Wall clock time and date at job start Wed Apr 1 2020 04:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46498 * 109.46820 * 2 1 4 4 C 1.36740 * 127.13940 * 274.62708 * 3 2 1 5 5 C 1.50698 * 126.34881 * 359.95284 * 4 3 2 6 6 H 1.09008 * 109.46653 * 359.97438 * 5 4 3 7 7 C 1.52995 * 109.47291 * 239.99767 * 5 4 3 8 8 C 1.52993 * 109.47254 * 119.99348 * 5 4 3 9 9 C 1.50708 * 109.47024 * 185.00012 * 8 5 4 10 10 H 1.07993 * 120.00279 * 0.02562 * 9 8 5 11 11 C 1.37881 * 119.99793 * 179.97438 * 9 8 5 12 12 N 1.31520 * 119.99934 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99892 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46851 * 90.00328 * 13 11 9 15 15 H 1.48502 * 109.47051 * 210.00320 * 13 11 9 16 16 H 1.48498 * 109.47084 * 330.00534 * 13 11 9 17 17 N 1.30297 * 107.30496 * 179.97438 * 4 3 2 18 18 N 1.28525 * 110.05211 * 359.73095 * 17 4 3 19 19 C 1.31217 * 109.86365 * 0.45495 * 18 17 4 20 20 N 1.38579 * 126.47302 * 179.82788 * 19 18 17 21 21 C 1.46898 * 110.99499 * 291.20106 * 20 19 18 22 22 C 1.46896 * 111.00470 * 55.15937 * 20 19 18 23 23 C 1.50694 * 109.47256 * 170.00354 * 22 20 19 24 24 C 1.38090 * 119.58675 * 94.99891 * 23 22 20 25 25 C 1.38792 * 119.28816 * 179.97438 * 24 23 22 26 26 C 1.38426 * 118.48220 * 359.97438 * 25 24 23 27 27 C 1.38875 * 119.11537 * 0.02562 * 26 25 24 28 28 O 1.35679 * 119.68123 * 180.02562 * 27 26 25 29 29 N 1.31941 * 119.58102 * 274.72523 * 23 22 20 30 30 H 1.08999 * 109.46932 * 59.99503 * 1 2 3 31 31 H 1.08994 * 109.47043 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46969 * 300.00145 * 1 2 3 33 33 H 1.08999 * 109.46802 * 240.00331 * 2 1 3 34 34 H 1.08999 * 109.46932 * 120.00497 * 2 1 3 35 35 H 1.09004 * 109.47061 * 59.99481 * 7 5 4 36 36 H 1.08996 * 109.47288 * 179.97438 * 7 5 4 37 37 H 1.09001 * 109.47381 * 299.99862 * 7 5 4 38 38 H 1.09000 * 109.47887 * 305.00127 * 8 5 4 39 39 H 1.08998 * 109.47216 * 65.00559 * 8 5 4 40 40 H 0.96999 * 119.99628 * 179.97438 * 12 11 9 41 41 H 1.09003 * 109.46942 * 189.95766 * 21 20 19 42 42 H 1.08999 * 109.47598 * 309.96039 * 21 20 19 43 43 H 1.09003 * 109.46958 * 69.96082 * 21 20 19 44 44 H 1.08998 * 109.47196 * 50.00142 * 22 20 19 45 45 H 1.09000 * 109.46618 * 290.00212 * 22 20 19 46 46 H 1.08001 * 120.35302 * 359.95338 * 24 23 22 47 47 H 1.07997 * 120.75467 * 180.02562 * 25 24 23 48 48 H 1.08000 * 120.43464 * 179.97438 * 26 25 24 49 49 H 0.96695 * 113.99764 * 90.00321 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2106 2.1889 -1.0865 5 6 1.9589 1.8236 -2.5267 6 1 1.5929 0.7983 -2.5828 7 6 3.2625 1.9434 -3.3186 8 6 0.9139 2.7717 -3.1182 9 6 0.5717 2.3316 -4.5184 10 1 1.0513 1.4625 -4.9437 11 6 -0.3544 3.0381 -5.2561 12 7 -0.9388 4.0963 -4.7381 13 14 -0.7779 2.4931 -6.9919 14 1 -1.9123 1.5358 -6.9472 15 1 -1.1607 3.6768 -7.8028 16 1 0.4025 1.8334 -7.6055 17 7 2.6522 3.3328 -0.6458 18 7 2.7459 3.3049 0.6357 19 6 2.3752 2.1288 1.0843 20 7 2.3458 1.7244 2.4095 21 6 3.7053 1.5987 2.9517 22 6 1.5376 2.6429 3.2225 23 6 1.3243 2.0479 4.5904 24 6 2.1695 2.3971 5.6251 25 6 1.9671 1.8458 6.8827 26 6 0.9172 0.9601 7.0539 27 6 0.1069 0.6545 5.9682 28 8 -0.9257 -0.2117 6.1233 29 7 0.3291 1.2040 4.7857 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 4.0070 1.2679 -2.8971 36 1 3.0805 1.6787 -4.3601 37 1 3.6288 2.9684 -3.2625 38 1 0.0153 2.7524 -2.5016 39 1 1.3154 3.7847 -3.1437 40 1 -1.5901 4.5935 -5.2572 41 1 3.6639 1.1146 3.9274 42 1 4.3128 0.9990 2.2740 43 1 4.1478 2.5894 3.0561 44 1 0.5728 2.8014 2.7407 45 1 2.0570 3.5965 3.3179 46 1 2.9795 3.0915 5.4575 47 1 2.6135 2.1026 7.7088 48 1 0.7312 0.5122 8.0189 49 1 -1.7582 0.2100 6.3767 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650313994.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:52 Heat of formation + Delta-G solvation = 53.637157 kcal Electronic energy + Delta-G solvation = -30394.488969 eV Core-core repulsion = 26357.572300 eV Total energy + Delta-G solvation = -4036.916669 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.05012 -41.54226 -39.02052 -37.76381 -37.10220 -36.39540 -34.25710 -33.60787 -32.06930 -31.47390 -30.20999 -28.85795 -28.60132 -26.40741 -25.84009 -24.92603 -24.22280 -23.78341 -23.01838 -21.57343 -20.61548 -19.59820 -18.65793 -18.25202 -17.80731 -17.54558 -17.18682 -16.99199 -16.57176 -16.46120 -16.02487 -15.60606 -15.34054 -15.04550 -14.95272 -14.74423 -14.32876 -14.09541 -13.93461 -13.87797 -13.64385 -13.36551 -13.27453 -13.02001 -12.95744 -12.81421 -12.79409 -12.65396 -12.62435 -12.44034 -12.33574 -12.24410 -11.94789 -11.59855 -11.44742 -11.17380 -11.11807 -10.88282 -10.54273 -10.43821 -10.15428 -9.87252 -9.77782 -8.15669 -6.27227 -0.07379 0.25070 0.70432 1.25526 1.43950 1.45570 1.56410 1.77476 2.41697 2.44780 2.58096 2.93505 3.18449 3.41162 3.43632 3.64925 3.76834 3.89761 3.94439 4.01757 4.07393 4.13852 4.26339 4.28740 4.32245 4.41971 4.43070 4.51848 4.56594 4.57167 4.62181 4.64214 4.69309 4.78878 4.83563 5.07595 5.08695 5.11830 5.14427 5.16857 5.18882 5.37302 5.46886 5.50478 5.53427 5.58370 5.70070 5.84306 6.17251 6.21672 6.63745 6.88473 6.98376 7.41826 7.70622 8.96908 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.017474 B = 0.002413 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.961337 B =11602.078976 C =12265.825715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.106 3.894 3 N -0.462 5.462 4 C 0.208 3.792 5 C 0.008 3.992 6 H 0.094 0.906 7 C -0.118 4.118 8 C 0.053 3.947 9 C -0.526 4.526 10 H 0.077 0.923 11 C -0.003 4.003 12 N -0.937 5.937 13 Si 0.966 3.034 14 H -0.273 1.273 15 H -0.289 1.289 16 H -0.255 1.255 17 N -0.326 5.326 18 N -0.342 5.342 19 C 0.337 3.663 20 N -0.453 5.453 21 C 0.035 3.965 22 C 0.121 3.879 23 C 0.146 3.854 24 C -0.167 4.167 25 C -0.049 4.049 26 C -0.179 4.179 27 C 0.292 3.708 28 O -0.497 6.497 29 N -0.524 5.524 30 H 0.041 0.959 31 H 0.107 0.893 32 H 0.047 0.953 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.041 0.959 38 H -0.023 1.023 39 H -0.010 1.010 40 H 0.261 0.739 41 H 0.100 0.900 42 H 0.068 0.932 43 H 0.051 0.949 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.161 0.839 47 H 0.180 0.820 48 H 0.166 0.834 49 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.185 -11.043 26.486 29.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.015 4.015 3 N -0.154 5.154 4 C -0.061 4.061 5 C -0.013 4.013 6 H 0.112 0.888 7 C -0.176 4.176 8 C 0.014 3.986 9 C -0.564 4.564 10 H 0.095 0.905 11 C -0.200 4.200 12 N -0.578 5.578 13 Si 0.791 3.209 14 H -0.198 1.198 15 H -0.215 1.215 16 H -0.179 1.179 17 N -0.166 5.166 18 N -0.186 5.186 19 C -0.020 4.020 20 N -0.179 5.179 21 C -0.112 4.112 22 C -0.006 4.006 23 C 0.008 3.992 24 C -0.187 4.187 25 C -0.075 4.075 26 C -0.200 4.200 27 C 0.113 3.887 28 O -0.307 6.307 29 N -0.244 5.244 30 H 0.060 0.940 31 H 0.125 0.875 32 H 0.066 0.934 33 H 0.130 0.870 34 H 0.135 0.865 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.060 0.940 38 H -0.005 1.005 39 H 0.009 0.991 40 H 0.070 0.930 41 H 0.118 0.882 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.098 0.902 46 H 0.179 0.821 47 H 0.197 0.803 48 H 0.184 0.816 49 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 7.164 -10.661 25.692 28.724 hybrid contribution -0.965 0.301 -0.273 1.047 sum 6.200 -10.360 25.419 28.140 Atomic orbital electron populations 1.22059 0.93866 1.04418 1.01441 1.22114 0.95894 0.77251 1.06215 1.46651 1.48386 1.14908 1.05481 1.25365 1.00259 0.87731 0.92705 1.19770 0.98363 1.00767 0.82415 0.88823 1.21593 0.94236 1.01357 1.00415 1.18824 0.91369 0.93575 0.94789 1.21565 1.22907 1.12733 0.99211 0.90494 1.26021 0.96117 0.94908 1.02986 1.70160 1.28727 1.19605 1.39279 0.85426 0.79060 0.77618 0.78823 1.19836 1.21516 1.17924 1.73945 1.20021 1.19549 1.03078 1.74417 1.22039 1.18101 1.04030 1.22401 1.02441 0.88260 0.88948 1.58647 1.16214 1.48550 0.94477 1.22567 0.85072 1.02206 1.01319 1.20892 0.97591 0.93000 0.89130 1.20456 0.90999 0.93040 0.94711 1.22268 1.00654 1.02450 0.93376 1.21940 0.95458 0.92478 0.97598 1.22436 0.97592 0.99884 1.00043 1.19473 0.91333 0.89640 0.88222 1.84750 1.21711 1.33143 1.91061 1.66787 1.21861 1.09438 1.26280 0.93974 0.87472 0.93375 0.87032 0.86524 0.91822 0.90674 0.93964 1.00506 0.99144 0.93013 0.88175 0.91275 0.93024 0.91656 0.90168 0.82128 0.80281 0.81612 0.72250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.31 10.24 71.98 0.74 -3.58 16 2 C 0.11 2.72 6.52 86.38 0.56 3.28 16 3 N -0.46 -15.84 2.81 -514.85 -1.45 -17.28 16 4 C 0.21 8.60 6.58 137.64 0.91 9.51 16 5 C 0.01 0.33 2.71 -11.54 -0.03 0.30 16 6 H 0.09 3.49 7.06 -2.38 -0.02 3.47 16 7 C -0.12 -4.44 8.98 71.98 0.65 -3.80 16 8 C 0.05 2.85 4.43 29.85 0.13 2.98 16 9 C -0.53 -29.01 8.41 25.60 0.22 -28.80 16 10 H 0.08 3.88 7.06 -2.91 -0.02 3.86 16 11 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 12 N -0.94 -58.54 13.29 21.45 0.28 -58.26 16 13 Si 0.97 43.88 29.54 68.60 2.03 45.90 16 14 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 15 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 16 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 17 N -0.33 -15.04 12.18 -49.54 -0.60 -15.65 16 18 N -0.34 -14.00 12.11 -58.00 -0.70 -14.71 16 19 C 0.34 11.48 6.41 260.11 1.67 13.15 16 20 N -0.45 -11.89 4.75 -735.31 -3.49 -15.38 16 21 C 0.03 0.69 9.03 127.69 1.15 1.84 16 22 C 0.12 3.05 5.14 85.56 0.44 3.48 16 23 C 0.15 3.01 5.64 42.51 0.24 3.25 16 24 C -0.17 -2.16 8.51 22.37 0.19 -1.97 16 25 C -0.05 -0.44 10.17 22.45 0.23 -0.21 16 26 C -0.18 -2.06 10.04 22.47 0.23 -1.83 16 27 C 0.29 5.46 7.74 84.78 0.66 6.11 16 28 O -0.50 -8.38 13.56 -89.97 -1.22 -9.60 16 29 N -0.52 -12.56 10.30 -296.98 -3.06 -15.62 16 30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.42 16 33 H 0.11 2.43 7.44 -2.39 -0.02 2.41 16 34 H 0.12 2.51 8.12 -2.39 -0.02 2.50 16 35 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.07 2.80 6.95 -2.39 -0.02 2.78 16 37 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 38 H -0.02 -1.42 8.14 -2.39 -0.02 -1.44 16 39 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 40 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 41 H 0.10 1.51 6.79 -2.39 -0.02 1.49 16 42 H 0.07 1.39 8.05 -2.39 -0.02 1.37 16 43 H 0.05 0.99 8.06 -2.39 -0.02 0.97 16 44 H 0.06 2.01 8.05 -2.39 -0.02 1.99 16 45 H 0.08 1.88 7.96 -2.39 -0.02 1.86 16 46 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 47 H 0.18 0.22 8.06 -2.91 -0.02 0.20 16 48 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 49 H 0.42 3.03 9.06 -74.06 -0.67 2.36 16 Total: -1.00 -82.16 409.94 0.51 -81.65 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.29 Total: 14.92 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 8.43 Total: 4.02 kcal Atomic # 7 Polarization: -127.87 SS G_CDS: -9.02 Total: -136.89 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -1.22 Total: -9.60 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -82.16 0.51 -81.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650313994.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.290 kcal (2) G-P(sol) polarization free energy of solvation -82.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds