Wall clock time and date at job start Wed Apr 1 2020 04:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46508 * 109.47111 * 2 1 4 4 C 1.36932 * 120.00009 * 264.07717 * 3 2 1 5 5 H 1.08003 * 119.99599 * 189.29632 * 4 3 2 6 6 C 1.38810 * 120.00401 * 9.29417 * 4 3 2 7 7 N 1.31622 * 119.99705 * 28.68829 * 6 4 3 8 8 Si 1.86799 * 120.00258 * 208.69492 * 6 4 3 9 9 H 1.48498 * 109.47637 * 94.98881 * 8 6 4 10 10 H 1.48500 * 109.47230 * 214.99122 * 8 6 4 11 11 H 1.48507 * 109.47015 * 334.98759 * 8 6 4 12 12 C 1.46501 * 119.99819 * 84.06749 * 3 2 1 13 13 C 1.52997 * 109.47358 * 270.00550 * 12 3 2 14 14 C 1.53004 * 109.47002 * 180.02562 * 13 12 3 15 15 N 1.46499 * 109.46978 * 180.02562 * 14 13 12 16 16 C 1.34780 * 119.99858 * 180.02562 * 15 14 13 17 17 O 1.21547 * 120.00315 * 359.97438 * 16 15 14 18 18 C 1.47869 * 119.99769 * 179.97438 * 16 15 14 19 19 C 1.39327 * 121.09082 * 318.31718 * 18 16 15 20 20 C 1.38653 * 119.36655 * 180.30321 * 19 18 16 21 21 C 1.50707 * 119.16656 * 179.72813 * 20 19 18 22 22 N 1.31477 * 121.67051 * 359.38141 * 20 19 18 23 23 C 1.32520 * 121.97309 * 0.67300 * 22 20 19 24 24 N 1.37074 * 133.45093 * 179.67369 * 23 22 20 25 25 H 0.97005 * 125.89979 * 359.96770 * 24 23 22 26 26 N 1.39978 * 108.18883 * 179.97438 * 24 23 22 27 27 C 1.30245 * 109.76227 * 359.97438 * 26 24 23 28 28 C 1.50699 * 125.70537 * 179.97438 * 27 26 24 29 29 C 1.40966 * 120.21211 * 359.62924 * 23 22 20 30 30 H 1.09006 * 109.46833 * 60.00177 * 1 2 3 31 31 H 1.08998 * 109.46423 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47382 * 300.00066 * 1 2 3 33 33 H 1.09001 * 109.47550 * 240.00392 * 2 1 3 34 34 H 1.08999 * 109.47214 * 119.99758 * 2 1 3 35 35 H 0.97002 * 119.99646 * 179.97438 * 7 6 4 36 36 H 1.08996 * 109.46821 * 150.00156 * 12 3 2 37 37 H 1.09010 * 109.46705 * 30.00480 * 12 3 2 38 38 H 1.08996 * 109.47476 * 60.00008 * 13 12 3 39 39 H 1.08996 * 109.47039 * 299.99733 * 13 12 3 40 40 H 1.08996 * 109.47170 * 59.99610 * 14 13 12 41 41 H 1.09004 * 109.46855 * 299.99301 * 14 13 12 42 42 H 0.96997 * 120.00126 * 359.97438 * 15 14 13 43 43 H 1.08006 * 120.31661 * 0.02747 * 19 18 16 44 44 H 1.09000 * 109.47170 * 89.99301 * 21 20 19 45 45 H 1.08996 * 109.46678 * 210.00032 * 21 20 19 46 46 H 1.08998 * 109.46592 * 329.99890 * 21 20 19 47 47 H 1.09000 * 109.47595 * 263.13375 * 28 27 26 48 48 H 1.08994 * 109.47570 * 23.14172 * 28 27 26 49 49 H 1.09007 * 109.46969 * 143.13506 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3620 1.9860 -1.1795 5 1 2.8607 2.9439 -1.1700 6 6 2.0693 1.3679 -2.3875 7 7 1.0339 0.5605 -2.4797 8 14 3.1450 1.6818 -3.8820 9 1 4.1693 0.6118 -3.9884 10 1 2.3036 1.6849 -5.1057 11 1 3.8174 2.9983 -3.7403 12 6 2.1389 2.1156 1.2620 13 6 0.8281 2.8493 1.5523 14 6 0.9543 3.6167 2.8700 15 7 -0.3010 4.3188 3.1483 16 6 -0.4226 5.0653 4.2638 17 8 0.5091 5.1557 5.0392 18 6 -1.6894 5.7745 4.5445 19 6 -2.3864 6.4303 3.5319 20 6 -3.5676 7.0894 3.8363 21 6 -4.3147 7.8025 2.7387 22 7 -4.0561 7.1024 5.0569 23 6 -3.4424 6.4994 6.0647 24 7 -3.7264 6.3694 7.3994 25 1 -4.4996 6.7378 7.8549 26 7 -2.7079 5.6133 7.9913 27 6 -1.8273 5.2798 7.0914 28 6 -0.5836 4.4653 7.3374 29 6 -2.2322 5.8097 5.8479 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.8292 0.1289 -3.3239 36 1 2.9509 2.8387 1.1854 37 1 2.3505 1.4159 2.0706 38 1 0.0161 2.1263 1.6289 39 1 0.6166 3.5490 0.7437 40 1 1.7662 4.3398 2.7930 41 1 1.1660 2.9173 3.6788 42 1 -1.0444 4.2470 2.5294 43 1 -2.0078 6.4291 2.5203 44 1 -5.0244 7.1162 2.2769 45 1 -4.8520 8.6530 3.1582 46 1 -3.6077 8.1541 1.9872 47 1 0.2675 5.1330 7.4714 48 1 -0.7163 3.8613 8.2350 49 1 -0.4021 3.8122 6.4837 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689960434.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:22 Heat of formation + Delta-G solvation = 65.482870 kcal Electronic energy + Delta-G solvation = -29803.141986 eV Core-core repulsion = 25766.738986 eV Total energy + Delta-G solvation = -4036.403000 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.03958 -40.75156 -39.45221 -38.24617 -36.30699 -34.91498 -33.83981 -33.17920 -32.57714 -31.92057 -30.56325 -28.98840 -28.48966 -27.17514 -25.70377 -24.66819 -23.54286 -22.58681 -22.14745 -21.74146 -20.89984 -19.51862 -18.64292 -18.37147 -18.21095 -17.20460 -16.95351 -16.59422 -16.50158 -16.23384 -15.63324 -15.42900 -15.23657 -14.90716 -14.83326 -14.67855 -14.30570 -14.22738 -13.83704 -13.69182 -13.64908 -13.45155 -13.29317 -13.04874 -13.00975 -12.85621 -12.72999 -12.56266 -12.52700 -12.12425 -12.09887 -12.04851 -11.72311 -11.62074 -11.43651 -11.29519 -11.08698 -10.61213 -10.30241 -10.11573 -9.94833 -9.62012 -8.79219 -7.77693 -5.04687 -0.75936 -0.00945 1.14408 1.24981 1.50554 1.56268 1.61319 1.62031 1.98975 2.52862 2.59526 3.01574 3.23957 3.31959 3.42764 3.49787 3.65208 3.69947 4.08145 4.17548 4.19720 4.29379 4.35031 4.54577 4.63830 4.69590 4.73076 4.74210 4.80757 4.81548 4.83749 4.87307 4.90862 4.98220 5.06101 5.08381 5.23721 5.26209 5.30194 5.40363 5.41188 5.45567 5.60643 5.70746 5.83050 6.02678 6.19362 6.23567 6.40479 6.42779 6.75726 7.04601 7.27738 8.00282 8.40765 9.24736 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.015404 B = 0.002228 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.306958 B =12565.168672 C =13466.678033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.169 3.831 3 N -0.611 5.611 4 C -0.254 4.254 5 H 0.072 0.928 6 C -0.046 4.046 7 N -0.910 5.910 8 Si 0.943 3.057 9 H -0.296 1.296 10 H -0.301 1.301 11 H -0.274 1.274 12 C 0.150 3.850 13 C -0.135 4.135 14 C 0.132 3.868 15 N -0.703 5.703 16 C 0.556 3.444 17 O -0.546 6.546 18 C -0.008 4.008 19 C -0.172 4.172 20 C 0.201 3.799 21 C -0.106 4.106 22 N -0.508 5.508 23 C 0.307 3.693 24 N -0.484 5.484 25 H 0.457 0.543 26 N -0.254 5.254 27 C 0.113 3.887 28 C -0.065 4.065 29 C -0.214 4.214 30 H 0.063 0.937 31 H 0.028 0.972 32 H 0.033 0.967 33 H 0.045 0.955 34 H 0.025 0.975 35 H 0.245 0.755 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.413 0.587 43 H 0.178 0.822 44 H 0.101 0.899 45 H 0.084 0.916 46 H 0.106 0.894 47 H 0.088 0.912 48 H 0.087 0.913 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.601 11.874 14.906 21.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.043 3.957 3 N -0.333 5.333 4 C -0.384 4.384 5 H 0.090 0.910 6 C -0.242 4.242 7 N -0.557 5.557 8 Si 0.773 3.227 9 H -0.224 1.224 10 H -0.228 1.228 11 H -0.199 1.199 12 C 0.024 3.976 13 C -0.175 4.175 14 C 0.008 3.992 15 N -0.355 5.355 16 C 0.342 3.658 17 O -0.424 6.424 18 C -0.022 4.022 19 C -0.194 4.194 20 C 0.051 3.949 21 C -0.163 4.163 22 N -0.225 5.225 23 C 0.065 3.935 24 N -0.204 5.204 25 H 0.305 0.695 26 N -0.071 5.071 27 C -0.063 4.063 28 C -0.124 4.124 29 C -0.225 4.225 30 H 0.082 0.918 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.044 0.956 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.250 0.750 43 H 0.196 0.804 44 H 0.120 0.880 45 H 0.103 0.897 46 H 0.125 0.875 47 H 0.106 0.894 48 H 0.106 0.894 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.056 12.166 16.834 23.529 hybrid contribution 0.468 -0.186 -1.894 1.960 sum -10.589 11.980 14.939 21.882 Atomic orbital electron populations 1.22235 0.98392 0.98694 1.00672 1.20599 0.93252 0.84603 0.97218 1.44422 1.75960 1.10427 1.02461 1.19457 1.30186 1.04192 0.84547 0.91011 1.25238 0.98427 1.01302 0.99222 1.70305 1.24795 1.35765 1.24824 0.85608 0.79307 0.77574 0.80180 1.22365 1.22849 1.19889 1.20839 0.94937 0.94544 0.87309 1.22369 1.01055 0.99167 0.94959 1.21347 0.85256 0.95341 0.97263 1.45972 1.17772 1.48507 1.23206 1.18153 0.86834 0.79327 0.81521 1.90796 1.40770 1.63164 1.47684 1.19878 0.93714 0.96564 0.92074 1.22350 0.96101 1.00227 1.00719 1.21838 0.91207 0.91252 0.90596 1.20991 1.00933 1.00521 0.93816 1.66414 1.34796 1.22031 0.99277 1.19158 0.91547 0.95039 0.87743 1.45922 1.23487 1.47853 1.03119 0.69476 1.76800 0.98391 1.10921 1.21017 1.22644 0.97006 0.97399 0.89225 1.20369 0.90332 0.98281 1.03393 1.19361 0.99570 1.08554 0.95026 0.91834 0.95331 0.94836 0.93688 0.95641 0.94573 0.93239 0.92505 0.92006 0.92719 0.91443 0.91123 0.75039 0.80448 0.88029 0.89747 0.87544 0.89383 0.89401 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.97 9.60 71.98 0.69 -5.28 16 2 C 0.17 7.60 5.64 86.38 0.49 8.09 16 3 N -0.61 -27.65 2.54 -701.98 -1.78 -29.43 16 4 C -0.25 -12.89 9.66 84.03 0.81 -12.08 16 5 H 0.07 3.59 7.96 -2.91 -0.02 3.57 16 6 C -0.05 -2.43 4.77 84.86 0.40 -2.02 16 7 N -0.91 -49.38 8.77 21.65 0.19 -49.19 16 8 Si 0.94 43.03 29.64 68.60 2.03 45.06 16 9 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 10 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 12 C 0.15 5.28 5.71 86.38 0.49 5.77 16 13 C -0.14 -3.99 5.53 30.59 0.17 -3.82 16 14 C 0.13 3.18 5.67 86.38 0.49 3.67 16 15 N -0.70 -14.99 5.50 -465.94 -2.56 -17.56 16 16 C 0.56 13.41 6.69 86.79 0.58 13.99 16 17 O -0.55 -15.94 13.60 -3.86 -0.05 -15.99 16 18 C -0.01 -0.19 5.79 -19.73 -0.11 -0.30 16 19 C -0.17 -2.86 9.10 22.63 0.21 -2.65 16 20 C 0.20 3.33 6.77 42.71 0.29 3.62 16 21 C -0.11 -0.92 10.14 71.24 0.72 -0.20 16 22 N -0.51 -10.84 10.25 -181.10 -1.86 -12.70 16 23 C 0.31 7.29 8.48 134.13 1.14 8.43 16 24 N -0.48 -10.33 7.43 -55.39 -0.41 -10.74 16 25 H 0.46 6.86 8.96 -213.39 -1.91 4.95 16 26 N -0.25 -6.18 12.57 -46.89 -0.59 -6.77 16 27 C 0.11 2.82 7.22 43.50 0.31 3.13 16 28 C -0.07 -1.42 8.61 71.24 0.61 -0.81 16 29 C -0.21 -5.39 5.99 -21.17 -0.13 -5.51 16 30 H 0.06 3.14 6.13 -2.38 -0.01 3.13 16 31 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.03 1.26 5.97 -2.39 -0.01 1.24 16 33 H 0.04 2.33 6.06 -2.39 -0.01 2.31 16 34 H 0.03 1.03 7.98 -2.39 -0.02 1.01 16 35 H 0.24 13.13 8.31 -92.71 -0.77 12.36 16 36 H 0.05 1.71 8.03 -2.39 -0.02 1.69 16 37 H 0.06 1.81 7.95 -2.38 -0.02 1.79 16 38 H 0.06 1.90 5.92 -2.39 -0.01 1.89 16 39 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 42 H 0.41 7.24 8.11 -92.71 -0.75 6.49 16 43 H 0.18 1.88 8.02 -2.91 -0.02 1.86 16 44 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.11 0.50 8.07 -2.39 -0.02 0.48 16 47 H 0.09 1.99 7.76 -2.39 -0.02 1.97 16 48 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 49 H 0.08 1.79 6.31 -2.38 -0.02 1.78 16 Total: -1.00 -65.69 395.54 0.47 -65.21 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -1.66 Total: 18.07 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 7.17 Total: 14.04 kcal Atomic # 7 Polarization: -119.37 SS G_CDS: -7.01 Total: -126.39 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.05 Total: -15.99 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -65.69 0.47 -65.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689960434.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.695 kcal (2) G-P(sol) polarization free energy of solvation -65.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds