Wall clock time and date at job start Wed Apr 1 2020 04:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.46930 * 2 1 4 4 C 1.36452 * 127.13799 * 92.04537 * 3 2 1 5 5 N 1.38575 * 126.47493 * 359.97438 * 4 3 2 6 6 C 1.46903 * 110.99648 * 289.07009 * 5 4 3 7 7 C 1.46899 * 111.00099 * 165.11828 * 5 4 3 8 8 C 1.50701 * 109.46948 * 190.00005 * 7 5 4 9 9 C 1.38092 * 119.58645 * 94.99986 * 8 7 5 10 10 C 1.38784 * 119.28880 * 179.97438 * 9 8 7 11 11 C 1.38415 * 118.48349 * 0.02562 * 10 9 8 12 12 C 1.38878 * 119.11718 * 359.97438 * 11 10 9 13 13 O 1.35672 * 119.68290 * 180.02562 * 12 11 10 14 14 N 1.31937 * 119.58044 * 274.71902 * 8 7 5 15 15 N 1.31215 * 107.05002 * 180.23819 * 4 3 2 16 16 N 1.28533 * 109.86283 * 359.75708 * 15 4 3 17 17 C 1.30291 * 110.05090 * 359.97438 * 16 15 4 18 18 C 1.50705 * 126.34594 * 179.97438 * 17 16 15 19 19 C 1.52992 * 109.47227 * 234.05087 * 18 17 16 20 20 C 1.53001 * 109.46995 * 114.04698 * 18 17 16 21 21 C 1.50700 * 109.47057 * 354.05309 * 18 17 16 22 22 H 1.08000 * 120.00094 * 359.97438 * 21 18 17 23 23 C 1.37870 * 120.00185 * 180.02562 * 21 18 17 24 24 N 1.31520 * 119.99615 * 359.71779 * 23 21 18 25 25 Si 1.86800 * 120.00058 * 179.97438 * 23 21 18 26 26 H 1.48494 * 109.47183 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47195 * 120.00015 * 25 23 21 28 28 H 1.48506 * 109.46997 * 239.99796 * 25 23 21 29 29 H 1.08996 * 109.46984 * 307.74168 * 1 2 3 30 30 H 1.08997 * 109.47218 * 67.74149 * 1 2 3 31 31 H 1.08997 * 109.47160 * 187.74681 * 1 2 3 32 32 H 1.08993 * 109.46676 * 239.99478 * 2 1 3 33 33 H 1.09004 * 109.46892 * 119.99941 * 2 1 3 34 34 H 1.09002 * 109.47356 * 70.10930 * 6 5 4 35 35 H 1.09008 * 109.46882 * 190.10424 * 6 5 4 36 36 H 1.08996 * 109.46958 * 310.10165 * 6 5 4 37 37 H 1.08997 * 109.46821 * 309.99395 * 7 5 4 38 38 H 1.08997 * 109.47186 * 69.99973 * 7 5 4 39 39 H 1.08000 * 120.35096 * 359.95201 * 9 8 7 40 40 H 1.08001 * 120.75370 * 180.02562 * 10 9 8 41 41 H 1.08008 * 120.44216 * 179.97438 * 11 10 9 42 42 H 0.96697 * 114.00540 * 90.00109 * 13 12 11 43 43 H 1.09001 * 109.47328 * 169.84773 * 19 18 17 44 44 H 1.09002 * 109.46854 * 289.85158 * 19 18 17 45 45 H 1.09001 * 109.47256 * 49.84783 * 19 18 17 46 46 H 1.08999 * 109.47249 * 304.28788 * 20 18 17 47 47 H 1.09008 * 109.46950 * 64.28470 * 20 18 17 48 48 H 1.09002 * 109.47318 * 184.28476 * 20 18 17 49 49 H 0.96999 * 119.99583 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3295 2.1450 1.0871 5 7 2.2435 1.7607 2.4157 6 6 0.8419 1.6432 2.8400 7 6 2.9793 2.6916 3.2817 8 6 3.0726 2.1173 4.6718 9 6 4.1948 1.4019 5.0401 10 6 4.2745 0.8762 6.3221 11 6 3.2176 1.0899 7.1900 12 6 2.1200 1.8192 6.7516 13 8 1.0780 2.0360 7.5929 14 7 2.0833 2.3092 5.5235 15 7 2.7202 3.3139 0.6369 16 7 2.6770 3.3238 -0.6477 17 6 2.2603 2.1712 -1.0896 18 6 2.0724 1.7831 -2.5336 19 6 0.6479 1.2651 -2.7414 20 6 3.0729 0.6854 -2.9010 21 6 2.3024 2.9864 -3.4112 22 1 2.5586 3.9372 -2.9676 23 6 2.1849 2.8738 -4.7802 24 7 1.8774 1.7149 -5.3207 25 14 2.4693 4.3656 -5.8679 26 1 2.8050 5.5386 -5.0215 27 1 3.5910 4.0910 -6.8015 28 1 1.2373 4.6533 -6.6456 29 1 -0.3633 0.6290 0.8126 30 1 -0.3633 0.3893 -0.9511 31 1 -0.3633 -1.0183 0.1385 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.3870 0.7790 2.3559 35 1 0.7992 1.5179 3.9220 36 1 0.2998 2.5455 2.5570 37 1 3.9825 2.8428 2.8830 38 1 2.4548 3.6464 3.3174 39 1 5.0017 1.2528 4.3379 40 1 5.1413 0.3132 6.6353 41 1 3.2461 0.6948 8.1948 42 1 1.1582 2.8437 8.1185 43 1 0.4533 1.1551 -3.8082 44 1 0.5376 0.2983 -2.2502 45 1 -0.0621 1.9730 -2.3136 46 1 4.0843 1.0272 -2.6812 47 1 2.8581 -0.2114 -2.3196 48 1 2.9891 0.4582 -3.9637 49 1 1.7943 1.6358 -6.2839 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650306741.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:49 Heat of formation + Delta-G solvation = 103.615032 kcal Electronic energy + Delta-G solvation = -31116.983224 eV Core-core repulsion = 27082.233759 eV Total energy + Delta-G solvation = -4034.749465 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.30612 -40.82804 -37.99024 -36.87254 -36.05208 -34.66560 -32.87415 -31.42814 -30.99241 -30.24343 -28.59580 -27.43348 -25.97662 -25.36612 -24.78369 -23.62755 -23.57907 -22.40779 -21.56168 -20.14632 -19.04494 -18.87746 -17.05323 -16.96136 -16.61879 -16.10693 -15.99987 -15.62890 -15.37681 -14.96194 -14.59833 -14.33267 -14.31138 -13.71532 -13.40679 -13.21908 -13.03808 -12.80654 -12.78734 -12.36468 -12.32226 -12.11799 -11.95549 -11.87365 -11.61109 -11.36301 -11.30412 -10.95344 -10.73045 -10.53893 -10.38466 -10.24899 -10.16232 -10.01531 -9.96286 -9.75217 -9.71707 -9.50900 -9.22793 -9.01854 -8.70770 -8.35092 -7.72795 -6.01392 -4.07515 0.65037 0.87653 2.46654 2.77644 3.15174 3.33451 3.41488 3.43081 3.51628 3.70846 4.07057 4.28345 4.42874 4.46115 4.72993 4.75995 4.92365 5.04029 5.11349 5.20167 5.21448 5.27527 5.28777 5.34352 5.48414 5.53473 5.68589 5.75249 5.76111 5.79638 5.84743 5.89077 5.99781 6.15632 6.18314 6.26199 6.49168 6.59660 6.66728 6.72488 6.76918 6.84542 7.13808 7.14700 7.25511 7.36064 7.62160 7.64421 7.83287 7.87473 8.12205 8.34107 9.00497 9.55154 9.67285 11.01498 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.022345 B = 0.002553 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.755594 B =10966.615107 C =11350.030615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.106 3.894 3 N -0.475 5.475 4 C 0.313 3.687 5 N -0.449 5.449 6 C 0.016 3.984 7 C 0.122 3.878 8 C 0.162 3.838 9 C -0.157 4.157 10 C -0.060 4.060 11 C -0.188 4.188 12 C 0.309 3.691 13 O -0.483 6.483 14 N -0.496 5.496 15 N -0.329 5.329 16 N -0.287 5.287 17 C 0.242 3.758 18 C 0.147 3.853 19 C -0.143 4.143 20 C -0.133 4.133 21 C -0.488 4.488 22 H 0.077 0.923 23 C 0.060 3.940 24 N -0.895 5.895 25 Si 0.898 3.102 26 H -0.270 1.270 27 H -0.285 1.285 28 H -0.286 1.286 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.039 0.961 37 H 0.104 0.896 38 H 0.073 0.927 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.400 0.600 43 H 0.099 0.901 44 H 0.025 0.975 45 H 0.026 0.974 46 H 0.030 0.970 47 H 0.010 0.990 48 H 0.100 0.900 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.066 -6.393 22.381 23.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.017 4.017 3 N -0.169 5.169 4 C -0.043 4.043 5 N -0.173 5.173 6 C -0.131 4.131 7 C -0.006 4.006 8 C 0.024 3.976 9 C -0.178 4.178 10 C -0.086 4.086 11 C -0.209 4.209 12 C 0.129 3.871 13 O -0.290 6.290 14 N -0.216 5.216 15 N -0.173 5.173 16 N -0.124 5.124 17 C -0.025 4.025 18 C 0.144 3.856 19 C -0.201 4.201 20 C -0.191 4.191 21 C -0.526 4.526 22 H 0.096 0.904 23 C -0.139 4.139 24 N -0.535 5.535 25 Si 0.726 3.274 26 H -0.194 1.194 27 H -0.211 1.211 28 H -0.212 1.212 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.058 0.942 37 H 0.122 0.878 38 H 0.092 0.908 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.157 0.843 42 H 0.257 0.743 43 H 0.118 0.882 44 H 0.044 0.956 45 H 0.045 0.955 46 H 0.049 0.951 47 H 0.029 0.971 48 H 0.119 0.881 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.781 -5.533 21.841 22.545 hybrid contribution 0.087 -0.069 0.081 0.138 sum 0.868 -5.602 21.923 22.644 Atomic orbital electron populations 1.22649 0.94641 1.02759 1.04692 1.21859 0.95420 0.79894 1.04547 1.46309 1.51259 1.13481 1.05856 1.22204 1.06066 0.89147 0.86910 1.58538 1.14255 1.47769 0.96709 1.22799 0.85925 1.01621 1.02754 1.20844 1.00707 0.93473 0.85590 1.20811 0.88758 0.93679 0.94342 1.22025 1.00036 0.98472 0.97251 1.21529 0.97974 0.96309 0.92792 1.22102 0.93609 1.03186 1.01989 1.19135 0.86152 0.94249 0.87514 1.84791 1.42673 1.47376 1.54193 1.66959 1.29065 1.21965 1.03576 1.74535 1.22571 1.14852 1.05366 1.74063 1.19300 1.18444 1.00630 1.26145 0.97334 0.86784 0.92279 1.16899 0.93388 0.95957 0.79367 1.22195 0.96450 0.96304 1.05123 1.21944 0.97627 0.95039 1.04538 1.21144 1.45949 0.95279 0.90263 0.90449 1.24873 0.95050 0.96186 0.97833 1.69779 1.49317 1.23194 1.11171 0.86405 0.77595 0.83169 0.80187 1.19434 1.21118 1.21187 0.92231 0.89419 0.90960 0.88060 0.89437 0.90781 0.89104 0.94211 0.87751 0.90828 0.83974 0.84142 0.84285 0.74282 0.88238 0.95597 0.95499 0.95077 0.97076 0.88141 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.54 9.43 37.16 0.35 -2.19 16 2 C 0.11 1.59 5.44 -4.04 -0.02 1.56 16 3 N -0.47 -9.01 2.81 -114.09 -0.32 -9.33 16 4 C 0.31 5.89 6.87 -318.89 -2.19 3.70 16 5 N -0.45 -6.77 4.77 -183.76 -0.88 -7.64 16 6 C 0.02 0.23 9.19 60.07 0.55 0.78 16 7 C 0.12 1.65 4.69 -4.98 -0.02 1.63 16 8 C 0.16 1.88 5.73 -82.60 -0.47 1.40 16 9 C -0.16 -1.46 9.71 -39.43 -0.38 -1.84 16 10 C -0.06 -0.45 10.17 -39.31 -0.40 -0.85 16 11 C -0.19 -1.47 10.04 -39.28 -0.39 -1.86 16 12 C 0.31 3.10 7.74 -17.12 -0.13 2.97 16 13 O -0.48 -4.18 13.56 -18.72 -0.25 -4.43 16 14 N -0.50 -5.97 8.57 -9.55 -0.08 -6.05 16 15 N -0.33 -7.26 11.39 30.31 0.35 -6.92 16 16 N -0.29 -7.14 11.00 32.99 0.36 -6.78 16 17 C 0.24 5.54 6.32 -154.02 -0.97 4.57 16 18 C 0.15 3.49 0.50 -156.81 -0.08 3.41 16 19 C -0.14 -3.15 6.85 37.15 0.25 -2.90 16 20 C -0.13 -3.02 8.19 37.16 0.30 -2.72 16 21 C -0.49 -13.16 7.91 -34.44 -0.27 -13.44 16 22 H 0.08 2.23 6.95 -52.49 -0.36 1.86 16 23 C 0.06 1.60 5.10 -17.82 -0.09 1.51 16 24 N -0.89 -23.49 9.31 55.43 0.52 -22.97 16 25 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 26 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 29 H 0.06 0.80 5.75 -51.93 -0.30 0.50 16 30 H 0.09 1.34 4.64 -51.93 -0.24 1.10 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 1.55 4.95 -51.93 -0.26 1.29 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.07 0.96 5.10 -51.93 -0.26 0.69 16 35 H 0.09 1.22 5.67 -51.92 -0.29 0.92 16 36 H 0.04 0.60 8.05 -51.93 -0.42 0.18 16 37 H 0.10 1.41 7.88 -51.93 -0.41 1.00 16 38 H 0.07 1.09 8.12 -51.93 -0.42 0.66 16 39 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 41 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 42 H 0.40 1.46 9.06 45.56 0.41 1.88 16 43 H 0.10 2.43 5.87 -51.93 -0.31 2.12 16 44 H 0.03 0.48 4.36 -51.93 -0.23 0.26 16 45 H 0.03 0.59 7.88 -51.93 -0.41 0.18 16 46 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.01 0.21 5.76 -51.92 -0.30 -0.09 16 48 H 0.10 2.47 5.96 -51.93 -0.31 2.16 16 49 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 LS Contribution 379.08 15.07 5.71 5.71 Total: -1.00 -32.23 379.08 -9.37 -41.60 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.78 Total: 4.82 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -3.97 Total: -4.26 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: -0.05 Total: -59.69 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.25 Total: -4.43 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.23 -9.37 -41.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650306741.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.211 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds