Wall clock time and date at job start Wed Apr 1 2020 04:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.47073 * 2 1 4 4 C 1.50698 * 109.46931 * 239.99843 * 2 1 3 5 5 H 1.07998 * 120.00022 * 239.99807 * 4 2 1 6 6 C 1.37875 * 119.99817 * 60.00344 * 4 2 1 7 7 N 1.31520 * 120.00065 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47087 * 59.99904 * 8 6 4 10 10 H 1.48495 * 109.47228 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47204 * 299.99969 * 8 6 4 12 12 N 1.46901 * 109.46876 * 119.99964 * 2 1 3 13 13 C 1.46893 * 111.00054 * 58.95455 * 12 2 1 14 14 C 1.38409 * 111.00281 * 294.99755 * 12 2 1 15 15 N 1.31370 * 126.36821 * 28.86838 * 14 12 2 16 16 N 1.28514 * 110.08082 * 179.97438 * 15 14 12 17 17 C 1.31251 * 109.93636 * 0.02562 * 16 15 14 18 18 C 1.47850 * 126.47654 * 180.02562 * 17 16 15 19 19 C 1.40000 * 120.55822 * 145.85261 * 18 17 16 20 20 C 1.38358 * 118.28811 * 180.02562 * 19 18 17 21 21 C 1.38348 * 119.30923 * 359.97438 * 20 19 18 22 22 N 1.31910 * 121.07709 * 0.02569 * 21 20 19 23 23 C 1.31708 * 121.87664 * 359.65276 * 22 21 20 24 24 N 1.36467 * 126.37104 * 208.84304 * 14 12 2 25 25 C 1.46497 * 127.16759 * 0.02562 * 24 14 12 26 26 C 1.52998 * 109.47118 * 85.11086 * 25 24 14 27 27 C 1.53001 * 109.47091 * 60.00068 * 26 25 24 28 28 C 1.53004 * 109.46802 * 179.97438 * 26 25 24 29 29 O 1.42899 * 109.46939 * 299.99758 * 26 25 24 30 30 H 1.09004 * 109.46887 * 299.99865 * 1 2 3 31 31 H 1.08997 * 109.46944 * 59.99780 * 1 2 3 32 32 H 1.08994 * 109.47286 * 179.97438 * 1 2 3 33 33 H 0.96997 * 119.99634 * 179.97438 * 7 6 4 34 34 H 1.08996 * 109.47377 * 289.15936 * 13 12 2 35 35 H 1.09002 * 109.47070 * 49.16066 * 13 12 2 36 36 H 1.09003 * 109.47060 * 169.15969 * 13 12 2 37 37 H 1.07989 * 120.85689 * 0.02993 * 19 18 17 38 38 H 1.07996 * 120.34380 * 180.02562 * 20 19 18 39 39 H 1.07999 * 119.46104 * 179.97438 * 21 20 19 40 40 H 1.08003 * 119.71905 * 180.33989 * 23 22 21 41 41 H 1.09006 * 109.46848 * 205.11014 * 25 24 14 42 42 H 1.08996 * 109.46813 * 325.10691 * 25 24 14 43 43 H 1.08997 * 109.47288 * 60.00353 * 27 26 25 44 44 H 1.09003 * 109.46697 * 179.97438 * 27 26 25 45 45 H 1.08997 * 109.46809 * 299.99847 * 27 26 25 46 46 H 1.09001 * 109.47100 * 60.00473 * 28 26 25 47 47 H 1.09003 * 109.46671 * 179.97438 * 28 26 25 48 48 H 1.08997 * 109.47251 * 300.00020 * 28 26 25 49 49 H 0.96696 * 114.00050 * 300.00093 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3225 -1.1196 -4.0079 9 1 1.8279 -2.5198 -4.0081 10 1 1.8269 -0.4199 -5.2204 11 1 3.8075 -1.1191 -4.0077 12 7 2.0197 -0.6925 1.1995 13 6 1.5283 -2.0760 1.2460 14 6 1.6702 -0.0031 2.3477 15 7 0.6166 0.7657 2.5044 16 7 0.5968 1.2499 3.6947 17 6 1.6369 0.8200 4.3700 18 6 1.9720 1.1494 5.7719 19 6 2.5916 0.2031 6.5968 20 6 2.8836 0.5612 7.9010 21 6 2.5577 1.8307 8.3439 22 7 1.9740 2.7020 7.5438 23 6 1.6817 2.4107 6.2931 24 7 2.3558 0.0039 3.5276 25 6 3.5986 -0.7088 3.8334 26 6 4.7935 0.1309 3.3772 27 6 4.7823 1.4741 4.1098 28 6 6.0915 -0.6132 3.6971 29 8 4.7075 0.3558 1.9686 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 0.7088 1.1613 -3.4843 34 1 0.4590 -2.0750 1.4570 35 1 1.7086 -2.5581 0.2851 36 1 2.0529 -2.6217 2.0304 37 1 2.8354 -0.7810 6.2249 38 1 3.3616 -0.1427 8.5660 39 1 2.7841 2.1126 9.3616 40 1 1.2086 3.1528 5.6670 41 1 3.6642 -0.8804 4.9079 42 1 3.6065 -1.6656 3.3115 43 1 4.8479 1.3025 5.1842 44 1 5.6338 2.0721 3.7851 45 1 3.8576 2.0043 3.8823 46 1 6.0998 -1.5702 3.1755 47 1 6.9428 -0.0151 3.3717 48 1 6.1568 -0.7844 4.7716 49 1 4.7095 -0.4540 1.4402 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001541800737.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:10 Heat of formation + Delta-G solvation = 74.600839 kcal Electronic energy + Delta-G solvation = -32324.012333 eV Core-core repulsion = 28288.004718 eV Total energy + Delta-G solvation = -4036.007615 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.97782 -40.99750 -39.41339 -38.98298 -35.72240 -34.89108 -33.77231 -33.08817 -32.86493 -30.73400 -30.00398 -28.52133 -28.04184 -27.21291 -26.76828 -25.05713 -24.60585 -23.22467 -22.20801 -21.62927 -20.89782 -18.68799 -18.32337 -18.02588 -17.73267 -17.51636 -16.95302 -16.76802 -16.59086 -16.30973 -15.91504 -15.56273 -15.37205 -15.04099 -14.81762 -14.71651 -14.35121 -14.25397 -13.68349 -13.52382 -13.43915 -13.21338 -13.13864 -13.07267 -12.95087 -12.81405 -12.67939 -12.63488 -12.52143 -12.21446 -12.19922 -12.04154 -11.96927 -11.57947 -11.43654 -11.19023 -10.72427 -10.65364 -10.56974 -10.46594 -10.39437 -9.85489 -9.11802 -8.07603 -6.22252 -0.28568 0.20946 0.87760 1.29880 1.46868 1.49146 1.56272 1.85366 2.44177 2.79412 2.98258 3.09142 3.21778 3.24461 3.45952 3.54814 3.61845 3.76368 3.84828 3.93512 3.99244 4.06280 4.17101 4.29884 4.41082 4.53551 4.60210 4.63061 4.65665 4.71375 4.73785 4.79025 4.85281 4.91075 4.96540 5.02879 5.04644 5.12127 5.17076 5.20065 5.28907 5.39079 5.44227 5.62126 5.66687 5.71500 5.86694 6.07580 6.27941 6.65646 6.87511 6.89181 6.92996 7.46415 7.75936 8.98740 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.016899 B = 0.003506 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.486810 B = 7984.881610 C = 8848.667102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.249 3.751 3 H -0.011 1.011 4 C -0.515 4.515 5 H 0.078 0.922 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.968 3.032 9 H -0.265 1.265 10 H -0.294 1.294 11 H -0.268 1.268 12 N -0.446 5.446 13 C 0.039 3.961 14 C 0.387 3.613 15 N -0.359 5.359 16 N -0.317 5.317 17 C 0.210 3.790 18 C -0.065 4.065 19 C -0.067 4.067 20 C -0.145 4.145 21 C 0.103 3.897 22 N -0.501 5.501 23 C 0.123 3.877 24 N -0.451 5.451 25 C 0.070 3.930 26 C 0.110 3.890 27 C -0.133 4.133 28 C -0.165 4.165 29 O -0.569 6.569 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.025 0.975 33 H 0.260 0.740 34 H 0.016 0.984 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.159 0.841 38 H 0.188 0.812 39 H 0.194 0.806 40 H 0.142 0.858 41 H 0.135 0.865 42 H 0.114 0.886 43 H 0.092 0.908 44 H 0.061 0.939 45 H 0.021 0.979 46 H 0.075 0.925 47 H 0.065 0.935 48 H 0.095 0.905 49 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.088 -8.499 23.642 27.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.143 3.857 3 H 0.007 0.993 4 C -0.553 4.553 5 H 0.096 0.904 6 C -0.190 4.190 7 N -0.562 5.562 8 Si 0.793 3.207 9 H -0.189 1.189 10 H -0.220 1.220 11 H -0.193 1.193 12 N -0.170 5.170 13 C -0.108 4.108 14 C 0.031 3.969 15 N -0.203 5.203 16 N -0.157 5.157 17 C -0.057 4.057 18 C -0.070 4.070 19 C -0.094 4.094 20 C -0.164 4.164 21 C -0.055 4.055 22 N -0.209 5.209 23 C -0.035 4.035 24 N -0.144 5.144 25 C -0.052 4.052 26 C 0.069 3.931 27 C -0.190 4.190 28 C -0.223 4.223 29 O -0.377 6.377 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.035 0.965 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.176 0.824 38 H 0.205 0.795 39 H 0.210 0.790 40 H 0.159 0.841 41 H 0.153 0.847 42 H 0.132 0.868 43 H 0.111 0.889 44 H 0.080 0.920 45 H 0.041 0.959 46 H 0.094 0.906 47 H 0.084 0.916 48 H 0.114 0.886 49 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 11.033 -6.258 23.620 26.811 hybrid contribution 0.128 -1.561 -1.939 2.492 sum 11.161 -7.818 21.682 25.608 Atomic orbital electron populations 1.22530 0.99579 0.99100 1.01821 1.18832 0.90569 0.91797 0.84532 0.99309 1.21285 1.31311 1.12948 0.89757 0.90401 1.25804 0.95223 0.95693 1.02286 1.70107 1.37656 1.24427 1.24054 0.85457 0.78772 0.78617 0.77812 1.18943 1.21966 1.19289 1.59170 1.57202 1.03069 0.97550 1.22417 0.97415 0.86659 1.04306 1.22910 0.88404 0.98271 0.87361 1.74723 1.18914 1.16070 1.10550 1.74242 1.19587 1.21825 1.00049 1.22704 0.92434 0.96560 0.93969 1.18458 1.03921 0.97034 0.87548 1.22014 0.94471 0.98864 0.94015 1.22497 1.00200 0.98428 0.95313 1.23644 0.91574 0.89807 1.00463 1.67785 1.12525 1.36711 1.03883 1.22694 0.95027 0.93812 0.91954 1.46213 1.21171 1.37370 1.09646 1.23305 0.80394 0.96254 1.05212 1.21690 0.93709 0.95499 0.82247 1.21740 1.01049 0.95876 1.00369 1.22361 0.94911 1.00729 1.04250 1.86663 1.96656 1.37527 1.16887 0.92362 0.92807 0.95543 0.93137 0.96476 0.88945 0.89617 0.82387 0.79523 0.78955 0.84073 0.84715 0.86770 0.88885 0.92028 0.95948 0.90561 0.91627 0.88647 0.76385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -9.21 8.28 71.98 0.60 -8.62 16 2 C 0.25 13.06 2.21 44.17 0.10 13.16 16 3 H -0.01 -0.70 8.11 -2.39 -0.02 -0.72 16 4 C -0.51 -27.22 7.78 25.60 0.20 -27.02 16 5 H 0.08 3.80 6.83 -2.91 -0.02 3.78 16 6 C 0.01 0.48 5.30 84.65 0.45 0.93 16 7 N -0.92 -55.14 11.32 21.45 0.24 -54.90 16 8 Si 0.97 42.87 29.54 68.60 2.03 44.89 16 9 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 10 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 12 N -0.45 -18.38 4.24 -711.03 -3.01 -21.39 16 13 C 0.04 1.35 8.66 127.69 1.11 2.46 16 14 C 0.39 15.91 6.10 260.12 1.59 17.50 16 15 N -0.36 -17.08 8.80 -58.02 -0.51 -17.59 16 16 N -0.32 -13.62 12.20 -50.80 -0.62 -14.24 16 17 C 0.21 6.94 6.25 136.22 0.85 7.79 16 18 C -0.06 -1.57 5.09 -20.00 -0.10 -1.67 16 19 C -0.07 -0.95 8.81 22.73 0.20 -0.75 16 20 C -0.15 -1.28 10.10 22.32 0.23 -1.05 16 21 C 0.10 1.31 11.17 84.71 0.95 2.26 16 22 N -0.50 -10.93 10.35 -194.76 -2.01 -12.95 16 23 C 0.12 3.19 10.93 85.02 0.93 4.12 16 24 N -0.45 -14.03 2.37 -516.76 -1.22 -15.25 16 25 C 0.07 1.38 5.13 86.38 0.44 1.82 16 26 C 0.11 2.35 1.17 -10.79 -0.01 2.34 16 27 C -0.13 -3.11 7.99 71.98 0.58 -2.53 16 28 C -0.16 -2.11 8.82 71.98 0.63 -1.47 16 29 O -0.57 -18.10 12.01 -148.98 -1.79 -19.89 16 30 H 0.06 3.19 5.10 -2.38 -0.01 3.17 16 31 H 0.05 3.22 6.07 -2.39 -0.01 3.20 16 32 H 0.03 1.32 6.64 -2.39 -0.02 1.31 16 33 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 34 H 0.02 0.63 6.87 -2.39 -0.02 0.62 16 35 H 0.09 3.31 6.26 -2.39 -0.01 3.29 16 36 H 0.09 2.20 7.50 -2.39 -0.02 2.18 16 37 H 0.16 1.47 5.68 -2.92 -0.02 1.45 16 38 H 0.19 -0.02 8.06 -2.91 -0.02 -0.04 16 39 H 0.19 1.03 8.06 -2.91 -0.02 1.01 16 40 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 41 H 0.14 1.57 4.51 -2.38 -0.01 1.56 16 42 H 0.11 1.96 7.50 -2.39 -0.02 1.94 16 43 H 0.09 1.55 8.05 -2.39 -0.02 1.53 16 44 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.02 0.69 6.49 -2.39 -0.02 0.68 16 46 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 48 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.39 11.25 8.89 -74.06 -0.66 10.60 16 Total: -1.00 -80.13 385.48 2.16 -77.97 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.33 Total: 24.07 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 8.73 Total: 9.26 kcal Atomic # 7 Polarization: -129.17 SS G_CDS: -7.14 Total: -136.31 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -1.79 Total: -19.89 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -80.13 2.16 -77.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001541800737.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.572 kcal (2) G-P(sol) polarization free energy of solvation -80.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds