Wall clock time and date at job start Wed Apr 1 2020 04:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47139 * 2 1 4 4 C 1.50705 * 109.47176 * 120.00267 * 2 1 3 5 5 H 1.08001 * 120.00155 * 120.00365 * 4 2 1 6 6 C 1.37878 * 119.99546 * 299.99988 * 4 2 1 7 7 N 1.31513 * 119.99713 * 180.02562 * 6 4 2 8 8 Si 1.86794 * 120.00112 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.47465 * 90.00264 * 8 6 4 10 10 H 1.48501 * 109.47120 * 210.00011 * 8 6 4 11 11 H 1.48496 * 109.47569 * 329.99900 * 8 6 4 12 12 N 1.46909 * 109.47211 * 240.00149 * 2 1 3 13 13 C 1.46896 * 110.99812 * 183.95657 * 12 2 1 14 14 C 1.38402 * 111.00161 * 59.99796 * 12 2 1 15 15 N 1.31380 * 126.36603 * 20.53863 * 14 12 2 16 16 N 1.28516 * 110.07656 * 179.85386 * 15 14 12 17 17 C 1.31262 * 109.93103 * 0.42290 * 16 15 14 18 18 C 1.47859 * 126.46846 * 179.74922 * 17 16 15 19 19 C 1.39994 * 120.55888 * 325.99250 * 18 17 16 20 20 C 1.38356 * 118.29245 * 179.97438 * 19 18 17 21 21 C 1.38346 * 119.30708 * 359.97438 * 20 19 18 22 22 N 1.31908 * 121.07871 * 0.02562 * 21 20 19 23 23 C 1.31716 * 121.87668 * 359.68035 * 22 21 20 24 24 N 1.36464 * 126.37388 * 200.85116 * 14 12 2 25 25 C 1.46500 * 127.16414 * 0.02562 * 24 14 12 26 26 C 1.52996 * 109.47493 * 95.55103 * 25 24 14 27 27 C 1.53000 * 109.47574 * 185.00020 * 26 25 24 28 28 C 1.52998 * 109.47150 * 305.00011 * 26 25 24 29 29 O 1.42904 * 109.47069 * 65.00014 * 26 25 24 30 30 H 1.08998 * 109.46642 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47043 * 299.99861 * 1 2 3 32 32 H 1.08998 * 109.46805 * 60.00088 * 1 2 3 33 33 H 0.97000 * 120.00272 * 179.97438 * 7 6 4 34 34 H 1.08994 * 109.47791 * 66.09102 * 13 12 2 35 35 H 1.09000 * 109.46866 * 186.09201 * 13 12 2 36 36 H 1.08999 * 109.47192 * 306.08800 * 13 12 2 37 37 H 1.08005 * 120.85228 * 359.97438 * 19 18 17 38 38 H 1.07998 * 120.34615 * 180.02562 * 20 19 18 39 39 H 1.07991 * 119.46237 * 180.02562 * 21 20 19 40 40 H 1.07997 * 119.71708 * 180.28161 * 23 22 21 41 41 H 1.09001 * 109.46857 * 215.55227 * 25 24 14 42 42 H 1.09003 * 109.47016 * 335.54961 * 25 24 14 43 43 H 1.08997 * 109.46827 * 59.99597 * 27 26 25 44 44 H 1.08997 * 109.47336 * 180.02562 * 27 26 25 45 45 H 1.09007 * 109.46700 * 300.00073 * 27 26 25 46 46 H 1.09004 * 109.47286 * 60.00100 * 28 26 25 47 47 H 1.09001 * 109.47582 * 179.97438 * 28 26 25 48 48 H 1.08992 * 109.47364 * 300.00062 * 28 26 25 49 49 H 0.96699 * 113.99926 * 180.02562 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1380 -0.8591 3.5565 8 14 0.6247 1.2789 2.6541 9 1 -0.8029 0.8725 2.6998 10 1 0.9758 1.9950 3.9067 11 1 0.8469 2.1764 1.4921 12 7 2.0197 -0.6925 -1.1995 13 6 3.4851 -0.7946 -1.1870 14 6 1.5760 -0.0649 -2.3505 15 7 1.1535 1.1753 -2.4481 16 7 0.8197 1.4333 -3.6621 17 6 1.0002 0.3707 -4.4113 18 6 0.7284 0.2608 -5.8605 19 6 -0.3388 0.9578 -6.4394 20 6 -0.5501 0.8214 -7.7999 21 6 0.2919 0.0088 -8.5379 22 7 1.2900 -0.6362 -7.9654 23 6 1.5353 -0.5341 -6.6753 24 7 1.4902 -0.6210 -3.5938 25 6 1.8449 -1.9896 -3.9775 26 6 0.5908 -2.8657 -3.9594 27 6 0.9797 -4.3190 -4.2381 28 6 -0.0777 -2.7711 -2.5865 29 8 -0.3196 -2.4152 -4.9646 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.9040 -0.5275 4.4375 34 1 3.7973 -1.4430 -0.3685 35 1 3.8282 -1.2130 -2.1332 36 1 3.9172 0.1967 -1.0502 37 1 -0.9806 1.5859 -5.8394 38 1 -1.3635 1.3443 -8.2809 39 1 0.1295 -0.0992 -9.6001 40 1 2.3648 -1.0743 -6.2437 41 1 2.2716 -1.9866 -4.9806 42 1 2.5757 -2.3866 -3.2730 43 1 1.6742 -4.6626 -3.4714 44 1 0.0862 -4.9431 -4.2256 45 1 1.4560 -4.3864 -5.2163 46 1 -0.3549 -1.7357 -2.3879 47 1 -0.9714 -3.3949 -2.5736 48 1 0.6166 -3.1147 -1.8198 49 1 -1.1394 -2.9260 -5.0102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001541800738.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:13 Heat of formation + Delta-G solvation = 74.858078 kcal Electronic energy + Delta-G solvation = -32449.522594 eV Core-core repulsion = 28413.526134 eV Total energy + Delta-G solvation = -4035.996461 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.04724 -40.90039 -39.44500 -39.03589 -35.85529 -34.91185 -33.96010 -33.04504 -32.70496 -31.99788 -30.19339 -28.57454 -28.06342 -27.28216 -26.24930 -25.12201 -24.47020 -23.49090 -22.47721 -21.30431 -21.07752 -19.00608 -18.41102 -18.12387 -17.71992 -17.61385 -17.12635 -17.08107 -16.59452 -16.43048 -15.99265 -15.51356 -15.21594 -14.83922 -14.80299 -14.78550 -14.64039 -14.34723 -14.16217 -14.04565 -13.72092 -13.58761 -13.20035 -13.05288 -12.89946 -12.80536 -12.65875 -12.63813 -12.53153 -12.44055 -12.22742 -12.16994 -11.82890 -11.54399 -11.32006 -11.17122 -11.00396 -10.95171 -10.78800 -10.59676 -10.42024 -9.95123 -9.12029 -8.34034 -6.36744 -0.22837 0.30246 0.86009 1.21405 1.25495 1.33934 1.43826 1.79688 2.27253 2.76501 2.88914 3.01910 3.07044 3.11256 3.34620 3.55723 3.77422 3.85927 3.89521 3.91677 3.98723 4.04222 4.07867 4.32641 4.37975 4.44272 4.47566 4.49405 4.53881 4.64296 4.66331 4.72999 4.74755 4.78946 4.88434 4.92279 4.96362 5.02356 5.04377 5.14682 5.21248 5.22866 5.24294 5.34110 5.43890 5.58392 5.70865 5.77998 6.12345 6.50135 6.67626 6.76953 6.95345 7.27567 7.68313 8.80495 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.016389 B = 0.003702 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.073826 B = 7560.702588 C = 8343.518344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.210 3.790 3 H 0.000 1.000 4 C -0.506 4.506 5 H 0.067 0.933 6 C 0.035 3.965 7 N -0.932 5.932 8 Si 0.925 3.075 9 H -0.268 1.268 10 H -0.293 1.293 11 H -0.265 1.265 12 N -0.443 5.443 13 C 0.042 3.958 14 C 0.378 3.622 15 N -0.361 5.361 16 N -0.311 5.311 17 C 0.227 3.773 18 C -0.051 4.051 19 C -0.049 4.049 20 C -0.157 4.157 21 C 0.104 3.896 22 N -0.494 5.494 23 C 0.122 3.878 24 N -0.454 5.454 25 C 0.107 3.893 26 C 0.126 3.874 27 C -0.166 4.166 28 C -0.169 4.169 29 O -0.563 6.563 30 H 0.056 0.944 31 H 0.037 0.963 32 H 0.041 0.959 33 H 0.268 0.732 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.023 0.977 37 H 0.134 0.866 38 H 0.172 0.828 39 H 0.191 0.809 40 H 0.156 0.844 41 H 0.118 0.882 42 H 0.122 0.878 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.027 0.973 47 H 0.070 0.930 48 H 0.066 0.934 49 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.224 -5.976 -25.391 26.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.103 3.897 3 H 0.017 0.983 4 C -0.544 4.544 5 H 0.085 0.915 6 C -0.165 4.165 7 N -0.572 5.572 8 Si 0.754 3.246 9 H -0.194 1.194 10 H -0.220 1.220 11 H -0.190 1.190 12 N -0.168 5.168 13 C -0.104 4.104 14 C 0.021 3.979 15 N -0.206 5.206 16 N -0.150 5.150 17 C -0.040 4.040 18 C -0.056 4.056 19 C -0.076 4.076 20 C -0.176 4.176 21 C -0.053 4.053 22 N -0.202 5.202 23 C -0.037 4.037 24 N -0.147 5.147 25 C -0.014 4.014 26 C 0.084 3.916 27 C -0.223 4.223 28 C -0.226 4.226 29 O -0.371 6.371 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.042 0.958 37 H 0.152 0.848 38 H 0.190 0.810 39 H 0.208 0.792 40 H 0.172 0.828 41 H 0.136 0.864 42 H 0.140 0.860 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.046 0.954 47 H 0.089 0.911 48 H 0.085 0.915 49 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -3.726 -5.176 -25.334 26.124 hybrid contribution -0.889 0.424 1.604 1.882 sum -4.616 -4.752 -23.730 24.637 Atomic orbital electron populations 1.22026 0.97411 1.00789 0.99023 1.19394 0.92280 0.92048 0.85943 0.98261 1.21014 1.31642 1.13029 0.88708 0.91488 1.25387 0.96760 0.98709 0.95605 1.69942 1.46983 1.41781 0.98475 0.86204 0.79919 0.81384 0.77080 1.19450 1.21992 1.18993 1.58826 1.12188 1.48131 0.97630 1.22398 0.83244 1.01309 1.03481 1.22712 1.00994 0.88189 0.86004 1.74664 1.21711 1.12062 1.12161 1.74228 1.20204 1.23214 0.97390 1.22686 1.02227 0.85411 0.93662 1.18327 0.99165 1.01986 0.86147 1.21734 0.94283 0.95448 0.96185 1.22384 1.01966 1.00311 0.92929 1.23451 0.89094 0.90846 1.01910 1.67722 1.19707 1.21780 1.11015 1.22774 0.97240 0.94394 0.89245 1.46169 1.49304 1.12681 1.06560 1.22553 0.98006 0.76684 1.04176 1.21361 0.88795 0.93951 0.87466 1.22340 1.03612 0.92957 1.03435 1.22391 1.01727 1.01011 0.97516 1.86561 1.32664 1.61476 1.56364 0.92452 0.94494 0.94048 0.92235 0.89149 0.89761 0.95794 0.84842 0.81018 0.79178 0.82756 0.86413 0.85980 0.90660 0.90399 0.90455 0.95356 0.91147 0.91466 0.76147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.31 8.50 71.98 0.61 -5.70 16 2 C 0.21 10.11 1.30 44.17 0.06 10.17 16 3 H 0.00 -0.01 6.97 -2.39 -0.02 -0.03 16 4 C -0.51 -27.31 8.57 25.60 0.22 -27.09 16 5 H 0.07 3.81 6.66 -2.91 -0.02 3.79 16 6 C 0.03 1.97 5.45 84.66 0.46 2.43 16 7 N -0.93 -55.73 13.96 21.45 0.30 -55.43 16 8 Si 0.93 45.95 24.37 68.60 1.67 47.62 16 9 H -0.27 -12.81 6.87 99.48 0.68 -12.13 16 10 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 11 H -0.26 -13.27 6.53 99.48 0.65 -12.62 16 12 N -0.44 -17.65 4.61 -711.02 -3.28 -20.93 16 13 C 0.04 1.49 8.94 127.69 1.14 2.63 16 14 C 0.38 14.47 4.55 260.13 1.18 15.65 16 15 N -0.36 -15.88 9.98 -58.02 -0.58 -16.45 16 16 N -0.31 -12.37 12.20 -50.80 -0.62 -12.99 16 17 C 0.23 7.30 7.26 136.22 0.99 8.29 16 18 C -0.05 -1.30 4.83 -19.99 -0.10 -1.39 16 19 C -0.05 -1.05 9.92 22.72 0.23 -0.83 16 20 C -0.16 -2.26 10.10 22.32 0.23 -2.04 16 21 C 0.10 1.52 11.17 84.71 0.95 2.46 16 22 N -0.49 -9.85 10.35 -194.76 -2.02 -11.86 16 23 C 0.12 2.66 9.83 85.02 0.84 3.49 16 24 N -0.45 -13.78 2.26 -516.76 -1.17 -14.95 16 25 C 0.11 2.31 4.95 86.38 0.43 2.74 16 26 C 0.13 2.41 1.18 -10.80 -0.01 2.39 16 27 C -0.17 -2.15 8.82 71.98 0.63 -1.51 16 28 C -0.17 -4.29 8.32 71.98 0.60 -3.70 16 29 O -0.56 -10.69 11.34 -148.98 -1.69 -12.38 16 30 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.04 1.77 3.27 -2.39 -0.01 1.76 16 32 H 0.04 1.91 6.23 -2.39 -0.01 1.89 16 33 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 34 H 0.09 3.33 6.47 -2.39 -0.02 3.32 16 35 H 0.08 2.27 6.81 -2.39 -0.02 2.25 16 36 H 0.02 0.89 8.12 -2.39 -0.02 0.87 16 37 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 38 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 39 H 0.19 1.36 8.06 -2.92 -0.02 1.33 16 40 H 0.16 3.00 5.44 -2.91 -0.02 2.98 16 41 H 0.12 2.04 4.85 -2.39 -0.01 2.03 16 42 H 0.12 2.44 6.72 -2.39 -0.02 2.43 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 46 H 0.03 0.93 6.60 -2.38 -0.02 0.92 16 47 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 48 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.39 4.96 9.05 -74.06 -0.67 4.29 16 Total: -1.00 -73.95 381.77 1.31 -72.64 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.24 Total: 16.72 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 8.45 Total: 8.01 kcal Atomic # 7 Polarization: -125.25 SS G_CDS: -7.36 Total: -132.62 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: -1.69 Total: -12.38 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.67 Total: 47.62 kcal Total: -73.95 1.31 -72.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001541800738.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.493 kcal (2) G-P(sol) polarization free energy of solvation -73.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds