Wall clock time and date at job start Wed Apr 1 2020 04:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46508 * 109.47111 * 2 1 4 4 C 1.36932 * 120.00009 * 264.07717 * 3 2 1 5 5 H 1.08003 * 119.99599 * 189.29632 * 4 3 2 6 6 C 1.38810 * 120.00401 * 9.29417 * 4 3 2 7 7 N 1.31622 * 119.99705 * 28.68829 * 6 4 3 8 8 Si 1.86799 * 120.00258 * 208.69492 * 6 4 3 9 9 H 1.48498 * 109.47637 * 94.98881 * 8 6 4 10 10 H 1.48500 * 109.47230 * 214.99122 * 8 6 4 11 11 H 1.48507 * 109.47015 * 334.98759 * 8 6 4 12 12 C 1.46501 * 119.99819 * 84.06749 * 3 2 1 13 13 C 1.52997 * 109.47358 * 270.00550 * 12 3 2 14 14 C 1.53004 * 109.47002 * 180.02562 * 13 12 3 15 15 N 1.46499 * 109.46978 * 180.02562 * 14 13 12 16 16 C 1.34780 * 119.99858 * 180.02562 * 15 14 13 17 17 O 1.21547 * 120.00315 * 359.97438 * 16 15 14 18 18 C 1.47869 * 119.99769 * 179.97438 * 16 15 14 19 19 C 1.39327 * 121.09082 * 318.31718 * 18 16 15 20 20 C 1.38653 * 119.36655 * 180.30321 * 19 18 16 21 21 C 1.50707 * 119.16656 * 179.72813 * 20 19 18 22 22 N 1.31477 * 121.67051 * 359.38141 * 20 19 18 23 23 C 1.32520 * 121.97309 * 0.67300 * 22 20 19 24 24 N 1.37074 * 133.45093 * 179.67369 * 23 22 20 25 25 H 0.97005 * 125.89979 * 359.96770 * 24 23 22 26 26 N 1.39978 * 108.18883 * 179.97438 * 24 23 22 27 27 C 1.30245 * 109.76227 * 359.97438 * 26 24 23 28 28 C 1.50699 * 125.70537 * 179.97438 * 27 26 24 29 29 C 1.40966 * 120.21211 * 359.62924 * 23 22 20 30 30 H 1.09006 * 109.46833 * 60.00177 * 1 2 3 31 31 H 1.08998 * 109.46423 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47382 * 300.00066 * 1 2 3 33 33 H 1.09001 * 109.47550 * 240.00392 * 2 1 3 34 34 H 1.08999 * 109.47214 * 119.99758 * 2 1 3 35 35 H 0.97002 * 119.99646 * 179.97438 * 7 6 4 36 36 H 1.08996 * 109.46821 * 150.00156 * 12 3 2 37 37 H 1.09010 * 109.46705 * 30.00480 * 12 3 2 38 38 H 1.08996 * 109.47476 * 60.00008 * 13 12 3 39 39 H 1.08996 * 109.47039 * 299.99733 * 13 12 3 40 40 H 1.08996 * 109.47170 * 59.99610 * 14 13 12 41 41 H 1.09004 * 109.46855 * 299.99301 * 14 13 12 42 42 H 0.96997 * 120.00126 * 359.97438 * 15 14 13 43 43 H 1.08006 * 120.31661 * 0.02747 * 19 18 16 44 44 H 1.09000 * 109.47170 * 89.99301 * 21 20 19 45 45 H 1.08996 * 109.46678 * 210.00032 * 21 20 19 46 46 H 1.08998 * 109.46592 * 329.99890 * 21 20 19 47 47 H 1.09000 * 109.47595 * 263.13375 * 28 27 26 48 48 H 1.08994 * 109.47570 * 23.14172 * 28 27 26 49 49 H 1.09007 * 109.46969 * 143.13506 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3620 1.9860 -1.1795 5 1 2.8607 2.9439 -1.1700 6 6 2.0693 1.3679 -2.3875 7 7 1.0339 0.5605 -2.4797 8 14 3.1450 1.6818 -3.8820 9 1 4.1693 0.6118 -3.9884 10 1 2.3036 1.6849 -5.1057 11 1 3.8174 2.9983 -3.7403 12 6 2.1389 2.1156 1.2620 13 6 0.8281 2.8493 1.5523 14 6 0.9543 3.6167 2.8700 15 7 -0.3010 4.3188 3.1483 16 6 -0.4226 5.0653 4.2638 17 8 0.5091 5.1557 5.0392 18 6 -1.6894 5.7745 4.5445 19 6 -2.3864 6.4303 3.5319 20 6 -3.5676 7.0894 3.8363 21 6 -4.3147 7.8025 2.7387 22 7 -4.0561 7.1024 5.0569 23 6 -3.4424 6.4994 6.0647 24 7 -3.7264 6.3694 7.3994 25 1 -4.4996 6.7378 7.8549 26 7 -2.7079 5.6133 7.9913 27 6 -1.8273 5.2798 7.0914 28 6 -0.5836 4.4653 7.3374 29 6 -2.2322 5.8097 5.8479 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.8292 0.1289 -3.3239 36 1 2.9509 2.8387 1.1854 37 1 2.3505 1.4159 2.0706 38 1 0.0161 2.1263 1.6289 39 1 0.6166 3.5490 0.7437 40 1 1.7662 4.3398 2.7930 41 1 1.1660 2.9173 3.6788 42 1 -1.0444 4.2470 2.5294 43 1 -2.0078 6.4291 2.5203 44 1 -5.0244 7.1162 2.2769 45 1 -4.8520 8.6530 3.1582 46 1 -3.6077 8.1541 1.9872 47 1 0.2675 5.1330 7.4714 48 1 -0.7163 3.8613 8.2350 49 1 -0.4021 3.8122 6.4837 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689960434.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:23 Heat of formation + Delta-G solvation = 83.811824 kcal Electronic energy + Delta-G solvation = -29802.347183 eV Core-core repulsion = 25766.738986 eV Total energy + Delta-G solvation = -4035.608197 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.19496 -39.75877 -38.63321 -36.63636 -35.05710 -34.03840 -32.61799 -32.13243 -31.55525 -30.37613 -28.91952 -28.15568 -27.74271 -25.83000 -24.39897 -23.29445 -22.65728 -21.19512 -21.07976 -20.29121 -19.89560 -18.61048 -17.54949 -17.32758 -16.81341 -16.17468 -15.80104 -15.61336 -15.18346 -14.87538 -14.56080 -14.23664 -14.21665 -13.89823 -13.50502 -13.44004 -13.18838 -13.08935 -12.95326 -12.72582 -12.60757 -12.46644 -12.03431 -11.89768 -11.70167 -11.47814 -11.36907 -11.21585 -10.96509 -10.81840 -10.73930 -10.52994 -10.39566 -10.31894 -9.84115 -9.72392 -9.61964 -9.32906 -9.14754 -9.04488 -8.79534 -8.38445 -6.93942 -5.81976 -3.09270 0.09021 0.79811 2.02640 2.06752 2.56217 2.95856 3.36294 3.37986 3.46963 3.47580 3.78221 4.08610 4.22009 4.31951 4.45680 4.49013 4.86510 4.92667 5.06002 5.19621 5.23670 5.28978 5.30194 5.42979 5.49086 5.52196 5.57852 5.62719 5.68811 5.75042 5.82723 5.97848 6.05217 6.10932 6.22408 6.36690 6.45499 6.55490 6.71021 6.75858 6.82781 6.89512 7.05953 7.06832 7.13401 7.37122 7.55485 7.61787 7.72483 8.00376 8.07964 8.32148 9.21025 9.84875 10.30397 11.22517 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.015404 B = 0.002228 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.306958 B =12565.168672 C =13466.678033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.168 3.832 3 N -0.596 5.596 4 C -0.252 4.252 5 H 0.074 0.926 6 C 0.000 4.000 7 N -0.891 5.891 8 Si 0.890 3.110 9 H -0.290 1.290 10 H -0.295 1.295 11 H -0.281 1.281 12 C 0.157 3.843 13 C -0.156 4.156 14 C 0.118 3.882 15 N -0.712 5.712 16 C 0.551 3.449 17 O -0.520 6.520 18 C 0.006 3.994 19 C -0.184 4.184 20 C 0.201 3.799 21 C -0.107 4.107 22 N -0.497 5.497 23 C 0.321 3.679 24 N -0.492 5.492 25 H 0.446 0.554 26 N -0.242 5.242 27 C 0.127 3.873 28 C -0.073 4.073 29 C -0.190 4.190 30 H 0.095 0.905 31 H 0.017 0.983 32 H 0.014 0.986 33 H 0.078 0.922 34 H 0.005 0.995 35 H 0.251 0.749 36 H 0.047 0.953 37 H 0.040 0.960 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.403 0.597 43 H 0.151 0.849 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.093 0.907 48 H 0.072 0.928 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.059 10.908 14.803 20.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.043 3.957 3 N -0.317 5.317 4 C -0.381 4.381 5 H 0.091 0.909 6 C -0.198 4.198 7 N -0.536 5.536 8 Si 0.720 3.280 9 H -0.217 1.217 10 H -0.221 1.221 11 H -0.206 1.206 12 C 0.028 3.972 13 C -0.197 4.197 14 C -0.005 4.005 15 N -0.363 5.363 16 C 0.336 3.664 17 O -0.397 6.397 18 C -0.008 4.008 19 C -0.206 4.206 20 C 0.052 3.948 21 C -0.165 4.165 22 N -0.214 5.214 23 C 0.079 3.921 24 N -0.209 5.209 25 H 0.292 0.708 26 N -0.059 5.059 27 C -0.049 4.049 28 C -0.131 4.131 29 C -0.201 4.201 30 H 0.113 0.887 31 H 0.036 0.964 32 H 0.033 0.967 33 H 0.096 0.904 34 H 0.023 0.977 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.238 0.762 43 H 0.169 0.831 44 H 0.106 0.894 45 H 0.100 0.900 46 H 0.103 0.897 47 H 0.112 0.888 48 H 0.091 0.909 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.501 11.180 16.704 22.678 hybrid contribution 0.323 0.064 -1.878 1.906 sum -10.178 11.244 14.826 21.209 Atomic orbital electron populations 1.22457 0.99267 0.98260 1.01424 1.20689 0.92557 0.84544 0.97918 1.44273 1.75668 1.10030 1.01718 1.19253 1.30977 1.04396 0.83477 0.90857 1.24684 0.97436 1.00468 0.97175 1.70167 1.23891 1.34648 1.24912 0.86446 0.80975 0.77811 0.82751 1.21682 1.22145 1.20623 1.20665 0.93592 0.94155 0.88756 1.22746 1.03035 0.99762 0.94142 1.21619 0.84664 0.95469 0.98729 1.46151 1.17951 1.48980 1.23184 1.18064 0.86807 0.79631 0.81892 1.90807 1.39801 1.62234 1.46856 1.19900 0.93710 0.95497 0.91717 1.22000 0.96672 1.01836 1.00088 1.21165 0.91192 0.91979 0.90469 1.20847 1.00461 1.00550 0.94625 1.66297 1.34515 1.21806 0.98770 1.18961 0.91353 0.94614 0.87200 1.45911 1.23436 1.48282 1.03288 0.70774 1.76868 0.97966 1.10389 1.20659 1.22421 0.96550 0.96978 0.88995 1.20434 0.91001 0.98558 1.03116 1.19149 0.98868 1.07629 0.94478 0.88679 0.96354 0.96696 0.90354 0.97700 0.93831 0.93466 0.94181 0.91514 0.91302 0.91353 0.91543 0.76201 0.83136 0.89411 0.90000 0.89674 0.88834 0.90889 0.89642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 9.60 37.16 0.36 -3.01 16 2 C 0.17 3.86 5.64 -4.04 -0.02 3.83 16 3 N -0.60 -13.77 2.54 -173.23 -0.44 -14.21 16 4 C -0.25 -6.46 9.66 -15.06 -0.15 -6.61 16 5 H 0.07 1.86 7.96 -52.48 -0.42 1.44 16 6 C 0.00 0.00 4.77 -17.43 -0.08 -0.08 16 7 N -0.89 -23.93 8.77 55.49 0.49 -23.44 16 8 Si 0.89 20.83 29.64 -169.99 -5.04 15.79 16 9 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.16 2.89 5.71 -4.04 -0.02 2.87 16 13 C -0.16 -2.45 5.53 -26.73 -0.15 -2.60 16 14 C 0.12 1.55 5.67 -4.04 -0.02 1.53 16 15 N -0.71 -8.29 5.50 -61.24 -0.34 -8.63 16 16 C 0.55 7.01 6.69 -12.32 -0.08 6.93 16 17 O -0.52 -7.79 13.60 5.32 0.07 -7.72 16 18 C 0.01 0.07 5.79 -104.41 -0.60 -0.54 16 19 C -0.18 -1.74 9.10 -39.02 -0.35 -2.10 16 20 C 0.20 1.90 6.77 -82.59 -0.56 1.34 16 21 C -0.11 -0.64 10.14 36.01 0.37 -0.27 16 22 N -0.50 -5.65 10.25 -8.59 -0.09 -5.74 16 23 C 0.32 3.92 8.48 -156.07 -1.32 2.59 16 24 N -0.49 -5.33 7.43 31.14 0.23 -5.10 16 25 H 0.45 3.44 8.96 -182.69 -1.64 1.80 16 26 N -0.24 -2.97 12.57 33.83 0.43 -2.54 16 27 C 0.13 1.59 7.22 -82.18 -0.59 1.00 16 28 C -0.07 -0.79 8.61 36.00 0.31 -0.48 16 29 C -0.19 -2.44 5.99 -106.64 -0.64 -3.08 16 30 H 0.09 2.37 6.13 -51.93 -0.32 2.05 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.01 0.28 5.97 -51.93 -0.31 -0.03 16 33 H 0.08 2.02 6.06 -51.93 -0.31 1.70 16 34 H 0.00 0.10 7.98 -51.93 -0.41 -0.31 16 35 H 0.25 6.64 8.31 -40.82 -0.34 6.30 16 36 H 0.05 0.86 8.03 -51.93 -0.42 0.44 16 37 H 0.04 0.69 7.95 -51.92 -0.41 0.27 16 38 H 0.07 1.10 5.92 -51.93 -0.31 0.79 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.40 4.01 8.11 -40.82 -0.33 3.68 16 43 H 0.15 1.06 8.02 -52.48 -0.42 0.64 16 44 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.37 8.07 -51.93 -0.42 -0.05 16 47 H 0.09 1.05 7.76 -51.93 -0.40 0.64 16 48 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 49 H 0.08 1.00 6.31 -51.92 -0.33 0.67 16 LS Contribution 395.54 15.07 5.96 5.96 Total: -1.00 -30.63 395.54 -10.84 -41.47 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -8.55 Total: 2.83 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -3.57 Total: 1.32 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: 0.28 Total: -59.65 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: 0.07 Total: -7.72 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.04 Total: 15.79 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.63 -10.84 -41.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689960434.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.285 kcal (2) G-P(sol) polarization free energy of solvation -30.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds