Wall clock time and date at job start Wed Apr 1 2020 04:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46498 * 109.46820 * 2 1 4 4 C 1.36740 * 127.13940 * 274.62708 * 3 2 1 5 5 C 1.50698 * 126.34881 * 359.95284 * 4 3 2 6 6 H 1.09008 * 109.46653 * 359.97438 * 5 4 3 7 7 C 1.52995 * 109.47291 * 239.99767 * 5 4 3 8 8 C 1.52993 * 109.47254 * 119.99348 * 5 4 3 9 9 C 1.50708 * 109.47024 * 185.00012 * 8 5 4 10 10 H 1.07993 * 120.00279 * 0.02562 * 9 8 5 11 11 C 1.37881 * 119.99793 * 179.97438 * 9 8 5 12 12 N 1.31520 * 119.99934 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99892 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46851 * 90.00328 * 13 11 9 15 15 H 1.48502 * 109.47051 * 210.00320 * 13 11 9 16 16 H 1.48498 * 109.47084 * 330.00534 * 13 11 9 17 17 N 1.30297 * 107.30496 * 179.97438 * 4 3 2 18 18 N 1.28525 * 110.05211 * 359.73095 * 17 4 3 19 19 C 1.31217 * 109.86365 * 0.45495 * 18 17 4 20 20 N 1.38579 * 126.47302 * 179.82788 * 19 18 17 21 21 C 1.46898 * 110.99499 * 291.20106 * 20 19 18 22 22 C 1.46896 * 111.00470 * 55.15937 * 20 19 18 23 23 C 1.50694 * 109.47256 * 170.00354 * 22 20 19 24 24 C 1.38090 * 119.58675 * 94.99891 * 23 22 20 25 25 C 1.38792 * 119.28816 * 179.97438 * 24 23 22 26 26 C 1.38426 * 118.48220 * 359.97438 * 25 24 23 27 27 C 1.38875 * 119.11537 * 0.02562 * 26 25 24 28 28 O 1.35679 * 119.68123 * 180.02562 * 27 26 25 29 29 N 1.31941 * 119.58102 * 274.72523 * 23 22 20 30 30 H 1.08999 * 109.46932 * 59.99503 * 1 2 3 31 31 H 1.08994 * 109.47043 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46969 * 300.00145 * 1 2 3 33 33 H 1.08999 * 109.46802 * 240.00331 * 2 1 3 34 34 H 1.08999 * 109.46932 * 120.00497 * 2 1 3 35 35 H 1.09004 * 109.47061 * 59.99481 * 7 5 4 36 36 H 1.08996 * 109.47288 * 179.97438 * 7 5 4 37 37 H 1.09001 * 109.47381 * 299.99862 * 7 5 4 38 38 H 1.09000 * 109.47887 * 305.00127 * 8 5 4 39 39 H 1.08998 * 109.47216 * 65.00559 * 8 5 4 40 40 H 0.96999 * 119.99628 * 179.97438 * 12 11 9 41 41 H 1.09003 * 109.46942 * 189.95766 * 21 20 19 42 42 H 1.08999 * 109.47598 * 309.96039 * 21 20 19 43 43 H 1.09003 * 109.46958 * 69.96082 * 21 20 19 44 44 H 1.08998 * 109.47196 * 50.00142 * 22 20 19 45 45 H 1.09000 * 109.46618 * 290.00212 * 22 20 19 46 46 H 1.08001 * 120.35302 * 359.95338 * 24 23 22 47 47 H 1.07997 * 120.75467 * 180.02562 * 25 24 23 48 48 H 1.08000 * 120.43464 * 179.97438 * 26 25 24 49 49 H 0.96695 * 113.99764 * 90.00321 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2106 2.1889 -1.0865 5 6 1.9589 1.8236 -2.5267 6 1 1.5929 0.7983 -2.5828 7 6 3.2625 1.9434 -3.3186 8 6 0.9139 2.7717 -3.1182 9 6 0.5717 2.3316 -4.5184 10 1 1.0513 1.4625 -4.9437 11 6 -0.3544 3.0381 -5.2561 12 7 -0.9388 4.0963 -4.7381 13 14 -0.7779 2.4931 -6.9919 14 1 -1.9123 1.5358 -6.9472 15 1 -1.1607 3.6768 -7.8028 16 1 0.4025 1.8334 -7.6055 17 7 2.6522 3.3328 -0.6458 18 7 2.7459 3.3049 0.6357 19 6 2.3752 2.1288 1.0843 20 7 2.3458 1.7244 2.4095 21 6 3.7053 1.5987 2.9517 22 6 1.5376 2.6429 3.2225 23 6 1.3243 2.0479 4.5904 24 6 2.1695 2.3971 5.6251 25 6 1.9671 1.8458 6.8827 26 6 0.9172 0.9601 7.0539 27 6 0.1069 0.6545 5.9682 28 8 -0.9257 -0.2117 6.1233 29 7 0.3291 1.2040 4.7857 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 4.0070 1.2679 -2.8971 36 1 3.0805 1.6787 -4.3601 37 1 3.6288 2.9684 -3.2625 38 1 0.0153 2.7524 -2.5016 39 1 1.3154 3.7847 -3.1437 40 1 -1.5901 4.5935 -5.2572 41 1 3.6639 1.1146 3.9274 42 1 4.3128 0.9990 2.2740 43 1 4.1478 2.5894 3.0561 44 1 0.5728 2.8014 2.7407 45 1 2.0570 3.5965 3.3179 46 1 2.9795 3.0915 5.4575 47 1 2.6135 2.1026 7.7088 48 1 0.7312 0.5122 8.0189 49 1 -1.7582 0.2100 6.3767 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650313994.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:54 Heat of formation + Delta-G solvation = 78.487948 kcal Electronic energy + Delta-G solvation = -30393.411358 eV Core-core repulsion = 26357.572300 eV Total energy + Delta-G solvation = -4035.839058 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.60976 -40.86953 -38.11568 -36.92596 -35.58083 -34.85392 -32.98662 -32.20810 -31.24284 -30.22424 -28.75567 -27.77665 -26.93331 -25.31826 -24.18441 -23.62153 -23.56483 -22.50865 -21.74428 -20.32458 -19.11160 -18.87572 -17.22002 -16.94730 -16.71411 -16.57537 -16.25472 -15.78244 -15.63232 -14.78479 -14.62781 -14.42848 -14.33460 -14.07496 -13.56818 -13.29617 -13.21451 -13.19376 -12.90077 -12.58939 -12.35484 -12.19910 -12.10041 -12.03596 -11.85774 -11.77073 -11.31497 -11.16356 -10.98719 -10.93024 -10.72274 -10.46747 -10.32453 -10.26530 -9.94871 -9.77095 -9.73467 -9.60882 -9.26523 -9.09995 -8.80509 -8.40738 -8.33868 -5.98806 -4.02286 0.56661 0.83917 2.09261 2.50424 3.10418 3.28835 3.32284 3.36844 3.39280 3.41649 3.85398 4.15258 4.36422 4.45159 4.64521 4.67305 4.78391 4.87988 4.96797 5.02017 5.09584 5.14494 5.19976 5.29802 5.30364 5.36738 5.47481 5.54228 5.60175 5.64287 5.71502 5.72883 5.78544 5.87248 6.05769 6.10257 6.11255 6.24762 6.32901 6.42805 6.49749 6.71614 6.83006 6.93057 7.06527 7.13233 7.46922 7.63227 7.64777 7.80482 8.00608 8.36537 9.03215 9.19745 9.61132 11.12241 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.017474 B = 0.002413 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.961337 B =11602.078976 C =12265.825715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.112 3.888 3 N -0.464 5.464 4 C 0.221 3.779 5 C -0.003 4.003 6 H 0.073 0.927 7 C -0.126 4.126 8 C 0.039 3.961 9 C -0.520 4.520 10 H 0.058 0.942 11 C 0.059 3.941 12 N -0.890 5.890 13 Si 0.891 3.109 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.273 1.273 17 N -0.287 5.287 18 N -0.312 5.312 19 C 0.316 3.684 20 N -0.454 5.454 21 C 0.033 3.967 22 C 0.116 3.884 23 C 0.165 3.835 24 C -0.173 4.173 25 C -0.060 4.060 26 C -0.188 4.188 27 C 0.312 3.688 28 O -0.483 6.483 29 N -0.482 5.482 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.031 0.969 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.014 0.986 39 H 0.032 0.968 40 H 0.261 0.739 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.047 0.953 44 H 0.097 0.903 45 H 0.076 0.924 46 H 0.140 0.860 47 H 0.141 0.859 48 H 0.140 0.860 49 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.744 -8.451 24.768 26.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.011 4.011 3 N -0.157 5.157 4 C -0.046 4.046 5 C -0.024 4.024 6 H 0.091 0.909 7 C -0.184 4.184 8 C 0.002 3.998 9 C -0.558 4.558 10 H 0.077 0.923 11 C -0.143 4.143 12 N -0.529 5.529 13 Si 0.719 3.281 14 H -0.208 1.208 15 H -0.212 1.212 16 H -0.198 1.198 17 N -0.126 5.126 18 N -0.156 5.156 19 C -0.040 4.040 20 N -0.179 5.179 21 C -0.115 4.115 22 C -0.011 4.011 23 C 0.026 3.974 24 C -0.194 4.194 25 C -0.085 4.085 26 C -0.209 4.209 27 C 0.133 3.867 28 O -0.290 6.290 29 N -0.201 5.201 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.050 0.950 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.032 0.968 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.115 0.885 45 H 0.094 0.906 46 H 0.158 0.842 47 H 0.159 0.841 48 H 0.158 0.842 49 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 5.719 -8.047 23.957 25.912 hybrid contribution -0.459 -0.493 0.058 0.676 sum 5.260 -8.541 24.016 26.026 Atomic orbital electron populations 1.22128 0.93559 1.03104 1.03830 1.21771 0.96252 0.78937 1.04151 1.46476 1.48990 1.13865 1.06321 1.25651 0.99279 0.87352 0.92284 1.20014 0.99086 1.01421 0.81889 0.90887 1.21680 0.94482 1.01687 1.00569 1.19096 0.91506 0.94295 0.94952 1.21135 1.23291 1.12522 0.98836 0.92347 1.25002 0.96140 0.94964 0.98161 1.69985 1.27731 1.17915 1.37263 0.86611 0.78693 0.78111 0.84675 1.20762 1.21245 1.19812 1.74051 1.18696 1.18140 1.01725 1.74509 1.20014 1.16316 1.04794 1.21984 1.05226 0.89241 0.87563 1.58361 1.14533 1.48780 0.96178 1.22487 0.86820 1.01702 1.00441 1.20993 0.99345 0.92606 0.88206 1.20713 0.89666 0.91862 0.95132 1.22062 1.01060 1.02660 0.93606 1.21493 0.95794 0.93928 0.97315 1.22132 0.98434 1.00480 0.99894 1.19174 0.90413 0.89167 0.87972 1.84797 1.20729 1.32480 1.90957 1.66952 1.20678 1.08082 1.24414 0.90940 0.90685 0.91755 0.89071 0.88700 0.95029 0.90639 0.92041 0.96775 0.94985 0.92942 0.90549 0.91166 0.93421 0.88484 0.90617 0.84179 0.84139 0.84228 0.74179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.24 37.16 0.38 -1.90 16 2 C 0.11 1.50 6.52 -4.04 -0.03 1.47 16 3 N -0.46 -7.90 2.81 -114.08 -0.32 -8.22 16 4 C 0.22 4.45 6.58 -154.01 -1.01 3.43 16 5 C 0.00 -0.06 2.71 -91.78 -0.25 -0.31 16 6 H 0.07 1.39 7.06 -51.92 -0.37 1.02 16 7 C -0.13 -2.39 8.98 37.16 0.33 -2.06 16 8 C 0.04 1.02 4.43 -27.88 -0.12 0.89 16 9 C -0.52 -14.09 8.41 -34.43 -0.29 -14.38 16 10 H 0.06 1.50 7.06 -52.49 -0.37 1.13 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 13 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 17 N -0.29 -6.30 12.18 32.99 0.40 -5.90 16 18 N -0.31 -6.15 12.11 30.31 0.37 -5.79 16 19 C 0.32 5.31 6.41 -318.87 -2.04 3.27 16 20 N -0.45 -6.03 4.75 -183.77 -0.87 -6.91 16 21 C 0.03 0.35 9.03 60.06 0.54 0.90 16 22 C 0.12 1.43 5.14 -4.98 -0.03 1.40 16 23 C 0.16 1.76 5.64 -82.60 -0.47 1.30 16 24 C -0.17 -1.35 8.51 -39.43 -0.34 -1.69 16 25 C -0.06 -0.38 10.17 -39.31 -0.40 -0.78 16 26 C -0.19 -1.37 10.04 -39.28 -0.39 -1.77 16 27 C 0.31 3.10 7.74 -17.13 -0.13 2.97 16 28 O -0.48 -4.27 13.56 -18.74 -0.25 -4.52 16 29 N -0.48 -5.84 10.30 -9.55 -0.10 -5.94 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.09 1.10 7.44 -51.93 -0.39 0.72 16 34 H 0.09 1.13 8.12 -51.93 -0.42 0.71 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 1.44 6.95 -51.93 -0.36 1.08 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.08 0.68 6.79 -51.93 -0.35 0.33 16 42 H 0.07 0.77 8.05 -51.93 -0.42 0.35 16 43 H 0.05 0.49 8.06 -51.93 -0.42 0.07 16 44 H 0.10 1.38 8.05 -51.93 -0.42 0.96 16 45 H 0.08 0.87 7.96 -51.93 -0.41 0.46 16 46 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 47 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 48 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 49 H 0.40 1.56 9.06 45.56 0.41 1.97 16 LS Contribution 409.94 15.07 6.18 6.18 Total: -1.00 -35.44 409.94 -10.10 -45.54 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -6.88 Total: 0.97 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -4.34 Total: -5.69 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: 0.21 Total: -58.75 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -0.25 Total: -4.52 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.44 -10.10 -45.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650313994.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.031 kcal (2) G-P(sol) polarization free energy of solvation -35.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds