Wall clock time and date at job start Wed Apr 1 2020 03:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47269 * 2 1 4 4 C 1.53001 * 109.47421 * 120.00451 * 2 1 3 5 5 N 1.46501 * 109.47425 * 171.20344 * 4 2 1 6 6 C 1.46494 * 120.00348 * 277.60555 * 5 4 2 7 7 C 1.50702 * 109.47113 * 277.16035 * 6 5 4 8 8 H 1.08000 * 119.99823 * 359.97438 * 7 6 5 9 9 C 1.37870 * 120.00261 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00015 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00158 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47058 * 60.00359 * 11 9 7 13 13 H 1.48501 * 109.47092 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47053 * 300.00536 * 11 9 7 15 15 C 1.34773 * 119.99558 * 97.59899 * 5 4 2 16 16 O 1.21711 * 120.00480 * 5.09643 * 15 5 4 17 17 C 1.46588 * 119.99736 * 185.09593 * 15 5 4 18 18 C 1.40634 * 126.54190 * 333.22905 * 17 15 5 19 19 N 1.30694 * 108.73163 * 179.97438 * 18 17 15 20 20 N 1.39909 * 109.51687 * 359.97438 * 19 18 17 21 21 C 1.36317 * 132.16180 * 179.97438 * 20 19 18 22 22 C 1.35751 * 119.15495 * 179.76260 * 21 20 19 23 23 C 1.50698 * 120.32040 * 180.26606 * 22 21 20 24 24 C 1.52996 * 109.47546 * 270.23555 * 23 22 21 25 25 N 1.46904 * 109.47391 * 179.97438 * 24 23 22 26 26 C 1.39966 * 119.35784 * 0.50703 * 22 21 20 27 27 N 1.31507 * 120.10221 * 359.48425 * 26 22 21 28 28 C 1.33378 * 120.85470 * 0.25871 * 27 26 22 29 29 H 1.09006 * 109.47022 * 299.99742 * 1 2 3 30 30 H 1.08995 * 109.47351 * 59.99680 * 1 2 3 31 31 H 1.09004 * 109.47465 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47022 * 240.00258 * 2 1 3 33 33 H 1.09000 * 109.47505 * 185.55496 * 3 2 1 34 34 H 1.08996 * 109.47580 * 305.55531 * 3 2 1 35 35 H 1.09005 * 109.46880 * 65.55512 * 3 2 1 36 36 H 1.09000 * 109.47013 * 51.20695 * 4 2 1 37 37 H 1.08994 * 109.47103 * 291.20590 * 4 2 1 38 38 H 1.09008 * 109.47081 * 37.15745 * 6 5 4 39 39 H 1.08994 * 109.47625 * 157.15754 * 6 5 4 40 40 H 0.97000 * 120.00322 * 179.97438 * 10 9 7 41 41 H 1.08004 * 125.63567 * 359.97432 * 18 17 15 42 42 H 1.07998 * 120.41934 * 0.02562 * 21 20 19 43 43 H 1.08996 * 109.47424 * 30.24446 * 23 22 21 44 44 H 1.09007 * 109.47185 * 150.23908 * 23 22 21 45 45 H 1.08996 * 109.47486 * 300.00853 * 24 23 22 46 46 H 1.09009 * 109.46883 * 60.00440 * 24 23 22 47 47 H 1.00903 * 111.00096 * 179.97438 * 25 24 23 48 48 H 1.00890 * 111.00274 * 303.95887 * 25 24 23 49 49 H 1.07993 * 119.94764 * 179.76743 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4897 -0.9070 1.1482 6 6 4.0327 -2.0315 0.3824 7 6 4.0327 -3.2704 1.2405 8 1 3.6654 -3.2244 2.2551 9 6 4.5016 -4.4623 0.7305 10 7 4.9493 -4.5182 -0.5048 11 14 4.5022 -5.9977 1.7945 12 1 3.1123 -6.3094 2.2147 13 1 5.0525 -7.1378 1.0181 14 1 5.3427 -5.7665 2.9967 15 6 4.3238 -0.0430 1.7599 16 8 3.8746 0.8361 2.4718 17 6 5.7722 -0.1621 1.5679 18 6 6.4817 -1.3353 1.2549 19 7 7.7528 -1.0452 1.1633 20 7 7.9396 0.3195 1.4084 21 6 9.0567 1.1005 1.4311 22 6 8.9320 2.4253 1.6996 23 6 10.1487 3.3141 1.7256 24 6 10.7308 3.3408 3.1402 25 7 11.9172 4.2067 3.1653 26 6 7.6630 2.9568 1.9571 27 7 6.6035 2.1783 1.9281 28 6 6.7182 0.8768 1.6598 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1254 1.4441 -0.0995 34 1 1.5977 1.9842 -0.8360 35 1 1.7601 1.9267 0.9356 36 1 1.5541 -1.6936 1.3311 37 1 1.8107 -0.1250 2.1322 38 1 3.4163 -2.2012 -0.5006 39 1 5.0529 -1.8028 0.0746 40 1 5.2796 -5.3567 -0.8636 41 1 6.0479 -2.3143 1.1137 42 1 10.0280 0.6715 1.2339 43 1 10.8958 2.9277 1.0324 44 1 9.8669 4.3247 1.4296 45 1 9.9837 3.7273 3.8334 46 1 11.0127 2.3303 3.4362 47 1 12.3202 4.2413 4.0898 48 1 12.5986 3.9064 2.4846 49 1 7.5533 4.0087 2.1755 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575593068.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:19 Heat of formation + Delta-G solvation = 80.973241 kcal Electronic energy + Delta-G solvation = -30800.106948 eV Core-core repulsion = 26764.375661 eV Total energy + Delta-G solvation = -4035.731287 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.21563 -39.16168 -38.08556 -35.95382 -35.73083 -34.27738 -33.71454 -32.33000 -31.92405 -29.44801 -27.96959 -27.31478 -26.69388 -25.63138 -24.76032 -23.39207 -23.07292 -22.02683 -21.26240 -19.87054 -18.92677 -17.93267 -17.03141 -16.63851 -16.50906 -16.13062 -15.95821 -15.43964 -15.32757 -14.76398 -14.47220 -14.31188 -14.20463 -13.96653 -13.79200 -13.49096 -13.01263 -12.86329 -12.76467 -12.59477 -12.34496 -12.15341 -12.12534 -11.83983 -11.68723 -11.28344 -11.22815 -11.08942 -10.95203 -10.90437 -10.77505 -10.51648 -10.36756 -10.24020 -10.02209 -9.72999 -9.63718 -9.23731 -9.13469 -8.96263 -8.59512 -7.72159 -7.46488 -6.24427 -4.34387 0.56004 0.88478 2.20882 2.72946 3.22916 3.28072 3.30398 3.33027 3.87556 3.93412 4.08218 4.16531 4.27597 4.33273 4.43108 4.61023 4.75489 4.79025 5.05696 5.08764 5.27625 5.31395 5.36239 5.41593 5.50230 5.61263 5.62868 5.68391 5.72332 5.94463 6.01475 6.07097 6.12521 6.19434 6.26656 6.42638 6.47982 6.50446 6.55064 6.63707 6.74910 6.81159 6.88778 6.95075 6.95948 7.20468 7.62679 7.69882 7.73531 7.78848 7.99818 8.46197 8.78160 9.20804 9.35645 10.79553 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.010095 B = 0.003502 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2772.909716 B = 7992.541947 C =10194.703057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.113 4.113 3 C -0.135 4.135 4 C 0.127 3.873 5 N -0.592 5.592 6 C 0.220 3.780 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.066 3.934 10 N -0.885 5.885 11 Si 0.896 3.104 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.597 3.403 16 O -0.560 6.560 17 C -0.266 4.266 18 C 0.137 3.863 19 N -0.322 5.322 20 N -0.311 5.311 21 C 0.169 3.831 22 C -0.202 4.202 23 C -0.056 4.056 24 C 0.061 3.939 25 N -0.852 5.852 26 C 0.178 3.822 27 N -0.437 5.437 28 C 0.294 3.706 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.050 0.950 34 H 0.042 0.958 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.035 0.965 39 H 0.050 0.950 40 H 0.269 0.731 41 H 0.248 0.752 42 H 0.175 0.825 43 H 0.075 0.925 44 H 0.092 0.908 45 H 0.077 0.923 46 H 0.029 0.971 47 H 0.344 0.656 48 H 0.341 0.659 49 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.049 13.351 1.907 16.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.133 4.133 3 C -0.192 4.192 4 C 0.004 3.996 5 N -0.321 5.321 6 C 0.100 3.900 7 C -0.583 4.583 8 H 0.084 0.916 9 C -0.138 4.138 10 N -0.522 5.522 11 Si 0.723 3.277 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.386 3.614 16 O -0.440 6.440 17 C -0.282 4.282 18 C -0.042 4.042 19 N -0.144 5.144 20 N -0.079 5.079 21 C 0.032 3.968 22 C -0.209 4.209 23 C -0.096 4.096 24 C -0.069 4.069 25 N -0.382 5.382 26 C -0.006 4.006 27 N -0.147 5.147 28 C 0.065 3.935 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.263 0.737 42 H 0.192 0.808 43 H 0.094 0.906 44 H 0.111 0.889 45 H 0.096 0.904 46 H 0.047 0.953 47 H 0.157 0.843 48 H 0.153 0.847 49 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 8.535 13.770 1.807 16.301 hybrid contribution 0.703 -1.998 0.620 2.207 sum 9.238 11.772 2.428 15.160 Atomic orbital electron populations 1.21744 0.95315 1.01545 1.01231 1.21504 0.95197 0.96809 0.99743 1.21719 1.01018 0.95625 1.00838 1.21338 0.80781 1.00262 0.97249 1.47859 1.05288 1.27806 1.51186 1.19885 0.95846 0.82642 0.91648 1.21542 1.43310 0.93467 0.99962 0.91648 1.24994 0.94787 0.98948 0.95066 1.69920 1.40753 1.27487 1.14077 0.86573 0.78739 0.82007 0.80398 1.19974 1.21063 1.19917 1.16709 0.84060 0.81185 0.79476 1.90710 1.77752 1.36042 1.39525 1.19615 0.94669 0.91154 1.22724 1.25923 0.88387 1.01784 0.88108 1.77763 1.19879 0.85875 1.30921 1.47194 1.06472 1.09611 1.44620 1.21828 0.90967 0.89394 0.94606 1.20293 0.98148 0.93236 1.09207 1.20294 0.92933 0.99171 0.97156 1.21844 0.93316 0.94808 0.96980 1.58689 1.10739 1.57179 1.11584 1.23411 0.86511 1.00286 0.90383 1.68261 1.31402 1.00998 1.14006 1.20333 0.85247 0.90025 0.97915 0.92880 0.93086 0.92630 0.91039 0.93083 0.93932 0.92570 0.90671 0.90552 0.94685 0.93278 0.92162 0.73694 0.80820 0.90607 0.88944 0.90439 0.95281 0.84316 0.84724 0.80587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.18 37.15 0.34 -1.60 16 2 C -0.11 -1.91 3.08 -90.63 -0.28 -2.19 16 3 C -0.13 -2.30 8.46 37.15 0.31 -1.98 16 4 C 0.13 2.47 4.97 -4.04 -0.02 2.45 16 5 N -0.59 -13.05 2.32 -176.64 -0.41 -13.46 16 6 C 0.22 5.21 4.70 -5.20 -0.02 5.18 16 7 C -0.54 -13.67 7.81 -34.44 -0.27 -13.94 16 8 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.07 1.68 5.26 -17.82 -0.09 1.59 16 10 N -0.89 -23.33 13.29 55.43 0.74 -22.59 16 11 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 13 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 14 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 15 C 0.60 13.81 6.45 -12.89 -0.08 13.73 16 16 O -0.56 -13.75 16.11 5.18 0.08 -13.67 16 17 C -0.27 -5.90 5.76 -104.66 -0.60 -6.50 16 18 C 0.14 3.01 9.56 -17.13 -0.16 2.84 16 19 N -0.32 -6.52 12.58 30.76 0.39 -6.13 16 20 N -0.31 -5.48 3.86 -11.97 -0.05 -5.52 16 21 C 0.17 2.07 10.94 -16.45 -0.18 1.89 16 22 C -0.20 -2.01 5.11 -104.87 -0.54 -2.54 16 23 C -0.06 -0.36 5.62 -27.89 -0.16 -0.51 16 24 C 0.06 0.39 6.77 -3.82 -0.03 0.36 16 25 N -0.85 -4.68 9.62 -10.37 -0.10 -4.78 16 26 C 0.18 2.15 10.97 -17.04 -0.19 1.97 16 27 N -0.44 -7.74 10.47 -12.00 -0.13 -7.86 16 28 C 0.29 5.84 7.80 -155.84 -1.22 4.63 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 1.28 7.79 -51.93 -0.40 0.88 16 33 H 0.05 0.99 7.20 -51.93 -0.37 0.62 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 36 H 0.07 1.44 8.11 -51.93 -0.42 1.02 16 37 H 0.08 1.51 7.12 -51.93 -0.37 1.14 16 38 H 0.04 0.87 7.77 -51.92 -0.40 0.47 16 39 H 0.05 1.21 4.12 -51.93 -0.21 0.99 16 40 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 41 H 0.25 5.82 4.21 -52.48 -0.22 5.60 16 42 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 43 H 0.08 0.39 8.09 -51.93 -0.42 -0.03 16 44 H 0.09 0.54 8.10 -51.92 -0.42 0.12 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.03 0.19 8.14 -51.92 -0.42 -0.23 16 47 H 0.34 1.52 9.08 -39.29 -0.36 1.17 16 48 H 0.34 1.43 8.99 -39.30 -0.35 1.07 16 49 H 0.18 1.45 8.06 -52.49 -0.42 1.02 16 LS Contribution 401.32 15.07 6.05 6.05 Total: -1.00 -31.71 401.32 -8.94 -40.64 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -7.31 Total: 6.96 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: -3.18 Total: 5.36 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: 0.44 Total: -60.36 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.08 Total: -13.67 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.71 -8.94 -40.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575593068.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.616 kcal (2) G-P(sol) polarization free energy of solvation -31.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds