Wall clock time and date at job start Wed Apr 1 2020 03:04:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53001 * 109.47295 * 2 1
4 4 C 1.53003 * 109.46731 * 119.99843 * 2 1 3
5 5 N 1.46906 * 109.46894 * 178.41619 * 4 2 1
6 6 C 1.46894 * 110.99854 * 285.89640 * 5 4 2
7 7 C 1.50702 * 109.46933 * 75.80358 * 6 5 4
8 8 H 1.07995 * 120.00181 * 5.36888 * 7 6 5
9 9 C 1.37883 * 120.00152 * 185.37197 * 7 6 5
10 10 N 1.31515 * 119.99814 * 359.97438 * 9 7 6
11 11 Si 1.86798 * 120.00019 * 179.97438 * 9 7 6
12 12 H 1.48500 * 109.47106 * 59.99942 * 11 9 7
13 13 H 1.48506 * 109.46976 * 179.97438 * 11 9 7
14 14 H 1.48500 * 109.47210 * 299.99634 * 11 9 7
15 15 C 1.46904 * 111.00014 * 161.94650 * 5 4 2
16 16 C 1.52999 * 109.47132 * 287.40616 * 15 5 4
17 17 H 1.08996 * 109.47336 * 58.05895 * 16 15 5
18 18 O 1.42900 * 109.47050 * 298.06001 * 16 15 5
19 19 C 1.50696 * 109.47046 * 178.06287 * 16 15 5
20 20 C 1.38331 * 119.94511 * 85.00066 * 19 16 15
21 21 C 1.38294 * 120.24042 * 179.97438 * 20 19 16
22 22 C 1.38052 * 120.11610 * 359.97350 * 21 20 19
23 23 C 1.39282 * 119.87994 * 0.02562 * 22 21 20
24 24 C 1.48466 * 120.11632 * 179.97438 * 23 22 21
25 25 N 1.34047 * 126.67261 * 179.68918 * 24 23 22
26 26 N 1.28984 * 107.26663 * 179.84062 * 25 24 23
27 27 N 1.28732 * 108.94594 * 0.42897 * 26 25 24
28 28 H 0.96999 * 125.34363 * 179.72631 * 27 26 25
29 29 N 1.28878 * 109.31532 * 359.72694 * 27 26 25
30 30 C 1.38016 * 119.93871 * 264.97202 * 19 16 15
31 31 H 1.08996 * 109.47086 * 300.00524 * 1 2 3
32 32 H 1.08996 * 109.46494 * 60.00418 * 1 2 3
33 33 H 1.09004 * 109.47175 * 180.02562 * 1 2 3
34 34 H 1.08994 * 109.47553 * 239.99240 * 2 1 3
35 35 H 1.08997 * 109.47298 * 184.22851 * 3 2 1
36 36 H 1.09000 * 109.46644 * 304.22558 * 3 2 1
37 37 H 1.08996 * 109.47296 * 64.22498 * 3 2 1
38 38 H 1.09001 * 109.47619 * 58.41281 * 4 2 1
39 39 H 1.08998 * 109.46896 * 298.40967 * 4 2 1
40 40 H 1.08999 * 109.47413 * 195.80168 * 6 5 4
41 41 H 1.09006 * 109.47285 * 315.80678 * 6 5 4
42 42 H 0.96997 * 119.99713 * 180.02562 * 10 9 7
43 43 H 1.08999 * 109.47332 * 167.40108 * 15 5 4
44 44 H 1.09000 * 109.46942 * 47.40096 * 15 5 4
45 45 H 0.96699 * 114.00280 * 300.00418 * 18 16 15
46 46 H 1.07997 * 119.87894 * 359.94781 * 20 19 16
47 47 H 1.07995 * 119.94527 * 179.97438 * 21 20 19
48 48 H 1.07999 * 120.06213 * 179.74220 * 22 21 20
49 49 H 1.07997 * 120.05544 * 0.02562 * 30 19 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0399 -0.7212 1.2493
5 7 3.5085 -0.7545 1.2304
6 6 4.0003 -1.7295 0.2479
7 6 3.8499 -1.1631 -1.1405
8 1 3.5125 -0.1461 -1.2752
9 6 4.1428 -1.9434 -2.2389
10 7 4.5541 -3.1818 -2.0749
11 14 3.9556 -1.2416 -3.9599
12 1 4.8428 -0.0604 -4.1120
13 1 4.3312 -2.2740 -4.9591
14 1 2.5447 -0.8322 -4.1768
15 6 4.0460 -1.0380 2.5678
16 6 3.8652 0.1908 3.4612
17 1 2.8080 0.4513 3.5113
18 8 4.6007 1.2882 2.9163
19 6 4.3732 -0.1160 4.8463
20 6 5.7171 0.0338 5.1378
21 6 6.1899 -0.2456 6.4071
22 6 5.3216 -0.6752 7.3906
23 6 3.9674 -0.8277 7.1025
24 6 3.0291 -1.2900 8.1561
25 7 1.7080 -1.4756 8.0262
26 7 1.2646 -1.8830 9.1669
27 7 2.2460 -1.9494 9.9973
28 1 2.1785 -2.2250 10.9248
29 7 3.3323 -1.5922 9.4028
30 6 3.4966 -0.5454 5.8221
31 1 -0.3633 0.5139 0.8899
32 1 -0.3632 0.5138 -0.8900
33 1 -0.3634 -1.0277 0.0005
34 1 1.8934 -0.5139 -0.8898
35 1 3.1274 1.4434 -0.0758
36 1 1.6162 1.9777 -0.8497
37 1 1.7399 1.9340 0.9254
38 1 1.6536 -1.7404 1.2637
39 1 1.7000 -0.1912 2.1390
40 1 5.0517 -1.9419 0.4416
41 1 3.4226 -2.6503 0.3292
42 1 4.7605 -3.7306 -2.8476
43 1 5.1064 -1.2778 2.4900
44 1 3.5130 -1.8841 3.0017
45 1 5.5512 1.1265 2.8423
46 1 6.3997 0.3696 4.3713
47 1 7.2401 -0.1274 6.6293
48 1 5.6924 -0.8971 8.3804
49 1 2.4476 -0.6619 5.5934
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001574205793.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:04:02
Heat of formation + Delta-G solvation = 77.836282 kcal
Electronic energy + Delta-G solvation = -30214.447336 eV
Core-core repulsion = 26178.580020 eV
Total energy + Delta-G solvation = -4035.867316 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-45.49220 -40.80223 -39.23757 -37.52191 -35.43651 -35.09900 -34.58035 -34.45805
-32.64269 -31.51618 -29.93842 -28.26058 -27.74740 -26.48540 -25.71865 -25.53319
-24.22051 -23.06306 -22.31361 -21.58786 -20.56890 -20.18621 -18.55251 -18.33947
-18.17279 -16.90845 -16.87054 -16.72219 -16.42877 -16.30089 -15.68743 -15.34688
-15.14811 -15.08379 -14.63138 -14.45744 -14.30028 -14.07517 -13.94454 -13.84804
-13.40709 -13.16987 -13.01007 -12.85728 -12.80752 -12.65333 -12.49281 -12.43944
-12.39736 -12.30079 -12.20775 -12.02094 -11.91435 -11.74978 -11.58673 -11.41274
-11.31311 -10.84355 -10.80590 -10.42948 -9.81015 -9.62709 -8.87287 -8.09888
-6.13563 -0.30820 0.15055 0.35411 1.29402 1.40011 1.44857 1.46612
1.53718 2.45782 2.62561 2.75748 3.10838 3.21769 3.26032 3.65701
3.88842 3.90497 4.05780 4.10694 4.18778 4.23542 4.28244 4.37825
4.40078 4.45886 4.56180 4.59631 4.76511 4.76875 4.80697 4.84779
4.98165 5.01513 5.03824 5.14750 5.19683 5.21335 5.28960 5.37779
5.39715 5.44388 5.50611 5.58310 5.60052 5.72372 5.88735 5.90808
5.93801 6.19642 6.46017 6.71757 6.96021 7.00970 7.08369 7.51523
9.00475
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.014846 B = 0.002479 C = 0.002359
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1885.543576 B =11291.018040 C =11867.824633
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.112 4.112
3 C -0.115 4.115
4 C 0.079 3.921
5 N -0.521 5.521
6 C 0.209 3.791
7 C -0.500 4.500
8 H 0.084 0.916
9 C -0.001 4.001
10 N -0.940 5.940
11 Si 0.953 3.047
12 H -0.268 1.268
13 H -0.290 1.290
14 H -0.268 1.268
15 C 0.030 3.970
16 C 0.171 3.829
17 H 0.098 0.902
18 O -0.549 6.549
19 C -0.120 4.120
20 C -0.090 4.090
21 C -0.112 4.112
22 C -0.080 4.080
23 C -0.035 4.035
24 C 0.211 3.789
25 N -0.299 5.299
26 N -0.058 5.058
27 N -0.199 5.199
28 H 0.495 0.505
29 N -0.292 5.292
30 C -0.078 4.078
31 H 0.061 0.939
32 H 0.057 0.943
33 H 0.042 0.958
34 H 0.079 0.921
35 H 0.049 0.951
36 H 0.043 0.957
37 H 0.049 0.951
38 H 0.002 0.998
39 H 0.072 0.928
40 H 0.000 1.000
41 H -0.041 1.041
42 H 0.259 0.741
43 H 0.070 0.930
44 H 0.026 0.974
45 H 0.381 0.619
46 H 0.146 0.854
47 H 0.163 0.837
48 H 0.149 0.851
49 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.204 6.025 24.259 24.997
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.131 4.131
3 C -0.172 4.172
4 C -0.049 4.049
5 N -0.245 5.245
6 C 0.082 3.918
7 C -0.538 4.538
8 H 0.102 0.898
9 C -0.198 4.198
10 N -0.581 5.581
11 Si 0.779 3.221
12 H -0.193 1.193
13 H -0.216 1.216
14 H -0.193 1.193
15 C -0.098 4.098
16 C 0.111 3.889
17 H 0.116 0.884
18 O -0.355 6.355
19 C -0.121 4.121
20 C -0.109 4.109
21 C -0.130 4.130
22 C -0.100 4.100
23 C -0.038 4.038
24 C -0.068 4.068
25 N -0.171 5.171
26 N -0.053 5.053
27 N -0.050 5.050
28 H 0.354 0.646
29 N -0.144 5.144
30 C -0.098 4.098
31 H 0.080 0.920
32 H 0.076 0.924
33 H 0.061 0.939
34 H 0.097 0.903
35 H 0.068 0.932
36 H 0.062 0.938
37 H 0.068 0.932
38 H 0.021 0.979
39 H 0.090 0.910
40 H 0.018 0.982
41 H -0.023 1.023
42 H 0.068 0.932
43 H 0.089 0.911
44 H 0.044 0.956
45 H 0.230 0.770
46 H 0.164 0.836
47 H 0.180 0.820
48 H 0.166 0.834
49 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges -1.193 6.429 24.263 25.129
hybrid contribution 0.448 -1.634 -0.351 1.730
sum -0.746 4.795 23.912 24.400
Atomic orbital electron populations
1.21773 0.94987 1.00935 1.01884 1.21469 0.94860 0.97308 0.99462
1.21481 1.01165 0.94636 0.99964 1.22002 0.87569 0.96864 0.98425
1.61975 1.07830 1.50160 1.04492 1.19455 0.92930 0.88139 0.91226
1.21685 1.41998 0.99667 0.90466 0.89777 1.25820 0.95695 0.95151
1.03153 1.70091 1.47756 1.08990 1.31310 0.85667 0.79037 0.77981
0.79424 1.19306 1.21599 1.19265 1.22798 1.00320 0.96399 0.90326
1.20542 0.96233 0.85952 0.86198 0.88411 1.86612 1.24291 1.39021
1.85573 1.20489 0.94913 1.00750 0.95924 1.21404 0.94387 0.96993
0.98125 1.21391 1.01282 0.98408 0.91900 1.21388 0.90721 0.96890
1.00978 1.17313 0.91755 1.04752 0.89964 1.23841 0.90516 1.01214
0.91263 1.76114 1.09413 1.16857 1.14760 1.78869 1.16558 1.14668
0.95180 1.47796 1.00941 1.40440 1.15855 0.64593 1.74867 1.12663
1.19183 1.07715 1.20968 1.00290 0.97172 0.91394 0.91958 0.92378
0.93859 0.90325 0.93192 0.93839 0.93165 0.97945 0.91011 0.98234
1.02339 0.93195 0.91123 0.95567 0.77014 0.83608 0.81972 0.83375
0.85539
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.32 9.19 71.98 0.66 -3.66 16
2 C -0.11 -4.29 2.40 -10.79 -0.03 -4.31 16
3 C -0.12 -4.09 8.47 71.98 0.61 -3.48 16
4 C 0.08 3.07 4.24 86.30 0.37 3.43 16
5 N -0.52 -21.54 3.70 -900.77 -3.33 -24.87 16
6 C 0.21 10.83 4.76 85.56 0.41 11.24 16
7 C -0.50 -27.21 6.94 25.60 0.18 -27.03 16
8 H 0.08 4.43 4.70 -2.91 -0.01 4.42 16
9 C 0.00 -0.07 5.46 84.66 0.46 0.39 16
10 N -0.94 -56.52 13.29 21.45 0.28 -56.24 16
11 Si 0.95 44.22 29.54 68.60 2.03 46.25 16
12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16
13 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16
14 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16
15 C 0.03 1.04 4.60 86.30 0.40 1.43 16
16 C 0.17 4.75 3.24 29.85 0.10 4.84 16
17 H 0.10 2.84 6.43 -2.39 -0.02 2.82 16
18 O -0.55 -15.59 13.03 -148.98 -1.94 -17.54 16
19 C -0.12 -2.82 5.00 -19.90 -0.10 -2.92 16
20 C -0.09 -1.70 9.32 22.31 0.21 -1.49 16
21 C -0.11 -1.73 10.03 22.24 0.22 -1.51 16
22 C -0.08 -1.39 9.70 22.48 0.22 -1.17 16
23 C -0.03 -0.77 5.88 -20.04 -0.12 -0.88 16
24 C 0.21 4.79 7.94 137.38 1.09 5.88 16
25 N -0.30 -7.50 12.23 -52.18 -0.64 -8.14 16
26 N -0.06 -1.15 13.47 37.02 0.50 -0.65 16
27 N -0.20 -2.57 7.90 37.02 0.29 -2.27 16
28 H 0.49 1.08 8.96 -347.53 -3.12 -2.04 16
29 N -0.29 -5.17 12.08 -52.13 -0.63 -5.80 16
30 C -0.08 -1.88 9.33 22.48 0.21 -1.67 16
31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16
32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16
33 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16
34 H 0.08 3.65 4.79 -2.39 -0.01 3.64 16
35 H 0.05 2.01 6.89 -2.39 -0.02 1.99 16
36 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16
37 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16
38 H 0.00 0.10 7.77 -2.39 -0.02 0.08 16
39 H 0.07 2.42 6.28 -2.39 -0.01 2.40 16
40 H 0.00 -0.02 7.64 -2.39 -0.02 -0.04 16
41 H -0.04 -2.40 7.75 -2.38 -0.02 -2.42 16
42 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16
43 H 0.07 2.40 7.67 -2.39 -0.02 2.38 16
44 H 0.03 0.92 8.04 -2.39 -0.02 0.90 16
45 H 0.38 8.47 7.38 -74.06 -0.55 7.93 16
46 H 0.15 2.17 6.60 -2.91 -0.02 2.15 16
47 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16
48 H 0.15 2.01 7.88 -2.91 -0.02 1.98 16
49 H 0.13 3.19 7.89 -2.91 -0.02 3.16 16
Total: -1.00 -71.60 396.83 -1.22 -72.82
By element:
Atomic # 1 Polarization: 20.01 SS G_CDS: -2.66 Total: 17.35 kcal
Atomic # 6 Polarization: -25.79 SS G_CDS: 4.88 Total: -20.90 kcal
Atomic # 7 Polarization: -94.45 SS G_CDS: -3.52 Total: -97.97 kcal
Atomic # 8 Polarization: -15.59 SS G_CDS: -1.94 Total: -17.54 kcal
Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal
Total: -71.60 -1.22 -72.82 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001574205793.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 150.655 kcal
(2) G-P(sol) polarization free energy of solvation -71.603 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.052 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.215 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.818 kcal
(6) G-S(sol) free energy of system = (1) + (5) 77.836 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds