Wall clock time and date at job start Wed Apr 1 2020 03:04:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53001 * 109.47295 * 2 1
4 4 C 1.53003 * 109.46731 * 119.99843 * 2 1 3
5 5 N 1.46906 * 109.46894 * 178.41619 * 4 2 1
6 6 C 1.46894 * 110.99854 * 285.89640 * 5 4 2
7 7 C 1.50702 * 109.46933 * 75.80358 * 6 5 4
8 8 H 1.07995 * 120.00181 * 5.36888 * 7 6 5
9 9 C 1.37883 * 120.00152 * 185.37197 * 7 6 5
10 10 N 1.31515 * 119.99814 * 359.97438 * 9 7 6
11 11 Si 1.86798 * 120.00019 * 179.97438 * 9 7 6
12 12 H 1.48500 * 109.47106 * 59.99942 * 11 9 7
13 13 H 1.48506 * 109.46976 * 179.97438 * 11 9 7
14 14 H 1.48500 * 109.47210 * 299.99634 * 11 9 7
15 15 C 1.46904 * 111.00014 * 161.94650 * 5 4 2
16 16 C 1.52999 * 109.47132 * 287.40616 * 15 5 4
17 17 H 1.08996 * 109.47336 * 58.05895 * 16 15 5
18 18 O 1.42900 * 109.47050 * 298.06001 * 16 15 5
19 19 C 1.50696 * 109.47046 * 178.06287 * 16 15 5
20 20 C 1.38331 * 119.94511 * 85.00066 * 19 16 15
21 21 C 1.38294 * 120.24042 * 179.97438 * 20 19 16
22 22 C 1.38052 * 120.11610 * 359.97350 * 21 20 19
23 23 C 1.39282 * 119.87994 * 0.02562 * 22 21 20
24 24 C 1.48466 * 120.11632 * 179.97438 * 23 22 21
25 25 N 1.34047 * 126.67261 * 179.68918 * 24 23 22
26 26 N 1.28984 * 107.26663 * 179.84062 * 25 24 23
27 27 N 1.28732 * 108.94594 * 0.42897 * 26 25 24
28 28 H 0.96999 * 125.34363 * 179.72631 * 27 26 25
29 29 N 1.28878 * 109.31532 * 359.72694 * 27 26 25
30 30 C 1.38016 * 119.93871 * 264.97202 * 19 16 15
31 31 H 1.08996 * 109.47086 * 300.00524 * 1 2 3
32 32 H 1.08996 * 109.46494 * 60.00418 * 1 2 3
33 33 H 1.09004 * 109.47175 * 180.02562 * 1 2 3
34 34 H 1.08994 * 109.47553 * 239.99240 * 2 1 3
35 35 H 1.08997 * 109.47298 * 184.22851 * 3 2 1
36 36 H 1.09000 * 109.46644 * 304.22558 * 3 2 1
37 37 H 1.08996 * 109.47296 * 64.22498 * 3 2 1
38 38 H 1.09001 * 109.47619 * 58.41281 * 4 2 1
39 39 H 1.08998 * 109.46896 * 298.40967 * 4 2 1
40 40 H 1.08999 * 109.47413 * 195.80168 * 6 5 4
41 41 H 1.09006 * 109.47285 * 315.80678 * 6 5 4
42 42 H 0.96997 * 119.99713 * 180.02562 * 10 9 7
43 43 H 1.08999 * 109.47332 * 167.40108 * 15 5 4
44 44 H 1.09000 * 109.46942 * 47.40096 * 15 5 4
45 45 H 0.96699 * 114.00280 * 300.00418 * 18 16 15
46 46 H 1.07997 * 119.87894 * 359.94781 * 20 19 16
47 47 H 1.07995 * 119.94527 * 179.97438 * 21 20 19
48 48 H 1.07999 * 120.06213 * 179.74220 * 22 21 20
49 49 H 1.07997 * 120.05544 * 0.02562 * 30 19 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0399 -0.7212 1.2493
5 7 3.5085 -0.7545 1.2304
6 6 4.0003 -1.7295 0.2479
7 6 3.8499 -1.1631 -1.1405
8 1 3.5125 -0.1461 -1.2752
9 6 4.1428 -1.9434 -2.2389
10 7 4.5541 -3.1818 -2.0749
11 14 3.9556 -1.2416 -3.9599
12 1 4.8428 -0.0604 -4.1120
13 1 4.3312 -2.2740 -4.9591
14 1 2.5447 -0.8322 -4.1768
15 6 4.0460 -1.0380 2.5678
16 6 3.8652 0.1908 3.4612
17 1 2.8080 0.4513 3.5113
18 8 4.6007 1.2882 2.9163
19 6 4.3732 -0.1160 4.8463
20 6 5.7171 0.0338 5.1378
21 6 6.1899 -0.2456 6.4071
22 6 5.3216 -0.6752 7.3906
23 6 3.9674 -0.8277 7.1025
24 6 3.0291 -1.2900 8.1561
25 7 1.7080 -1.4756 8.0262
26 7 1.2646 -1.8830 9.1669
27 7 2.2460 -1.9494 9.9973
28 1 2.1785 -2.2250 10.9248
29 7 3.3323 -1.5922 9.4028
30 6 3.4966 -0.5454 5.8221
31 1 -0.3633 0.5139 0.8899
32 1 -0.3632 0.5138 -0.8900
33 1 -0.3634 -1.0277 0.0005
34 1 1.8934 -0.5139 -0.8898
35 1 3.1274 1.4434 -0.0758
36 1 1.6162 1.9777 -0.8497
37 1 1.7399 1.9340 0.9254
38 1 1.6536 -1.7404 1.2637
39 1 1.7000 -0.1912 2.1390
40 1 5.0517 -1.9419 0.4416
41 1 3.4226 -2.6503 0.3292
42 1 4.7605 -3.7306 -2.8476
43 1 5.1064 -1.2778 2.4900
44 1 3.5130 -1.8841 3.0017
45 1 5.5512 1.1265 2.8423
46 1 6.3997 0.3696 4.3713
47 1 7.2401 -0.1274 6.6293
48 1 5.6924 -0.8971 8.3804
49 1 2.4476 -0.6619 5.5934
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001574205793.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:04:03
Heat of formation + Delta-G solvation = 100.157517 kcal
Electronic energy + Delta-G solvation = -30213.479415 eV
Core-core repulsion = 26178.580020 eV
Total energy + Delta-G solvation = -4034.899395 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-44.71700 -39.85518 -37.83698 -36.26369 -34.64330 -33.77106 -33.48819 -32.53556
-31.64366 -30.69996 -28.33875 -26.65083 -26.32616 -25.23937 -24.73389 -24.58093
-22.74613 -22.20486 -20.79975 -20.50456 -19.44384 -18.96717 -17.53065 -17.40462
-16.48129 -15.95113 -15.76115 -15.43673 -15.03174 -14.69303 -14.42883 -14.08752
-14.00328 -13.75189 -13.68734 -13.22559 -13.16675 -12.65199 -12.60724 -12.33903
-12.14382 -11.95680 -11.69641 -11.63120 -11.55394 -11.44794 -11.30043 -11.26142
-11.14726 -10.99882 -10.78916 -10.64916 -10.44780 -10.14522 -10.06785 -9.90208
-9.77621 -9.33283 -8.97479 -8.94711 -8.74099 -8.33833 -7.15253 -5.98270
-3.96041 0.48519 0.94277 1.18641 1.95013 2.13433 3.36356 3.40461
3.41385 3.43699 3.60035 3.92648 4.41333 4.56215 4.72131 4.74568
4.87607 4.93516 5.14599 5.21272 5.22386 5.29453 5.35769 5.43901
5.57844 5.69549 5.74263 5.80166 5.84255 6.01919 6.05555 6.11522
6.18195 6.20198 6.21381 6.25349 6.38518 6.39273 6.53920 6.56441
6.67275 6.70627 6.81723 6.92117 7.25085 7.34796 7.38452 7.55180
7.87442 7.90527 7.95257 8.17081 8.25830 8.60058 9.10805 9.64993
11.12122
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.014846 B = 0.002479 C = 0.002359
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1885.543576 B =11291.018040 C =11867.824633
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.111 4.111
3 C -0.125 4.125
4 C 0.078 3.922
5 N -0.523 5.523
6 C 0.193 3.807
7 C -0.501 4.501
8 H 0.079 0.921
9 C 0.053 3.947
10 N -0.900 5.900
11 Si 0.891 3.109
12 H -0.276 1.276
13 H -0.290 1.290
14 H -0.276 1.276
15 C 0.030 3.970
16 C 0.154 3.846
17 H 0.105 0.895
18 O -0.536 6.536
19 C -0.108 4.108
20 C -0.087 4.087
21 C -0.119 4.119
22 C -0.085 4.085
23 C -0.022 4.022
24 C 0.225 3.775
25 N -0.266 5.266
26 N -0.049 5.049
27 N -0.230 5.230
28 H 0.475 0.525
29 N -0.297 5.297
30 C -0.066 4.066
31 H 0.040 0.960
32 H 0.047 0.953
33 H 0.045 0.955
34 H 0.118 0.882
35 H 0.074 0.926
36 H 0.030 0.970
37 H 0.034 0.966
38 H 0.020 0.980
39 H 0.047 0.953
40 H 0.021 0.979
41 H -0.005 1.005
42 H 0.260 0.740
43 H 0.072 0.928
44 H 0.031 0.969
45 H 0.368 0.632
46 H 0.129 0.871
47 H 0.131 0.869
48 H 0.130 0.870
49 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.498 4.404 22.713 23.142
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.130 4.130
3 C -0.182 4.182
4 C -0.050 4.050
5 N -0.247 5.247
6 C 0.068 3.932
7 C -0.539 4.539
8 H 0.097 0.903
9 C -0.148 4.148
10 N -0.540 5.540
11 Si 0.719 3.281
12 H -0.202 1.202
13 H -0.216 1.216
14 H -0.202 1.202
15 C -0.099 4.099
16 C 0.093 3.907
17 H 0.123 0.877
18 O -0.340 6.340
19 C -0.109 4.109
20 C -0.106 4.106
21 C -0.137 4.137
22 C -0.105 4.105
23 C -0.026 4.026
24 C -0.055 4.055
25 N -0.139 5.139
26 N -0.044 5.044
27 N -0.075 5.075
28 H 0.329 0.671
29 N -0.149 5.149
30 C -0.086 4.086
31 H 0.059 0.941
32 H 0.066 0.934
33 H 0.065 0.935
34 H 0.135 0.865
35 H 0.093 0.907
36 H 0.050 0.950
37 H 0.053 0.947
38 H 0.039 0.961
39 H 0.065 0.935
40 H 0.039 0.961
41 H 0.013 0.987
42 H 0.070 0.930
43 H 0.090 0.910
44 H 0.049 0.951
45 H 0.215 0.785
46 H 0.147 0.853
47 H 0.149 0.851
48 H 0.148 0.852
49 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges -1.475 4.793 22.684 23.232
hybrid contribution 0.517 -1.104 -0.059 1.221
sum -0.958 3.689 22.624 22.943
Atomic orbital electron populations
1.21844 0.97426 1.00579 1.00335 1.21567 0.92709 0.97223 1.01454
1.21605 1.02866 0.95137 0.98640 1.21959 0.88416 0.97479 0.97141
1.62015 1.06984 1.52193 1.03462 1.19796 0.94759 0.88603 0.90048
1.21368 1.43319 0.99550 0.89711 0.90304 1.25008 0.95716 0.94877
0.99187 1.69953 1.46096 1.07591 1.30391 0.86664 0.78695 0.78631
0.84111 1.20162 1.21566 1.20154 1.22702 1.00749 0.94784 0.91686
1.20865 0.96400 0.87727 0.85660 0.87691 1.86651 1.23103 1.38893
1.85382 1.20732 0.93914 0.99046 0.97211 1.21137 0.95006 0.97524
0.96939 1.21041 0.99851 0.99951 0.92877 1.21113 0.91458 0.97955
0.99953 1.17177 0.90872 1.04308 0.90226 1.23738 0.90634 1.00517
0.90578 1.76134 1.08631 1.15494 1.13625 1.78934 1.16056 1.14274
0.95177 1.47729 1.02009 1.42576 1.15235 0.67115 1.74912 1.12199
1.19391 1.08367 1.21002 1.00549 0.96369 0.90719 0.94052 0.93418
0.93546 0.86458 0.90740 0.95038 0.94699 0.96146 0.93497 0.96077
0.98708 0.93034 0.90980 0.95104 0.78454 0.85281 0.85136 0.85168
0.84626
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.36 9.19 37.16 0.34 -2.02 16
2 C -0.11 -2.14 2.40 -90.62 -0.22 -2.36 16
3 C -0.13 -2.30 8.47 37.16 0.31 -1.99 16
4 C 0.08 1.49 4.24 -3.82 -0.02 1.48 16
5 N -0.52 -10.53 3.70 -236.06 -0.87 -11.41 16
6 C 0.19 4.79 4.76 -4.98 -0.02 4.76 16
7 C -0.50 -13.28 6.94 -34.44 -0.24 -13.52 16
8 H 0.08 2.05 4.70 -52.49 -0.25 1.80 16
9 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16
10 N -0.90 -26.24 13.29 55.43 0.74 -25.50 16
11 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16
12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
14 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16
15 C 0.03 0.50 4.60 -3.82 -0.02 0.48 16
16 C 0.15 2.16 3.24 -27.89 -0.09 2.07 16
17 H 0.11 1.54 6.43 -51.93 -0.33 1.21 16
18 O -0.54 -7.88 13.03 -35.23 -0.46 -8.34 16
19 C -0.11 -1.31 5.00 -104.67 -0.52 -1.83 16
20 C -0.09 -0.90 9.32 -39.53 -0.37 -1.27 16
21 C -0.12 -1.09 10.03 -39.63 -0.40 -1.49 16
22 C -0.08 -0.83 9.70 -39.26 -0.38 -1.21 16
23 C -0.02 -0.26 5.88 -104.89 -0.62 -0.88 16
24 C 0.22 2.64 7.94 -156.30 -1.24 1.40 16
25 N -0.27 -3.36 12.23 32.16 0.39 -2.97 16
26 N -0.05 -0.51 13.47 60.35 0.81 0.30 16
27 N -0.23 -1.67 7.90 60.35 0.48 -1.20 16
28 H 0.47 1.03 8.96 -340.36 -3.05 -2.02 16
29 N -0.30 -2.89 12.08 32.17 0.39 -2.50 16
30 C -0.07 -0.80 9.33 -39.26 -0.37 -1.17 16
31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16
32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
33 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16
34 H 0.12 2.68 4.79 -51.93 -0.25 2.43 16
35 H 0.07 1.53 6.89 -51.93 -0.36 1.17 16
36 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16
37 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16
38 H 0.02 0.41 7.77 -51.93 -0.40 0.01 16
39 H 0.05 0.80 6.28 -51.93 -0.33 0.48 16
40 H 0.02 0.56 7.64 -51.93 -0.40 0.16 16
41 H 0.00 -0.13 7.75 -51.93 -0.40 -0.54 16
42 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16
43 H 0.07 1.20 7.67 -51.93 -0.40 0.80 16
44 H 0.03 0.52 8.04 -51.93 -0.42 0.10 16
45 H 0.37 4.32 7.38 45.56 0.34 4.66 16
46 H 0.13 1.11 6.60 -52.49 -0.35 0.76 16
47 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16
48 H 0.13 1.08 7.88 -52.49 -0.41 0.66 16
49 H 0.14 1.65 7.89 -52.49 -0.41 1.23 16
LS Contribution 396.83 15.07 5.98 5.98
Total: -1.00 -32.30 396.83 -10.60 -42.89
By element:
Atomic # 1 Polarization: 11.72 SS G_CDS: -9.09 Total: 2.62 kcal
Atomic # 6 Polarization: -12.24 SS G_CDS: -3.94 Total: -16.18 kcal
Atomic # 7 Polarization: -45.20 SS G_CDS: 1.94 Total: -43.26 kcal
Atomic # 8 Polarization: -7.88 SS G_CDS: -0.46 Total: -8.34 kcal
Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal
Total LS contribution 5.98 Total: 5.98 kcal
Total: -32.30 -10.60 -42.89 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001574205793.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 143.049 kcal
(2) G-P(sol) polarization free energy of solvation -32.295 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.753 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.596 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.891 kcal
(6) G-S(sol) free energy of system = (1) + (5) 100.158 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds