Wall clock time and date at job start Wed Apr 1 2020 03:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47335 * 2 1 4 4 N 1.46501 * 109.47222 * 119.99971 * 2 1 3 5 5 C 1.36942 * 119.99993 * 301.90206 * 4 2 1 6 6 H 1.08003 * 119.99864 * 324.85787 * 5 4 2 7 7 C 1.38811 * 120.00040 * 144.85443 * 5 4 2 8 8 N 1.31623 * 119.99603 * 157.16825 * 7 5 4 9 9 Si 1.86798 * 120.00024 * 337.16974 * 7 5 4 10 10 H 1.48500 * 109.47213 * 95.35525 * 9 7 5 11 11 H 1.48504 * 109.46705 * 215.35052 * 9 7 5 12 12 H 1.48496 * 109.47028 * 335.34905 * 9 7 5 13 13 C 1.46504 * 120.00315 * 121.89781 * 4 2 1 14 14 C 1.53000 * 109.46719 * 90.00064 * 13 4 2 15 15 C 1.52999 * 109.46764 * 179.97438 * 14 13 4 16 16 N 1.46503 * 109.47342 * 179.97438 * 15 14 13 17 17 C 1.34770 * 120.00222 * 180.27606 * 16 15 14 18 18 O 1.21574 * 120.00045 * 359.72828 * 17 16 15 19 19 C 1.47690 * 119.99876 * 179.72864 * 17 16 15 20 20 C 1.40176 * 120.41107 * 359.97438 * 19 17 16 21 21 N 1.31193 * 121.37723 * 179.97438 * 20 19 17 22 22 C 1.32925 * 121.84450 * 359.97438 * 21 20 19 23 23 C 1.41070 * 120.20319 * 0.02562 * 22 21 20 24 24 C 1.45969 * 106.43840 * 179.97438 * 23 22 21 25 25 N 1.30203 * 107.58198 * 359.97438 * 24 23 22 26 26 N 1.36629 * 133.27320 * 180.02562 * 22 21 20 27 27 C 1.46497 * 125.33766 * 359.96968 * 26 22 21 28 28 C 1.39508 * 120.40802 * 179.72323 * 19 17 16 29 29 H 1.09003 * 109.47038 * 305.32915 * 1 2 3 30 30 H 1.09001 * 109.46843 * 65.32994 * 1 2 3 31 31 H 1.09002 * 109.47200 * 185.32781 * 1 2 3 32 32 H 1.08999 * 109.47297 * 239.99727 * 2 1 3 33 33 H 1.09002 * 109.47490 * 175.18401 * 3 2 1 34 34 H 1.08998 * 109.47155 * 295.18813 * 3 2 1 35 35 H 1.09002 * 109.47152 * 55.18505 * 3 2 1 36 36 H 0.96999 * 119.99965 * 180.02562 * 8 7 5 37 37 H 1.08998 * 109.46492 * 330.00471 * 13 4 2 38 38 H 1.09000 * 109.46961 * 209.99945 * 13 4 2 39 39 H 1.09002 * 109.46861 * 60.00735 * 14 13 4 40 40 H 1.08990 * 109.47354 * 300.00235 * 14 13 4 41 41 H 1.09007 * 109.46999 * 60.00291 * 15 14 13 42 42 H 1.09003 * 109.47625 * 300.00216 * 15 14 13 43 43 H 0.97004 * 119.99730 * 0.02562 * 16 15 14 44 44 H 1.08005 * 119.31191 * 0.02562 * 20 19 17 45 45 H 1.07993 * 126.20818 * 180.02562 * 24 23 22 46 46 H 1.09003 * 109.46890 * 90.00148 * 27 26 22 47 47 H 1.09001 * 109.47389 * 210.00021 * 27 26 22 48 48 H 1.09003 * 109.47558 * 329.99940 * 27 26 22 49 49 H 1.08000 * 121.02747 * 0.02562 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6557 -0.2459 2.4396 6 1 1.5323 0.8118 2.6200 7 6 1.4467 -1.1545 3.4680 8 7 1.5441 -0.7638 4.7211 9 14 1.0272 -2.9315 3.0734 10 1 2.2672 -3.7484 3.0906 11 1 0.0769 -3.4528 4.0886 12 1 0.4039 -3.0058 1.7277 13 6 2.8946 -1.8570 1.0622 14 6 4.3542 -1.3988 1.0432 15 6 5.2694 -2.6169 0.9039 16 7 6.6670 -2.1782 0.8851 17 6 7.6565 -3.0852 0.7635 18 8 7.3894 -4.2679 0.6744 19 6 9.0652 -2.6423 0.7384 20 6 9.3828 -1.2808 0.8400 21 7 10.6275 -0.8664 0.8203 22 6 11.6464 -1.7121 0.7042 23 6 11.4093 -3.0986 0.5969 24 6 12.7186 -3.7342 0.4853 25 7 13.6174 -2.7929 0.5250 26 7 13.0017 -1.5450 0.6592 27 6 13.7000 -0.2596 0.7371 28 6 10.0964 -3.5742 0.6186 29 1 -0.3633 0.5943 0.8384 30 1 -0.3633 0.4290 -0.9339 31 1 -0.3634 -1.0232 0.0954 32 1 1.8933 -0.5139 -0.8899 33 1 3.1266 1.4437 0.0863 34 1 1.7488 1.9308 -0.9299 35 1 1.6080 1.9806 0.8437 36 1 1.3984 -1.3988 5.4398 37 1 2.6654 -2.3787 0.1331 38 1 2.7358 -2.5294 1.9053 39 1 4.5834 -0.8770 1.9724 40 1 4.5130 -0.7263 0.2003 41 1 5.0403 -3.1392 -0.0251 42 1 5.1105 -3.2891 1.7472 43 1 6.8801 -1.2346 0.9565 44 1 8.5864 -0.5578 0.9373 45 1 12.9075 -4.7929 0.3867 46 1 13.9178 -0.0270 1.7796 47 1 14.6324 -0.3179 0.1755 48 1 13.0696 0.5227 0.3144 49 1 9.8857 -4.6307 0.5420 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713694639.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:26 Heat of formation + Delta-G solvation = 90.505132 kcal Electronic energy + Delta-G solvation = -29306.750306 eV Core-core repulsion = 25271.432353 eV Total energy + Delta-G solvation = -4035.317953 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.00391 -39.88775 -38.08313 -37.11825 -35.22227 -34.24141 -32.67968 -32.15580 -31.80999 -30.70198 -29.19990 -27.34238 -26.33370 -25.56604 -24.31915 -23.99301 -23.03936 -21.35575 -21.33871 -20.71543 -19.43546 -18.15776 -18.07721 -17.05891 -16.44441 -16.29721 -15.92798 -15.69921 -15.30273 -15.08562 -14.78283 -14.54173 -14.10634 -14.06437 -13.65338 -13.60856 -13.44432 -13.32759 -13.05715 -12.94086 -12.68482 -12.35393 -12.19827 -11.90871 -11.82631 -11.56536 -11.40851 -11.19513 -10.88422 -10.81583 -10.73317 -10.49396 -10.44428 -10.27646 -9.94239 -9.76078 -9.66233 -9.50059 -9.38507 -9.05634 -8.68233 -8.48448 -6.86743 -5.98509 -3.37338 0.34142 0.46547 1.67722 1.98453 2.70163 3.09077 3.31864 3.48932 3.52445 3.53506 3.65878 3.82943 4.14239 4.41289 4.46123 4.52748 4.68278 4.81213 4.83096 4.87812 4.96983 5.07044 5.14541 5.32034 5.46961 5.50792 5.66158 5.74704 5.77709 5.81423 5.97848 6.00468 6.03614 6.16072 6.19673 6.29493 6.30284 6.31632 6.50882 6.54466 6.62807 6.69388 6.74203 6.89159 6.94130 7.07860 7.13998 7.40527 7.48646 8.05509 8.15844 8.39318 9.00173 9.73495 10.12687 11.17229 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.016617 B = 0.002084 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.592619 B =13430.027521 C =13978.381038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.166 3.834 3 C -0.153 4.153 4 N -0.601 5.601 5 C -0.259 4.259 6 H 0.081 0.919 7 C 0.034 3.966 8 N -0.901 5.901 9 Si 0.874 3.126 10 H -0.285 1.285 11 H -0.304 1.304 12 H -0.270 1.270 13 C 0.142 3.858 14 C -0.147 4.147 15 C 0.118 3.882 16 N -0.719 5.719 17 C 0.566 3.434 18 O -0.541 6.541 19 C -0.230 4.230 20 C 0.206 3.794 21 N -0.504 5.504 22 C 0.329 3.671 23 C -0.239 4.239 24 C 0.097 3.903 25 N -0.241 5.241 26 N -0.393 5.393 27 C 0.110 3.890 28 C 0.073 3.927 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.037 0.963 35 H 0.056 0.944 36 H 0.262 0.738 37 H 0.041 0.959 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.399 0.601 44 H 0.171 0.829 45 H 0.206 0.794 46 H 0.073 0.927 47 H 0.089 0.911 48 H 0.092 0.908 49 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.871 -1.252 -10.913 23.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.060 3.940 3 C -0.212 4.212 4 N -0.323 5.323 5 C -0.387 4.387 6 H 0.098 0.902 7 C -0.167 4.167 8 N -0.543 5.543 9 Si 0.705 3.295 10 H -0.214 1.214 11 H -0.233 1.233 12 H -0.195 1.195 13 C 0.015 3.985 14 C -0.187 4.187 15 C -0.005 4.005 16 N -0.370 5.370 17 C 0.353 3.647 18 O -0.419 6.419 19 C -0.238 4.238 20 C 0.036 3.964 21 N -0.218 5.218 22 C 0.089 3.911 23 C -0.249 4.249 24 C -0.102 4.102 25 N -0.053 5.053 26 N -0.183 5.183 27 C -0.031 4.031 28 C 0.044 3.956 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.234 0.766 44 H 0.188 0.812 45 H 0.223 0.777 46 H 0.091 0.909 47 H 0.107 0.893 48 H 0.110 0.890 49 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 22.255 -0.793 -10.757 24.731 hybrid contribution -1.107 -1.469 0.071 1.841 sum 21.147 -2.262 -10.686 23.801 Atomic orbital electron populations 1.22121 0.97670 1.01368 0.99944 1.20394 0.92498 0.92233 0.88896 1.22158 1.00673 0.98341 1.00012 1.44243 1.52372 1.33120 1.02583 1.18675 1.42510 0.93134 0.84387 0.90180 1.25406 0.98523 0.97657 0.95066 1.69869 1.50447 1.35412 0.98557 0.86999 0.77830 0.86791 0.77865 1.21364 1.23262 1.19468 1.21074 0.87971 0.90307 0.99126 1.22440 0.97118 0.96250 1.02910 1.21537 0.78509 0.98401 1.02100 1.46012 1.06947 1.10052 1.73959 1.17815 0.84279 0.85919 0.76729 1.90785 1.84168 1.16612 1.50333 1.20714 0.94713 0.95038 1.13303 1.22915 0.91869 0.93307 0.88339 1.66683 0.98257 1.37561 1.19320 1.19142 0.86553 0.90380 0.94993 1.20474 0.95023 0.94034 1.15413 1.25156 0.87769 0.99648 0.97624 1.76749 1.21825 0.88545 1.18159 1.48143 1.00871 1.06201 1.63058 1.21871 0.98074 0.79739 1.03419 1.21184 0.88415 1.00836 0.85174 0.92092 0.94511 0.93482 0.93267 0.93441 0.94414 0.92487 0.92804 0.94094 0.92767 0.90418 0.92076 0.91622 0.91329 0.76583 0.81243 0.77728 0.90851 0.89270 0.88959 0.82687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.04 37.16 0.34 -2.43 16 2 C 0.17 3.08 3.36 -67.93 -0.23 2.85 16 3 C -0.15 -2.58 9.11 37.16 0.34 -2.24 16 4 N -0.60 -13.10 2.06 -165.66 -0.34 -13.44 16 5 C -0.26 -6.72 8.74 -15.06 -0.13 -6.86 16 6 H 0.08 2.27 7.17 -52.48 -0.38 1.89 16 7 C 0.03 0.93 5.31 -17.43 -0.09 0.83 16 8 N -0.90 -26.72 13.97 55.49 0.78 -25.94 16 9 Si 0.87 21.73 24.97 -169.99 -4.24 17.49 16 10 H -0.29 -6.91 6.66 56.52 0.38 -6.54 16 11 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.14 2.82 4.49 -4.04 -0.02 2.80 16 14 C -0.15 -2.40 5.65 -26.73 -0.15 -2.56 16 15 C 0.12 1.76 5.67 -4.04 -0.02 1.74 16 16 N -0.72 -9.01 5.51 -61.30 -0.34 -9.34 16 17 C 0.57 7.65 7.77 -12.40 -0.10 7.55 16 18 O -0.54 -9.14 16.40 5.30 0.09 -9.05 16 19 C -0.23 -2.56 5.89 -104.84 -0.62 -3.18 16 20 C 0.21 2.06 10.69 -17.10 -0.18 1.88 16 21 N -0.50 -5.65 10.37 -12.03 -0.12 -5.78 16 22 C 0.33 3.69 7.96 -156.10 -1.24 2.45 16 23 C -0.24 -2.43 6.36 -105.20 -0.67 -3.10 16 24 C 0.10 0.78 12.30 -15.15 -0.19 0.60 16 25 N -0.24 -2.36 12.39 31.87 0.39 -1.96 16 26 N -0.39 -3.93 4.03 -67.17 -0.27 -4.21 16 27 C 0.11 0.71 11.43 59.85 0.68 1.39 16 28 C 0.07 0.74 9.76 -38.58 -0.38 0.37 16 29 H 0.06 1.20 7.80 -51.93 -0.40 0.80 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.83 7.78 -51.93 -0.40 0.42 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 1.06 7.25 -51.93 -0.38 0.69 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.04 0.74 7.90 -51.93 -0.41 0.33 16 38 H 0.05 1.22 2.97 -51.93 -0.15 1.06 16 39 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.40 3.92 6.51 -40.82 -0.27 3.65 16 44 H 0.17 1.23 6.39 -52.48 -0.34 0.89 16 45 H 0.21 0.79 8.06 -52.49 -0.42 0.36 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.16 1.40 7.72 -52.49 -0.41 0.99 16 LS Contribution 401.53 15.07 6.05 6.05 Total: -1.00 -34.03 401.53 -8.03 -42.06 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.37 Total: 2.02 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -2.66 Total: 2.10 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: 0.09 Total: -60.67 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.24 Total: 17.49 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.03 -8.03 -42.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713694639.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.565 kcal (2) G-P(sol) polarization free energy of solvation -34.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds