Wall clock time and date at job start Wed Apr 1 2020 03:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47269 * 2 1 4 4 C 1.53001 * 109.47421 * 120.00451 * 2 1 3 5 5 N 1.46501 * 109.47425 * 171.20344 * 4 2 1 6 6 C 1.46494 * 120.00348 * 277.60555 * 5 4 2 7 7 C 1.50702 * 109.47113 * 277.16035 * 6 5 4 8 8 H 1.08000 * 119.99823 * 359.97438 * 7 6 5 9 9 C 1.37870 * 120.00261 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00015 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00158 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47058 * 60.00359 * 11 9 7 13 13 H 1.48501 * 109.47092 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47053 * 300.00536 * 11 9 7 15 15 C 1.34773 * 119.99558 * 97.59899 * 5 4 2 16 16 O 1.21711 * 120.00480 * 5.09643 * 15 5 4 17 17 C 1.46588 * 119.99736 * 185.09593 * 15 5 4 18 18 C 1.40634 * 126.54190 * 333.22905 * 17 15 5 19 19 N 1.30694 * 108.73163 * 179.97438 * 18 17 15 20 20 N 1.39909 * 109.51687 * 359.97438 * 19 18 17 21 21 C 1.36317 * 132.16180 * 179.97438 * 20 19 18 22 22 C 1.35751 * 119.15495 * 179.76260 * 21 20 19 23 23 C 1.50698 * 120.32040 * 180.26606 * 22 21 20 24 24 C 1.52996 * 109.47546 * 270.23555 * 23 22 21 25 25 N 1.46904 * 109.47391 * 179.97438 * 24 23 22 26 26 C 1.39966 * 119.35784 * 0.50703 * 22 21 20 27 27 N 1.31507 * 120.10221 * 359.48425 * 26 22 21 28 28 C 1.33378 * 120.85470 * 0.25871 * 27 26 22 29 29 H 1.09006 * 109.47022 * 299.99742 * 1 2 3 30 30 H 1.08995 * 109.47351 * 59.99680 * 1 2 3 31 31 H 1.09004 * 109.47465 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47022 * 240.00258 * 2 1 3 33 33 H 1.09000 * 109.47505 * 185.55496 * 3 2 1 34 34 H 1.08996 * 109.47580 * 305.55531 * 3 2 1 35 35 H 1.09005 * 109.46880 * 65.55512 * 3 2 1 36 36 H 1.09000 * 109.47013 * 51.20695 * 4 2 1 37 37 H 1.08994 * 109.47103 * 291.20590 * 4 2 1 38 38 H 1.09008 * 109.47081 * 37.15745 * 6 5 4 39 39 H 1.08994 * 109.47625 * 157.15754 * 6 5 4 40 40 H 0.97000 * 120.00322 * 179.97438 * 10 9 7 41 41 H 1.08004 * 125.63567 * 359.97432 * 18 17 15 42 42 H 1.07998 * 120.41934 * 0.02562 * 21 20 19 43 43 H 1.08996 * 109.47424 * 30.24446 * 23 22 21 44 44 H 1.09007 * 109.47185 * 150.23908 * 23 22 21 45 45 H 1.08996 * 109.47486 * 300.00853 * 24 23 22 46 46 H 1.09009 * 109.46883 * 60.00440 * 24 23 22 47 47 H 1.00903 * 111.00096 * 179.97438 * 25 24 23 48 48 H 1.00890 * 111.00274 * 303.95887 * 25 24 23 49 49 H 1.07993 * 119.94764 * 179.76743 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4897 -0.9070 1.1482 6 6 4.0327 -2.0315 0.3824 7 6 4.0327 -3.2704 1.2405 8 1 3.6654 -3.2244 2.2551 9 6 4.5016 -4.4623 0.7305 10 7 4.9493 -4.5182 -0.5048 11 14 4.5022 -5.9977 1.7945 12 1 3.1123 -6.3094 2.2147 13 1 5.0525 -7.1378 1.0181 14 1 5.3427 -5.7665 2.9967 15 6 4.3238 -0.0430 1.7599 16 8 3.8746 0.8361 2.4718 17 6 5.7722 -0.1621 1.5679 18 6 6.4817 -1.3353 1.2549 19 7 7.7528 -1.0452 1.1633 20 7 7.9396 0.3195 1.4084 21 6 9.0567 1.1005 1.4311 22 6 8.9320 2.4253 1.6996 23 6 10.1487 3.3141 1.7256 24 6 10.7308 3.3408 3.1402 25 7 11.9172 4.2067 3.1653 26 6 7.6630 2.9568 1.9571 27 7 6.6035 2.1783 1.9281 28 6 6.7182 0.8768 1.6598 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1254 1.4441 -0.0995 34 1 1.5977 1.9842 -0.8360 35 1 1.7601 1.9267 0.9356 36 1 1.5541 -1.6936 1.3311 37 1 1.8107 -0.1250 2.1322 38 1 3.4163 -2.2012 -0.5006 39 1 5.0529 -1.8028 0.0746 40 1 5.2796 -5.3567 -0.8636 41 1 6.0479 -2.3143 1.1137 42 1 10.0280 0.6715 1.2339 43 1 10.8958 2.9277 1.0324 44 1 9.8669 4.3247 1.4296 45 1 9.9837 3.7273 3.8334 46 1 11.0127 2.3303 3.4362 47 1 12.3202 4.2413 4.0898 48 1 12.5986 3.9064 2.4846 49 1 7.5533 4.0087 2.1755 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575593068.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:18 Heat of formation + Delta-G solvation = 59.902519 kcal Electronic energy + Delta-G solvation = -30801.020643 eV Core-core repulsion = 26764.375661 eV Total energy + Delta-G solvation = -4036.644982 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.56045 -40.75232 -39.37903 -37.37978 -36.65543 -35.93236 -34.90748 -34.16170 -32.95522 -30.84594 -29.53200 -28.58053 -27.99984 -27.05410 -25.91902 -25.04420 -24.38548 -23.26474 -22.33033 -21.27618 -20.41567 -19.30923 -18.55727 -18.30804 -17.91554 -17.30089 -16.98007 -16.83205 -16.40787 -16.16745 -16.03123 -15.65371 -15.40987 -15.08623 -14.86662 -14.68761 -14.50872 -14.39768 -14.16149 -13.79700 -13.70489 -13.50998 -13.11920 -13.04038 -12.96596 -12.81807 -12.66224 -12.51842 -12.45803 -12.26830 -12.23944 -12.08500 -11.86847 -11.82546 -11.58660 -11.51281 -10.85940 -10.77596 -10.57427 -10.43976 -9.57852 -9.40623 -8.99591 -8.20622 -6.37293 -0.58571 -0.31892 0.94463 1.11131 1.43328 1.44281 1.51978 2.04213 2.29965 2.39757 2.61435 2.78686 3.00884 3.08546 3.36320 3.50061 3.84702 3.90051 3.96496 4.04948 4.11107 4.19760 4.23914 4.24849 4.31921 4.40754 4.49637 4.68697 4.75359 4.76217 4.80067 4.89416 4.92970 4.94596 5.01926 5.08627 5.14429 5.19044 5.21202 5.22530 5.24088 5.41328 5.43434 5.46872 5.67933 5.93363 6.03914 6.24124 6.25056 6.54727 6.61068 6.63717 6.84131 7.31684 7.50206 8.82577 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.010095 B = 0.003502 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2772.909716 B = 7992.541947 C =10194.703057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.108 4.108 3 C -0.124 4.124 4 C 0.123 3.877 5 N -0.594 5.594 6 C 0.237 3.763 7 C -0.549 4.549 8 H 0.053 0.947 9 C 0.031 3.969 10 N -0.910 5.910 11 Si 0.952 3.048 12 H -0.271 1.271 13 H -0.279 1.279 14 H -0.274 1.274 15 C 0.595 3.405 16 O -0.585 6.585 17 C -0.318 4.318 18 C 0.129 3.871 19 N -0.338 5.338 20 N -0.308 5.308 21 C 0.152 3.848 22 C -0.166 4.166 23 C -0.049 4.049 24 C 0.063 3.937 25 N -0.856 5.856 26 C 0.195 3.805 27 N -0.484 5.484 28 C 0.299 3.701 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.019 0.981 34 H 0.068 0.932 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.017 0.983 39 H 0.042 0.958 40 H 0.271 0.729 41 H 0.224 0.776 42 H 0.212 0.788 43 H 0.099 0.901 44 H 0.109 0.891 45 H 0.071 0.929 46 H 0.027 0.973 47 H 0.351 0.649 48 H 0.349 0.651 49 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.918 15.498 2.056 19.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.127 4.127 3 C -0.182 4.182 4 C 0.001 3.999 5 N -0.323 5.323 6 C 0.116 3.884 7 C -0.587 4.587 8 H 0.072 0.928 9 C -0.171 4.171 10 N -0.548 5.548 11 Si 0.777 3.223 12 H -0.196 1.196 13 H -0.204 1.204 14 H -0.199 1.199 15 C 0.386 3.614 16 O -0.468 6.468 17 C -0.335 4.335 18 C -0.050 4.050 19 N -0.160 5.160 20 N -0.076 5.076 21 C 0.017 3.983 22 C -0.173 4.173 23 C -0.088 4.088 24 C -0.068 4.068 25 N -0.388 5.388 26 C 0.015 3.985 27 N -0.196 5.196 28 C 0.066 3.934 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.038 0.962 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.035 0.965 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.239 0.761 42 H 0.229 0.771 43 H 0.117 0.883 44 H 0.127 0.873 45 H 0.089 0.911 46 H 0.045 0.955 47 H 0.164 0.836 48 H 0.163 0.837 49 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 10.437 15.937 1.952 19.150 hybrid contribution 0.387 -2.344 0.615 2.454 sum 10.825 13.593 2.566 17.565 Atomic orbital electron populations 1.21690 0.92325 1.02353 1.02667 1.21451 0.97591 0.96123 0.97564 1.21617 0.99036 0.95941 1.01578 1.21498 0.79582 1.00372 0.98480 1.47886 1.06321 1.27326 1.50814 1.19560 0.95115 0.82821 0.90903 1.21583 1.43336 0.94316 0.99477 0.92842 1.25594 0.94296 1.01250 0.96000 1.70004 1.41387 1.28141 1.15295 0.85695 0.78711 0.78999 0.78882 1.19601 1.20377 1.19938 1.16926 0.84804 0.80760 0.78954 1.90652 1.78382 1.37040 1.40730 1.19559 0.94539 0.92504 1.26872 1.25370 0.89254 1.01020 0.89391 1.77586 1.18817 0.87661 1.31976 1.47312 1.07413 1.08839 1.43996 1.22787 0.90985 0.89938 0.94592 1.20759 0.98868 0.92598 1.05036 1.20406 0.91474 0.99040 0.97899 1.21768 0.93672 0.94897 0.96491 1.58668 1.10864 1.56829 1.12398 1.24361 0.86131 1.01569 0.86476 1.68345 1.33962 1.00336 1.16938 1.20305 0.85451 0.90695 0.96944 0.91968 0.91076 0.92188 0.92422 0.96214 0.91265 0.93149 0.90934 0.91118 0.96491 0.94037 0.92011 0.76081 0.77126 0.88299 0.87257 0.91068 0.95510 0.83613 0.83744 0.76248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.53 9.18 71.98 0.66 -2.87 16 2 C -0.11 -3.74 3.08 -10.80 -0.03 -3.77 16 3 C -0.12 -4.32 8.46 71.98 0.61 -3.71 16 4 C 0.12 5.04 4.97 86.38 0.43 5.47 16 5 N -0.59 -28.01 2.32 -830.98 -1.93 -29.93 16 6 C 0.24 11.99 4.70 85.63 0.40 12.39 16 7 C -0.55 -28.99 7.81 25.60 0.20 -28.79 16 8 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 9 C 0.03 1.59 5.26 84.65 0.44 2.04 16 10 N -0.91 -49.54 13.29 21.44 0.28 -49.26 16 11 Si 0.95 41.95 29.54 68.60 2.03 43.98 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 13 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 14 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 15 C 0.60 29.34 6.45 86.42 0.56 29.90 16 16 O -0.59 -30.30 16.11 -4.38 -0.07 -30.37 16 17 C -0.32 -14.99 5.76 -19.89 -0.11 -15.11 16 18 C 0.13 6.01 9.56 85.45 0.82 6.83 16 19 N -0.34 -14.13 12.58 -56.59 -0.71 -14.84 16 20 N -0.31 -10.79 3.86 -191.79 -0.74 -11.53 16 21 C 0.15 3.31 10.94 83.42 0.91 4.22 16 22 C -0.17 -2.68 5.11 -20.02 -0.10 -2.78 16 23 C -0.05 -0.38 5.62 29.85 0.17 -0.21 16 24 C 0.06 0.54 6.77 86.30 0.58 1.13 16 25 N -0.86 -6.17 9.62 -186.71 -1.80 -7.97 16 26 C 0.20 4.13 10.97 85.16 0.93 5.06 16 27 N -0.48 -16.89 10.47 -191.87 -2.01 -18.90 16 28 C 0.30 12.11 7.80 133.98 1.04 13.16 16 29 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.06 2.16 7.79 -2.38 -0.02 2.14 16 33 H 0.02 0.78 7.20 -2.39 -0.02 0.76 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.05 1.78 8.12 -2.38 -0.02 1.77 16 36 H 0.07 2.93 8.11 -2.39 -0.02 2.91 16 37 H 0.07 2.94 7.12 -2.39 -0.02 2.92 16 38 H 0.02 0.91 7.77 -2.38 -0.02 0.89 16 39 H 0.04 2.21 4.12 -2.39 -0.01 2.20 16 40 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 41 H 0.22 11.35 4.21 -2.91 -0.01 11.34 16 42 H 0.21 2.91 8.06 -2.91 -0.02 2.89 16 43 H 0.10 0.45 8.09 -2.39 -0.02 0.43 16 44 H 0.11 0.63 8.10 -2.38 -0.02 0.61 16 45 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.03 0.25 8.14 -2.38 -0.02 0.23 16 47 H 0.35 2.00 9.08 -89.69 -0.81 1.18 16 48 H 0.35 1.54 8.99 -89.70 -0.81 0.73 16 49 H 0.22 2.58 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -74.36 401.32 1.94 -72.42 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: -0.63 Total: 23.45 kcal Atomic # 6 Polarization: 15.44 SS G_CDS: 7.51 Total: 22.96 kcal Atomic # 7 Polarization: -125.53 SS G_CDS: -6.90 Total: -132.43 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.07 Total: -30.37 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -74.36 1.94 -72.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575593068.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.319 kcal (2) G-P(sol) polarization free energy of solvation -74.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds