Wall clock time and date at job start Wed Apr 1 2020 04:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47139 * 2 1 4 4 C 1.50705 * 109.47176 * 120.00267 * 2 1 3 5 5 H 1.08001 * 120.00155 * 120.00365 * 4 2 1 6 6 C 1.37878 * 119.99546 * 299.99988 * 4 2 1 7 7 N 1.31513 * 119.99713 * 180.02562 * 6 4 2 8 8 Si 1.86794 * 120.00112 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.47465 * 90.00264 * 8 6 4 10 10 H 1.48501 * 109.47120 * 210.00011 * 8 6 4 11 11 H 1.48496 * 109.47569 * 329.99900 * 8 6 4 12 12 N 1.46909 * 109.47211 * 240.00149 * 2 1 3 13 13 C 1.46896 * 110.99812 * 183.95657 * 12 2 1 14 14 C 1.38402 * 111.00161 * 59.99796 * 12 2 1 15 15 N 1.31380 * 126.36603 * 20.53863 * 14 12 2 16 16 N 1.28516 * 110.07656 * 179.85386 * 15 14 12 17 17 C 1.31262 * 109.93103 * 0.42290 * 16 15 14 18 18 C 1.47859 * 126.46846 * 179.74922 * 17 16 15 19 19 C 1.39994 * 120.55888 * 325.99250 * 18 17 16 20 20 C 1.38356 * 118.29245 * 179.97438 * 19 18 17 21 21 C 1.38346 * 119.30708 * 359.97438 * 20 19 18 22 22 N 1.31908 * 121.07871 * 0.02562 * 21 20 19 23 23 C 1.31716 * 121.87668 * 359.68035 * 22 21 20 24 24 N 1.36464 * 126.37388 * 200.85116 * 14 12 2 25 25 C 1.46500 * 127.16414 * 0.02562 * 24 14 12 26 26 C 1.52996 * 109.47493 * 95.55103 * 25 24 14 27 27 C 1.53000 * 109.47574 * 185.00020 * 26 25 24 28 28 C 1.52998 * 109.47150 * 305.00011 * 26 25 24 29 29 O 1.42904 * 109.47069 * 65.00014 * 26 25 24 30 30 H 1.08998 * 109.46642 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47043 * 299.99861 * 1 2 3 32 32 H 1.08998 * 109.46805 * 60.00088 * 1 2 3 33 33 H 0.97000 * 120.00272 * 179.97438 * 7 6 4 34 34 H 1.08994 * 109.47791 * 66.09102 * 13 12 2 35 35 H 1.09000 * 109.46866 * 186.09201 * 13 12 2 36 36 H 1.08999 * 109.47192 * 306.08800 * 13 12 2 37 37 H 1.08005 * 120.85228 * 359.97438 * 19 18 17 38 38 H 1.07998 * 120.34615 * 180.02562 * 20 19 18 39 39 H 1.07991 * 119.46237 * 180.02562 * 21 20 19 40 40 H 1.07997 * 119.71708 * 180.28161 * 23 22 21 41 41 H 1.09001 * 109.46857 * 215.55227 * 25 24 14 42 42 H 1.09003 * 109.47016 * 335.54961 * 25 24 14 43 43 H 1.08997 * 109.46827 * 59.99597 * 27 26 25 44 44 H 1.08997 * 109.47336 * 180.02562 * 27 26 25 45 45 H 1.09007 * 109.46700 * 300.00073 * 27 26 25 46 46 H 1.09004 * 109.47286 * 60.00100 * 28 26 25 47 47 H 1.09001 * 109.47582 * 179.97438 * 28 26 25 48 48 H 1.08992 * 109.47364 * 300.00062 * 28 26 25 49 49 H 0.96699 * 113.99926 * 180.02562 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1380 -0.8591 3.5565 8 14 0.6247 1.2789 2.6541 9 1 -0.8029 0.8725 2.6998 10 1 0.9758 1.9950 3.9067 11 1 0.8469 2.1764 1.4921 12 7 2.0197 -0.6925 -1.1995 13 6 3.4851 -0.7946 -1.1870 14 6 1.5760 -0.0649 -2.3505 15 7 1.1535 1.1753 -2.4481 16 7 0.8197 1.4333 -3.6621 17 6 1.0002 0.3707 -4.4113 18 6 0.7284 0.2608 -5.8605 19 6 -0.3388 0.9578 -6.4394 20 6 -0.5501 0.8214 -7.7999 21 6 0.2919 0.0088 -8.5379 22 7 1.2900 -0.6362 -7.9654 23 6 1.5353 -0.5341 -6.6753 24 7 1.4902 -0.6210 -3.5938 25 6 1.8449 -1.9896 -3.9775 26 6 0.5908 -2.8657 -3.9594 27 6 0.9797 -4.3190 -4.2381 28 6 -0.0777 -2.7711 -2.5865 29 8 -0.3196 -2.4152 -4.9646 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.9040 -0.5275 4.4375 34 1 3.7973 -1.4430 -0.3685 35 1 3.8282 -1.2130 -2.1332 36 1 3.9172 0.1967 -1.0502 37 1 -0.9806 1.5859 -5.8394 38 1 -1.3635 1.3443 -8.2809 39 1 0.1295 -0.0992 -9.6001 40 1 2.3648 -1.0743 -6.2437 41 1 2.2716 -1.9866 -4.9806 42 1 2.5757 -2.3866 -3.2730 43 1 1.6742 -4.6626 -3.4714 44 1 0.0862 -4.9431 -4.2256 45 1 1.4560 -4.3864 -5.2163 46 1 -0.3549 -1.7357 -2.3879 47 1 -0.9714 -3.3949 -2.5736 48 1 0.6166 -3.1147 -1.8198 49 1 -1.1394 -2.9260 -5.0102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001541800738.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:14 Heat of formation + Delta-G solvation = 98.082549 kcal Electronic energy + Delta-G solvation = -32448.515506 eV Core-core repulsion = 28413.526134 eV Total energy + Delta-G solvation = -4034.989372 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.71305 -40.03372 -38.54540 -37.40424 -34.70547 -33.23213 -32.69857 -32.16282 -31.62024 -30.25302 -28.88129 -27.52009 -27.17591 -25.53899 -24.59666 -24.09250 -23.54780 -21.88485 -21.42114 -20.28211 -19.52187 -17.44475 -17.25282 -16.92306 -16.72678 -16.40494 -16.05084 -15.80687 -15.18373 -14.98232 -14.72787 -14.05411 -14.00230 -13.95228 -13.79468 -13.51923 -13.35398 -13.19308 -12.88933 -12.66165 -12.47418 -12.21402 -12.07323 -11.88407 -11.82666 -11.66463 -11.35582 -11.20588 -11.11641 -10.81700 -10.71327 -10.47478 -10.23381 -10.15964 -10.09059 -9.85928 -9.71402 -9.54187 -9.49197 -9.27419 -8.67142 -8.58987 -7.65244 -6.17198 -4.18494 0.70193 1.14162 2.10491 2.45151 3.14515 3.26610 3.38319 3.44635 3.75339 3.90374 4.07544 4.21678 4.27261 4.35408 4.44843 4.62217 4.70465 4.78770 4.80739 4.88979 4.97398 5.15870 5.20897 5.26676 5.40524 5.42341 5.46242 5.52036 5.64263 5.74612 5.86057 5.89259 5.95401 5.96395 6.01016 6.11396 6.16796 6.37056 6.38916 6.40233 6.44714 6.48039 6.56879 6.80324 6.91076 7.10258 7.39366 7.43977 7.56864 7.77820 7.84724 8.45210 8.82957 9.06669 9.43591 10.94384 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.016389 B = 0.003702 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.073826 B = 7560.702588 C = 8343.518344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.200 3.800 3 H 0.025 0.975 4 C -0.516 4.516 5 H 0.085 0.915 6 C 0.079 3.921 7 N -0.894 5.894 8 Si 0.879 3.121 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.260 1.260 12 N -0.449 5.449 13 C 0.042 3.958 14 C 0.388 3.612 15 N -0.319 5.319 16 N -0.270 5.270 17 C 0.203 3.797 18 C -0.025 4.025 19 C -0.039 4.039 20 C -0.169 4.169 21 C 0.097 3.903 22 N -0.480 5.480 23 C 0.119 3.881 24 N -0.466 5.466 25 C 0.120 3.880 26 C 0.116 3.884 27 C -0.174 4.174 28 C -0.175 4.175 29 O -0.553 6.553 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.039 0.961 33 H 0.266 0.734 34 H 0.099 0.901 35 H 0.045 0.955 36 H 0.037 0.963 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.155 0.845 40 H 0.149 0.851 41 H 0.096 0.904 42 H 0.115 0.885 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.054 0.946 48 H 0.082 0.918 49 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.401 -4.901 -21.686 22.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.095 3.905 3 H 0.043 0.957 4 C -0.554 4.554 5 H 0.103 0.897 6 C -0.124 4.124 7 N -0.532 5.532 8 Si 0.709 3.291 9 H -0.205 1.205 10 H -0.223 1.223 11 H -0.185 1.185 12 N -0.174 5.174 13 C -0.105 4.105 14 C 0.033 3.967 15 N -0.164 5.164 16 N -0.111 5.111 17 C -0.062 4.062 18 C -0.030 4.030 19 C -0.067 4.067 20 C -0.189 4.189 21 C -0.061 4.061 22 N -0.188 5.188 23 C -0.040 4.040 24 N -0.160 5.160 25 C -0.004 4.004 26 C 0.074 3.926 27 C -0.232 4.232 28 C -0.232 4.232 29 O -0.359 6.359 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.118 0.882 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.158 0.842 38 H 0.155 0.845 39 H 0.172 0.828 40 H 0.166 0.834 41 H 0.114 0.886 42 H 0.133 0.867 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.101 0.899 49 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -2.895 -4.081 -21.601 22.173 hybrid contribution -1.125 0.129 0.712 1.338 sum -4.019 -3.952 -20.889 21.636 Atomic orbital electron populations 1.22184 0.97929 1.00793 0.99537 1.19758 0.92035 0.93561 0.85191 0.95750 1.20845 1.32929 1.14002 0.87657 0.89718 1.24805 0.95500 0.96531 0.95601 1.69852 1.45196 1.40131 0.97976 0.86963 0.80724 0.83984 0.77433 1.20460 1.22314 1.18504 1.58938 1.11173 1.48885 0.98419 1.22353 0.84336 1.02088 1.01719 1.22986 1.00222 0.88211 0.85280 1.74804 1.20409 1.10423 1.10727 1.74324 1.17761 1.21492 0.97534 1.22134 1.05067 0.86361 0.92645 1.18272 0.97262 0.99680 0.87757 1.21591 0.94612 0.95672 0.94799 1.22044 1.01509 1.01023 0.94331 1.22777 0.90515 0.92494 1.00284 1.67635 1.18658 1.20973 1.11529 1.22738 0.97380 0.94831 0.89011 1.46086 1.50212 1.11580 1.08088 1.22119 0.96889 0.78502 1.02859 1.21485 0.89564 0.92590 0.88917 1.22414 1.02882 0.95191 1.02744 1.22461 1.01178 1.03424 0.96170 1.86586 1.31833 1.60689 1.56823 0.92788 0.93522 0.94157 0.92388 0.88222 0.93581 0.94380 0.84178 0.84475 0.82784 0.83391 0.88592 0.86715 0.90898 0.91611 0.91681 0.91523 0.92661 0.89930 0.77705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 8.50 37.16 0.32 -3.05 16 2 C 0.20 4.68 1.30 -68.86 -0.09 4.59 16 3 H 0.02 0.63 6.97 -51.93 -0.36 0.27 16 4 C -0.52 -13.57 8.57 -34.44 -0.30 -13.86 16 5 H 0.08 2.33 6.66 -52.49 -0.35 1.98 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 7 N -0.89 -26.16 13.96 55.43 0.77 -25.39 16 8 Si 0.88 21.87 24.37 -169.99 -4.14 17.73 16 9 H -0.28 -6.78 6.87 56.52 0.39 -6.39 16 10 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 11 H -0.26 -6.48 6.53 56.52 0.37 -6.11 16 12 N -0.45 -8.76 4.61 -176.09 -0.81 -9.57 16 13 C 0.04 0.73 8.94 60.06 0.54 1.27 16 14 C 0.39 7.31 4.55 -318.91 -1.45 5.86 16 15 N -0.32 -6.79 9.98 30.31 0.30 -6.49 16 16 N -0.27 -5.26 12.20 32.59 0.40 -4.87 16 17 C 0.20 3.30 7.26 -153.78 -1.12 2.18 16 18 C -0.03 -0.33 4.83 -104.82 -0.51 -0.84 16 19 C -0.04 -0.46 9.92 -38.88 -0.39 -0.84 16 20 C -0.17 -1.54 10.10 -39.50 -0.40 -1.94 16 21 C 0.10 0.91 11.17 -17.48 -0.20 0.72 16 22 N -0.48 -5.61 10.35 -12.91 -0.13 -5.74 16 23 C 0.12 1.45 9.83 -17.12 -0.17 1.28 16 24 N -0.47 -7.17 2.26 -114.69 -0.26 -7.43 16 25 C 0.12 1.39 4.95 -4.04 -0.02 1.37 16 26 C 0.12 1.22 1.18 -90.62 -0.11 1.12 16 27 C -0.17 -1.40 8.82 37.16 0.33 -1.07 16 28 C -0.17 -2.29 8.32 37.16 0.31 -1.98 16 29 O -0.55 -5.91 11.34 -35.23 -0.40 -6.31 16 30 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 32 H 0.04 0.90 6.23 -51.93 -0.32 0.58 16 33 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.10 1.79 6.47 -51.93 -0.34 1.46 16 35 H 0.05 0.64 6.81 -51.93 -0.35 0.29 16 36 H 0.04 0.69 8.12 -51.93 -0.42 0.27 16 37 H 0.14 1.63 8.06 -52.48 -0.42 1.21 16 38 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 40 H 0.15 1.63 5.44 -52.49 -0.29 1.34 16 41 H 0.10 0.96 4.85 -51.93 -0.25 0.71 16 42 H 0.11 1.26 6.72 -51.93 -0.35 0.91 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 1.11 6.60 -51.93 -0.34 0.77 16 47 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 49 H 0.38 2.89 9.05 45.56 0.41 3.30 16 LS Contribution 381.77 15.07 5.75 5.75 Total: -1.00 -32.85 381.77 -7.98 -40.83 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -6.12 Total: 4.60 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -3.34 Total: -3.11 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: 0.27 Total: -59.49 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -0.40 Total: -6.31 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.14 Total: 17.73 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.85 -7.98 -40.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001541800738.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.916 kcal (2) G-P(sol) polarization free energy of solvation -32.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds