1.24882 0.95037 0.95047 0.98876 1.69915 1.36009 1.22552 1.23667 0.86567 0.79104 0.79503 0.82197 1.20381 1.21346 1.20260 1.59313 1.57692 1.02493 0.98804 1.22341 0.97783 0.87841 1.03046 1.23051 0.87680 0.97722 0.86304 1.74954 1.16678 1.14660 1.08954 1.74365 1.16755 1.19460 1.00063 1.22060 0.94332 0.99212 0.92950 1.18467 1.00988 0.95815 0.89004 1.21727 0.95982 0.98904 0.93616 1.22019 1.02265 0.98468 0.96008 1.22894 0.93715 0.89694 0.99570 1.67775 1.11276 1.35161 1.04280 1.22985 0.94058 0.93784 0.91269 1.46131 1.20476 1.37603 1.11427 1.22842 0.82752 0.96339 1.02624 1.21424 0.91656 0.95329 0.84260 1.21749 1.03536 0.95767 0.98469 1.22450 0.97799 1.00986 1.02075 1.86676 1.96322 1.36713 1.14407 0.92012 0.89654 0.96141 0.92762 0.94904 0.88394 0.94033 0.84757 0.84354 0.82507 0.81646 0.88527 0.88314 0.91834 0.91495 0.91812 0.91828 0.90965 0.91765 0.76522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.70 8.28 37.16 0.31 -4.40 16 2 C 0.23 5.78 2.21 -68.86 -0.15 5.62 16 3 H 0.05 1.32 8.11 -51.93 -0.42 0.90 16 4 C -0.51 -13.21 7.78 -34.44 -0.27 -13.48 16 5 H 0.06 1.54 6.83 -52.49 -0.36 1.18 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.88 -25.10 11.32 55.43 0.63 -24.47 16 8 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.46 -9.20 4.24 -176.09 -0.75 -9.95 16 13 C 0.04 0.66 8.66 60.06 0.52 1.18 16 14 C 0.41 8.05 6.10 -318.91 -1.94 6.11 16 15 N -0.31 -6.83 8.80 30.31 0.27 -6.56 16 16 N -0.27 -5.31 12.20 32.59 0.40 -4.92 16 17 C 0.18 2.90 6.25 -153.78 -0.96 1.94 16 18 C -0.04 -0.48 5.09 -104.82 -0.53 -1.01 16 19 C -0.07 -0.70 8.81 -38.88 -0.34 -1.05 16 20 C -0.17 -1.24 10.10 -39.50 -0.40 -1.64 16 21 C 0.10 0.85 11.17 -17.48 -0.20 0.65 16 22 N -0.48 -5.57 10.35 -12.91 -0.13 -5.71 16 23 C 0.14 1.76 10.93 -17.13 -0.19 1.57 16 24 N -0.46 -7.27 2.37 -114.69 -0.27 -7.54 16 25 C 0.08 0.89 5.13 -4.04 -0.02 0.87 16 26 C 0.12 1.36 1.17 -90.62 -0.11 1.25 16 27 C -0.14 -1.69 7.99 37.16 0.30 -1.39 16 28 C -0.18 -1.47 8.82 37.16 0.33 -1.14 16 29 O -0.53 -8.44 12.01 -35.23 -0.42 -8.86 16 30 H 0.06 1.56 5.10 -51.93 -0.26 1.29 16 31 H 0.08 2.38 6.07 -51.93 -0.32 2.07 16 32 H 0.02 0.48 6.64 -51.93 -0.34 0.14 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.03 0.61 6.87 -51.93 -0.36 0.26 16 35 H 0.10 1.80 6.26 -51.93 -0.33 1.48 16 36 H 0.04 0.59 7.50 -51.93 -0.39 0.20 16 37 H 0.13 1.04 5.68 -52.49 -0.30 0.74 16 38 H 0.14 0.59 8.06 -52.49 -0.42 0.16 16 39 H 0.16 0.87 8.06 -52.49 -0.42 0.44 16 40 H 0.17 2.16 8.06 -52.48 -0.42 1.74 16 41 H 0.10 0.83 4.51 -51.93 -0.23 0.59 16 42 H 0.10 1.05 7.50 -51.93 -0.39 0.66 16 43 H 0.06 0.64 8.05 -51.93 -0.42 0.22 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.98 6.49 -51.93 -0.34 0.65 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.39 5.63 8.89 45.56 0.41 6.03 16 LS Contribution 385.48 15.07 5.81 5.81 Total: -1.00 -32.30 385.48 -9.39 -41.69 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -6.14 Total: 8.17 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -3.75 Total: -3.30 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: 0.14 Total: -59.15 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: -0.42 Total: -8.86 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.30 -9.39 -41.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001541800737.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.022 kcal (2) G-P(sol) polarization free energy of solvation -32.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds