Wall clock time and date at job start Wed Apr 1 2020 04:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42897 * 109.47104 * 2 1 4 4 C 1.35677 * 117.00060 * 183.75905 * 3 2 1 5 5 N 1.32276 * 119.68332 * 0.40287 * 4 3 2 6 6 C 1.31932 * 121.64781 * 180.02562 * 5 4 3 7 7 C 1.38091 * 120.83464 * 359.97438 * 6 5 4 8 8 C 1.38778 * 119.28495 * 0.02562 * 7 6 5 9 9 C 1.38418 * 118.48784 * 359.97438 * 8 7 6 10 10 C 1.50706 * 120.44585 * 180.02562 * 9 8 7 11 11 N 1.46494 * 109.47136 * 268.73786 * 10 9 8 12 12 C 1.36736 * 127.13937 * 264.23040 * 11 10 9 13 13 C 1.50709 * 126.34552 * 359.94344 * 12 11 10 14 14 N 1.30293 * 107.31065 * 179.97438 * 12 11 10 15 15 N 1.28534 * 110.05272 * 0.02562 * 14 12 11 16 16 C 1.31220 * 109.85707 * 359.74086 * 15 14 12 17 17 N 1.38585 * 126.47268 * 180.26453 * 16 15 14 18 18 C 1.46894 * 110.99643 * 257.87883 * 17 16 15 19 19 C 1.46896 * 110.99713 * 21.83245 * 17 16 15 20 20 H 1.09005 * 109.47099 * 302.12012 * 19 17 16 21 21 C 1.53000 * 109.47198 * 62.12068 * 19 17 16 22 22 C 1.50702 * 109.46822 * 182.12323 * 19 17 16 23 23 H 1.08004 * 119.99943 * 354.35182 * 22 19 17 24 24 C 1.37874 * 120.00182 * 174.35901 * 22 19 17 25 25 N 1.31524 * 120.00029 * 359.97438 * 24 22 19 26 26 Si 1.86804 * 120.00291 * 179.97438 * 24 22 19 27 27 H 1.48500 * 109.46765 * 359.97438 * 26 24 22 28 28 H 1.48505 * 109.46856 * 119.99801 * 26 24 22 29 29 H 1.48493 * 109.47074 * 239.99958 * 26 24 22 30 30 H 1.09000 * 109.47034 * 184.47869 * 1 2 3 31 31 H 1.08994 * 109.47255 * 304.47427 * 1 2 3 32 32 H 1.09004 * 109.47279 * 64.47729 * 1 2 3 33 33 H 1.09000 * 109.46830 * 239.99677 * 2 1 3 34 34 H 1.08996 * 109.47071 * 119.99686 * 2 1 3 35 35 H 1.08007 * 119.58276 * 180.02562 * 6 5 4 36 36 H 1.07997 * 120.35409 * 179.74255 * 7 6 5 37 37 H 1.08001 * 120.75396 * 179.97438 * 8 7 6 38 38 H 1.09002 * 109.46764 * 28.73656 * 10 9 8 39 39 H 1.08994 * 109.47218 * 148.73295 * 10 9 8 40 40 H 1.09000 * 109.46614 * 89.99779 * 13 12 11 41 41 H 1.08997 * 109.47110 * 210.00100 * 13 12 11 42 42 H 1.09004 * 109.46765 * 330.00165 * 13 12 11 43 43 H 1.09000 * 109.47330 * 66.73008 * 18 17 16 44 44 H 1.08997 * 109.47332 * 186.73118 * 18 17 16 45 45 H 1.08997 * 109.47380 * 306.73360 * 18 17 16 46 46 H 1.09005 * 109.46730 * 179.97438 * 21 19 17 47 47 H 1.09001 * 109.46995 * 299.99401 * 21 19 17 48 48 H 1.08995 * 109.47233 * 60.00079 * 21 19 17 49 49 H 0.96993 * 120.00003 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3490 1.5259 -0.0793 5 7 4.1462 0.4735 -0.1598 6 6 5.4569 0.6022 -0.2380 7 6 6.0466 1.8509 -0.2390 8 6 5.2446 2.9805 -0.1559 9 6 3.8731 2.8119 -0.0751 10 6 2.9608 4.0080 0.0163 11 7 2.7271 4.3375 1.4244 12 6 1.6694 3.9484 2.1987 13 6 0.5096 3.0913 1.7611 14 7 1.8496 4.4567 3.3848 15 7 2.9406 5.1357 3.4123 16 6 3.5224 5.0920 2.2369 17 7 4.7176 5.6997 1.8863 18 6 4.4778 6.9261 1.1142 19 6 5.5356 5.9770 3.0745 20 1 4.9747 6.6102 3.7620 21 6 5.8903 4.6602 3.7681 22 6 6.8007 6.6831 2.6597 23 1 7.0226 6.8226 1.6119 24 6 7.6749 7.1508 3.6177 25 7 7.4046 6.9812 4.8936 26 14 9.2435 8.0254 3.1036 27 1 9.3130 8.0866 1.6215 28 1 9.2460 9.4034 3.6571 29 1 10.4185 7.2809 3.6234 30 1 -0.3633 -1.0245 0.0802 31 1 -0.3633 0.5817 0.8471 32 1 -0.3634 0.4428 -0.9274 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 6.0764 -0.2801 -0.3029 36 1 7.1206 1.9472 -0.2991 37 1 5.6807 3.9685 -0.1543 38 1 3.4251 4.8581 -0.4836 39 1 2.0106 3.7778 -0.4656 40 1 0.7465 2.0420 1.9376 41 1 -0.3789 3.3640 2.3305 42 1 0.3227 3.2478 0.6987 43 1 3.9986 7.6690 1.7518 44 1 5.4276 7.3180 0.7503 45 1 3.8292 6.7015 0.2675 46 1 6.4976 4.8661 4.6496 47 1 4.9752 4.1496 4.0682 48 1 6.4511 4.0270 3.0807 49 1 8.0195 7.3106 5.5676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548009384.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:58 Heat of formation + Delta-G solvation = 73.475528 kcal Electronic energy + Delta-G solvation = -32163.221627 eV Core-core repulsion = 28127.165215 eV Total energy + Delta-G solvation = -4036.056412 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.90365 -41.67048 -39.01388 -38.78561 -36.63925 -34.85995 -33.51584 -33.04065 -32.49198 -31.29617 -31.04507 -28.84342 -27.79101 -27.13370 -25.97084 -25.16378 -23.82250 -23.38101 -23.08648 -21.58352 -21.07783 -19.45470 -18.52309 -17.93532 -17.82464 -17.65765 -17.18293 -16.99320 -16.38739 -16.30574 -15.68414 -15.40927 -15.29557 -14.99837 -14.82606 -14.64590 -14.29823 -14.11765 -14.01396 -13.66420 -13.54256 -13.31323 -13.29937 -13.20776 -13.01441 -12.88209 -12.79011 -12.65812 -12.44109 -12.33031 -12.20997 -12.13880 -12.03605 -11.63981 -11.43589 -11.25102 -11.04704 -10.83846 -10.59310 -10.55215 -10.22282 -9.48041 -9.12555 -8.11962 -6.25862 -0.02948 0.31705 0.89936 1.44672 1.46137 1.50213 1.59503 1.93905 2.01858 2.43341 2.75469 3.09525 3.20570 3.28191 3.54686 3.62848 3.73247 4.00300 4.06742 4.13686 4.15614 4.17303 4.23386 4.27560 4.48151 4.51874 4.58197 4.59543 4.65554 4.71026 4.78807 4.83501 4.89935 4.96109 4.97644 5.03268 5.05008 5.08817 5.15078 5.17429 5.30157 5.32408 5.46353 5.50691 5.58182 5.68696 5.90480 6.01693 6.15611 6.22783 6.64044 6.79794 6.86627 7.43437 7.90442 8.97052 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.014116 B = 0.003793 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.040866 B = 7380.666669 C = 8531.199543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.064 3.936 3 O -0.304 6.304 4 C 0.329 3.671 5 N -0.558 5.558 6 C 0.142 3.858 7 C -0.215 4.215 8 C -0.015 4.015 9 C -0.198 4.198 10 C 0.168 3.832 11 N -0.468 5.468 12 C 0.180 3.820 13 C -0.048 4.048 14 N -0.342 5.342 15 N -0.370 5.370 16 C 0.367 3.633 17 N -0.451 5.451 18 C 0.044 3.956 19 C 0.243 3.757 20 H -0.022 1.022 21 C -0.104 4.104 22 C -0.519 4.519 23 H 0.080 0.920 24 C 0.011 3.989 25 N -0.923 5.923 26 Si 0.968 3.032 27 H -0.254 1.254 28 H -0.286 1.286 29 H -0.284 1.284 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.189 0.811 36 H 0.158 0.842 37 H 0.146 0.854 38 H 0.114 0.886 39 H 0.131 0.869 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.010 0.990 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.050 0.950 47 H 0.006 0.994 48 H 0.033 0.967 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.690 -13.609 -18.324 25.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.011 4.011 3 O -0.211 6.211 4 C 0.150 3.850 5 N -0.282 5.282 6 C -0.013 4.013 7 C -0.235 4.235 8 C -0.041 4.041 9 C -0.202 4.202 10 C 0.046 3.954 11 N -0.163 5.163 12 C -0.089 4.089 13 C -0.107 4.107 14 N -0.181 5.181 15 N -0.213 5.213 16 C 0.010 3.990 17 N -0.176 5.176 18 C -0.103 4.103 19 C 0.137 3.863 20 H -0.005 1.005 21 C -0.163 4.163 22 C -0.557 4.557 23 H 0.098 0.902 24 C -0.189 4.189 25 N -0.562 5.562 26 Si 0.793 3.207 27 H -0.177 1.177 28 H -0.213 1.213 29 H -0.210 1.210 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.206 0.794 36 H 0.176 0.824 37 H 0.164 0.836 38 H 0.132 0.868 39 H 0.148 0.852 40 H 0.106 0.894 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.029 0.971 44 H 0.115 0.885 45 H 0.100 0.900 46 H 0.069 0.931 47 H 0.025 0.975 48 H 0.052 0.948 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.230 -14.180 -16.998 24.822 hybrid contribution 1.479 1.298 -0.091 1.970 sum -9.751 -12.881 -17.090 23.518 Atomic orbital electron populations 1.21897 0.90622 1.04227 1.03892 1.22755 0.96403 0.80118 1.01861 1.86217 1.16052 1.31827 1.87038 1.19696 0.84918 0.89294 0.91141 1.67423 1.07475 1.32773 1.20546 1.22980 0.89006 0.98493 0.90814 1.22296 1.02753 0.92827 1.05577 1.21708 0.91766 1.01013 0.89614 1.19921 0.95297 0.92873 1.12081 1.20674 1.01355 0.96082 0.77273 1.46487 1.18516 1.38729 1.12551 1.25597 0.93507 1.01968 0.87787 1.20370 0.90527 0.96552 1.03232 1.73860 1.12042 1.13023 1.19185 1.74637 1.04643 1.21540 1.20508 1.22932 0.91719 0.97099 0.87280 1.59147 1.07052 1.26168 1.25204 1.22361 1.03170 0.88497 0.96232 1.18907 0.90578 0.92693 0.84161 1.00465 1.21463 0.97587 0.97219 1.00027 1.21367 1.04185 1.36291 0.93857 0.90232 1.25825 1.01632 0.96729 0.94679 1.70139 1.38068 1.47034 1.00989 0.85355 0.78624 0.77546 0.79178 1.17718 1.21252 1.21042 0.88814 0.91105 0.90837 0.91615 0.93063 0.79424 0.82433 0.83625 0.86827 0.85155 0.89425 0.88285 0.87922 0.97069 0.88460 0.90016 0.93062 0.97522 0.94827 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.28 71.98 0.74 -0.70 16 2 C 0.06 1.02 6.07 71.98 0.44 1.46 16 3 O -0.30 -6.18 6.90 -89.95 -0.62 -6.80 16 4 C 0.33 8.13 7.47 84.78 0.63 8.77 16 5 N -0.56 -13.60 9.17 -308.93 -2.83 -16.43 16 6 C 0.14 2.99 11.18 84.64 0.95 3.94 16 7 C -0.21 -4.77 10.11 22.36 0.23 -4.54 16 8 C -0.02 -0.39 9.85 22.44 0.22 -0.17 16 9 C -0.20 -5.03 5.49 -19.67 -0.11 -5.14 16 10 C 0.17 3.96 5.98 85.64 0.51 4.48 16 11 N -0.47 -15.40 2.79 -518.90 -1.45 -16.85 16 12 C 0.18 6.02 8.07 137.64 1.11 7.13 16 13 C -0.05 -1.00 8.90 71.24 0.63 -0.36 16 14 N -0.34 -15.00 12.18 -49.53 -0.60 -15.61 16 15 N -0.37 -18.37 10.21 -58.00 -0.59 -18.96 16 16 C 0.37 15.59 6.00 260.11 1.56 17.15 16 17 N -0.45 -19.12 4.66 -711.01 -3.31 -22.44 16 18 C 0.04 1.61 9.07 127.69 1.16 2.77 16 19 C 0.24 12.76 1.65 44.17 0.07 12.83 16 20 H -0.02 -1.40 7.83 -2.38 -0.02 -1.42 16 21 C -0.10 -5.64 8.90 71.98 0.64 -5.00 16 22 C -0.52 -27.23 7.75 25.60 0.20 -27.03 16 23 H 0.08 3.87 6.48 -2.91 -0.02 3.85 16 24 C 0.01 0.57 5.33 84.65 0.45 1.02 16 25 N -0.92 -54.57 11.75 21.45 0.25 -54.32 16 26 Si 0.97 42.22 29.54 68.60 2.03 44.24 16 27 H -0.25 -10.20 7.11 99.48 0.71 -9.50 16 28 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 29 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 30 H 0.09 0.62 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.69 7.02 -2.39 -0.02 0.67 16 32 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.07 1.05 8.00 -2.39 -0.02 1.03 16 34 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.19 2.62 8.06 -2.91 -0.02 2.59 16 36 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 37 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 38 H 0.11 2.39 6.68 -2.39 -0.02 2.38 16 39 H 0.13 2.30 6.54 -2.39 -0.02 2.28 16 40 H 0.09 1.75 6.31 -2.39 -0.02 1.74 16 41 H 0.10 1.81 8.14 -2.39 -0.02 1.80 16 42 H 0.10 1.54 7.04 -2.38 -0.02 1.52 16 43 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.10 3.42 6.33 -2.39 -0.02 3.41 16 45 H 0.08 2.28 6.71 -2.39 -0.02 2.26 16 46 H 0.05 3.01 6.53 -2.38 -0.02 2.99 16 47 H 0.01 0.32 6.46 -2.39 -0.02 0.31 16 48 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -76.56 393.88 3.27 -73.30 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.96 Total: 17.28 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: 9.43 Total: 16.59 kcal Atomic # 7 Polarization: -136.07 SS G_CDS: -8.54 Total: -144.60 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.62 Total: -6.80 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.24 kcal Total: -76.56 3.27 -73.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548009384.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.771 kcal (2) G-P(sol) polarization free energy of solvation -76.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds