Wall clock time and date at job start Wed Apr 1 2020 03:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47335 * 2 1 4 4 N 1.46501 * 109.47222 * 119.99971 * 2 1 3 5 5 C 1.36942 * 119.99993 * 301.90206 * 4 2 1 6 6 H 1.08003 * 119.99864 * 324.85787 * 5 4 2 7 7 C 1.38811 * 120.00040 * 144.85443 * 5 4 2 8 8 N 1.31623 * 119.99603 * 157.16825 * 7 5 4 9 9 Si 1.86798 * 120.00024 * 337.16974 * 7 5 4 10 10 H 1.48500 * 109.47213 * 95.35525 * 9 7 5 11 11 H 1.48504 * 109.46705 * 215.35052 * 9 7 5 12 12 H 1.48496 * 109.47028 * 335.34905 * 9 7 5 13 13 C 1.46504 * 120.00315 * 121.89781 * 4 2 1 14 14 C 1.53000 * 109.46719 * 90.00064 * 13 4 2 15 15 C 1.52999 * 109.46764 * 179.97438 * 14 13 4 16 16 N 1.46503 * 109.47342 * 179.97438 * 15 14 13 17 17 C 1.34770 * 120.00222 * 180.27606 * 16 15 14 18 18 O 1.21574 * 120.00045 * 359.72828 * 17 16 15 19 19 C 1.47690 * 119.99876 * 179.72864 * 17 16 15 20 20 C 1.40176 * 120.41107 * 359.97438 * 19 17 16 21 21 N 1.31193 * 121.37723 * 179.97438 * 20 19 17 22 22 C 1.32925 * 121.84450 * 359.97438 * 21 20 19 23 23 C 1.41070 * 120.20319 * 0.02562 * 22 21 20 24 24 C 1.45969 * 106.43840 * 179.97438 * 23 22 21 25 25 N 1.30203 * 107.58198 * 359.97438 * 24 23 22 26 26 N 1.36629 * 133.27320 * 180.02562 * 22 21 20 27 27 C 1.46497 * 125.33766 * 359.96968 * 26 22 21 28 28 C 1.39508 * 120.40802 * 179.72323 * 19 17 16 29 29 H 1.09003 * 109.47038 * 305.32915 * 1 2 3 30 30 H 1.09001 * 109.46843 * 65.32994 * 1 2 3 31 31 H 1.09002 * 109.47200 * 185.32781 * 1 2 3 32 32 H 1.08999 * 109.47297 * 239.99727 * 2 1 3 33 33 H 1.09002 * 109.47490 * 175.18401 * 3 2 1 34 34 H 1.08998 * 109.47155 * 295.18813 * 3 2 1 35 35 H 1.09002 * 109.47152 * 55.18505 * 3 2 1 36 36 H 0.96999 * 119.99965 * 180.02562 * 8 7 5 37 37 H 1.08998 * 109.46492 * 330.00471 * 13 4 2 38 38 H 1.09000 * 109.46961 * 209.99945 * 13 4 2 39 39 H 1.09002 * 109.46861 * 60.00735 * 14 13 4 40 40 H 1.08990 * 109.47354 * 300.00235 * 14 13 4 41 41 H 1.09007 * 109.46999 * 60.00291 * 15 14 13 42 42 H 1.09003 * 109.47625 * 300.00216 * 15 14 13 43 43 H 0.97004 * 119.99730 * 0.02562 * 16 15 14 44 44 H 1.08005 * 119.31191 * 0.02562 * 20 19 17 45 45 H 1.07993 * 126.20818 * 180.02562 * 24 23 22 46 46 H 1.09003 * 109.46890 * 90.00148 * 27 26 22 47 47 H 1.09001 * 109.47389 * 210.00021 * 27 26 22 48 48 H 1.09003 * 109.47558 * 329.99940 * 27 26 22 49 49 H 1.08000 * 121.02747 * 0.02562 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6557 -0.2459 2.4396 6 1 1.5323 0.8118 2.6200 7 6 1.4467 -1.1545 3.4680 8 7 1.5441 -0.7638 4.7211 9 14 1.0272 -2.9315 3.0734 10 1 2.2672 -3.7484 3.0906 11 1 0.0769 -3.4528 4.0886 12 1 0.4039 -3.0058 1.7277 13 6 2.8946 -1.8570 1.0622 14 6 4.3542 -1.3988 1.0432 15 6 5.2694 -2.6169 0.9039 16 7 6.6670 -2.1782 0.8851 17 6 7.6565 -3.0852 0.7635 18 8 7.3894 -4.2679 0.6744 19 6 9.0652 -2.6423 0.7384 20 6 9.3828 -1.2808 0.8400 21 7 10.6275 -0.8664 0.8203 22 6 11.6464 -1.7121 0.7042 23 6 11.4093 -3.0986 0.5969 24 6 12.7186 -3.7342 0.4853 25 7 13.6174 -2.7929 0.5250 26 7 13.0017 -1.5450 0.6592 27 6 13.7000 -0.2596 0.7371 28 6 10.0964 -3.5742 0.6186 29 1 -0.3633 0.5943 0.8384 30 1 -0.3633 0.4290 -0.9339 31 1 -0.3634 -1.0232 0.0954 32 1 1.8933 -0.5139 -0.8899 33 1 3.1266 1.4437 0.0863 34 1 1.7488 1.9308 -0.9299 35 1 1.6080 1.9806 0.8437 36 1 1.3984 -1.3988 5.4398 37 1 2.6654 -2.3787 0.1331 38 1 2.7358 -2.5294 1.9053 39 1 4.5834 -0.8770 1.9724 40 1 4.5130 -0.7263 0.2003 41 1 5.0403 -3.1392 -0.0251 42 1 5.1105 -3.2891 1.7472 43 1 6.8801 -1.2346 0.9565 44 1 8.5864 -0.5578 0.9373 45 1 12.9075 -4.7929 0.3867 46 1 13.9178 -0.0270 1.7796 47 1 14.6324 -0.3179 0.1755 48 1 13.0696 0.5227 0.3144 49 1 9.8857 -4.6307 0.5420 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713694639.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:25 Heat of formation + Delta-G solvation = 68.042762 kcal Electronic energy + Delta-G solvation = -29307.724348 eV Core-core repulsion = 25271.432353 eV Total energy + Delta-G solvation = -4036.291995 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.73525 -40.89804 -38.97584 -38.67089 -36.45276 -34.93716 -34.29274 -33.62746 -32.78298 -31.69630 -30.61924 -28.04979 -27.74651 -27.01348 -25.42176 -25.02426 -24.30022 -22.68175 -22.03601 -21.72786 -21.12902 -19.08683 -18.81146 -18.38745 -17.77697 -17.28813 -16.99783 -16.84250 -16.62309 -16.42796 -16.09435 -15.44845 -15.21370 -14.97563 -14.88530 -14.71338 -14.52165 -14.38764 -14.20377 -14.01667 -13.96448 -13.49982 -13.45808 -13.35509 -13.25987 -12.86763 -12.61161 -12.55231 -12.29905 -12.27675 -12.13651 -11.97601 -11.65857 -11.63393 -11.41214 -11.30930 -11.14668 -10.62031 -10.51254 -10.27348 -10.14528 -9.44376 -8.70831 -8.11551 -5.44347 -0.39258 -0.35794 1.03824 1.32249 1.33033 1.44587 1.53222 1.74265 2.06029 2.47283 2.68186 2.98357 3.11411 3.15625 3.38496 3.46380 3.60454 3.71997 3.92390 4.11769 4.15596 4.26598 4.33522 4.36205 4.38951 4.43977 4.46592 4.57578 4.62886 4.63795 4.75211 4.79332 4.83136 4.92661 4.99417 5.07823 5.12639 5.19427 5.23476 5.29857 5.30940 5.36638 5.49185 5.61688 5.62022 5.68336 6.04525 6.24770 6.29708 6.48009 6.66197 7.09356 7.13800 7.76326 8.15703 9.08653 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.016617 B = 0.002084 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.592619 B =13430.027521 C =13978.381038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.157 3.843 3 C -0.144 4.144 4 N -0.611 5.611 5 C -0.226 4.226 6 H 0.048 0.952 7 C -0.024 4.024 8 N -0.952 5.952 9 Si 0.931 3.069 10 H -0.279 1.279 11 H -0.321 1.321 12 H -0.258 1.258 13 C 0.132 3.868 14 C -0.128 4.128 15 C 0.128 3.872 16 N -0.710 5.710 17 C 0.570 3.430 18 O -0.579 6.579 19 C -0.242 4.242 20 C 0.211 3.789 21 N -0.518 5.518 22 C 0.310 3.690 23 C -0.251 4.251 24 C 0.110 3.890 25 N -0.262 5.262 26 N -0.400 5.400 27 C 0.103 3.897 28 C 0.078 3.922 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.033 0.967 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.070 0.930 35 H 0.028 0.972 36 H 0.258 0.742 37 H 0.068 0.932 38 H 0.027 0.973 39 H 0.053 0.947 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.045 0.955 43 H 0.413 0.587 44 H 0.194 0.806 45 H 0.245 0.755 46 H 0.081 0.919 47 H 0.104 0.896 48 H 0.096 0.904 49 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.280 -1.578 -13.701 26.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.051 3.949 3 C -0.203 4.203 4 N -0.334 5.334 5 C -0.356 4.356 6 H 0.066 0.934 7 C -0.219 4.219 8 N -0.598 5.598 9 Si 0.762 3.238 10 H -0.207 1.207 11 H -0.251 1.251 12 H -0.182 1.182 13 C 0.006 3.994 14 C -0.168 4.168 15 C 0.003 3.997 16 N -0.362 5.362 17 C 0.358 3.642 18 O -0.460 6.460 19 C -0.250 4.250 20 C 0.041 3.959 21 N -0.233 5.233 22 C 0.071 3.929 23 C -0.262 4.262 24 C -0.088 4.088 25 N -0.073 5.073 26 N -0.189 5.189 27 C -0.037 4.037 28 C 0.050 3.950 29 H 0.052 0.948 30 H 0.091 0.909 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.047 0.953 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.045 0.955 39 H 0.072 0.928 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.063 0.937 43 H 0.251 0.749 44 H 0.211 0.789 45 H 0.261 0.739 46 H 0.099 0.901 47 H 0.123 0.877 48 H 0.114 0.886 49 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 23.705 -1.086 -13.602 27.352 hybrid contribution -1.478 -1.274 0.847 2.127 sum 22.226 -2.360 -12.755 25.735 Atomic orbital electron populations 1.22079 0.97529 1.00296 1.00785 1.20698 0.92714 0.93053 0.88387 1.22052 1.00566 0.97150 1.00561 1.44407 1.53225 1.33643 1.02155 1.18516 1.39481 0.91601 0.86013 0.93446 1.25909 0.99999 1.01073 0.94941 1.69990 1.53796 1.36511 0.99513 0.86065 0.77320 0.83012 0.77386 1.20679 1.25054 1.18244 1.21187 0.89593 0.89356 0.99254 1.22148 0.95174 0.96805 1.02712 1.21271 0.79514 0.97259 1.01608 1.45833 1.05939 1.10858 1.73545 1.18069 0.85100 0.85324 0.75688 1.90765 1.84807 1.18156 1.52234 1.20531 0.93398 0.95813 1.15260 1.23246 0.92168 0.93319 0.87212 1.66739 0.98573 1.37827 1.20136 1.19490 0.87180 0.91119 0.95153 1.20682 0.95671 0.94004 1.15796 1.25824 0.86362 1.01094 0.95549 1.76750 1.22443 0.88830 1.19280 1.48485 1.00674 1.07144 1.62615 1.22097 0.98601 0.78704 1.04285 1.21332 0.88384 1.01260 0.84058 0.94751 0.90861 0.94795 0.90131 0.93181 0.91085 0.95280 0.93348 0.91363 0.95477 0.92792 0.89585 0.90677 0.93650 0.74916 0.78939 0.73906 0.90096 0.87696 0.88590 0.81740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.06 9.04 71.98 0.65 -4.41 16 2 C 0.16 5.34 3.36 44.99 0.15 5.50 16 3 C -0.14 -4.51 9.11 71.98 0.66 -3.85 16 4 N -0.61 -25.79 2.06 -678.03 -1.40 -27.19 16 5 C -0.23 -11.91 8.74 84.03 0.73 -11.17 16 6 H 0.05 2.79 7.17 -2.91 -0.02 2.77 16 7 C -0.02 -1.35 5.31 84.86 0.45 -0.90 16 8 N -0.95 -58.66 13.97 21.65 0.30 -58.36 16 9 Si 0.93 45.84 24.97 68.60 1.71 47.55 16 10 H -0.28 -13.26 6.66 99.48 0.66 -12.60 16 11 H -0.32 -16.49 7.11 99.48 0.71 -15.79 16 12 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 13 C 0.13 4.97 4.49 86.38 0.39 5.36 16 14 C -0.13 -3.95 5.65 30.59 0.17 -3.78 16 15 C 0.13 3.61 5.67 86.38 0.49 4.10 16 16 N -0.71 -16.59 5.51 -466.11 -2.57 -19.16 16 17 C 0.57 14.71 7.77 86.74 0.67 15.38 16 18 O -0.58 -19.13 16.40 -3.95 -0.06 -19.19 16 19 C -0.24 -5.07 5.89 -20.00 -0.12 -5.19 16 20 C 0.21 3.90 10.69 85.26 0.91 4.81 16 21 N -0.52 -10.97 10.37 -191.97 -1.99 -12.96 16 22 C 0.31 6.60 7.96 134.18 1.07 7.66 16 23 C -0.25 -4.71 6.36 -20.24 -0.13 -4.84 16 24 C 0.11 1.54 12.30 86.94 1.07 2.61 16 25 N -0.26 -4.67 12.39 -53.08 -0.66 -5.33 16 26 N -0.40 -7.49 4.03 -366.44 -1.48 -8.97 16 27 C 0.10 1.20 11.43 127.77 1.46 2.66 16 28 C 0.08 1.50 9.76 22.92 0.22 1.72 16 29 H 0.03 1.33 7.80 -2.39 -0.02 1.31 16 30 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 2.31 7.78 -2.39 -0.02 2.29 16 33 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.03 1.05 7.25 -2.39 -0.02 1.03 16 36 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 37 H 0.07 2.21 7.90 -2.39 -0.02 2.19 16 38 H 0.03 1.19 2.97 -2.39 -0.01 1.18 16 39 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 42 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.41 7.22 6.51 -92.71 -0.60 6.61 16 44 H 0.19 2.38 6.39 -2.91 -0.02 2.36 16 45 H 0.24 1.08 8.06 -2.91 -0.02 1.06 16 46 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.17 2.75 7.72 -2.91 -0.02 2.72 16 Total: -1.00 -76.03 401.53 3.03 -73.00 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.32 Total: 14.96 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: 8.85 Total: 15.66 kcal Atomic # 7 Polarization: -124.18 SS G_CDS: -7.79 Total: -131.97 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.06 Total: -19.19 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.71 Total: 47.55 kcal Total: -76.03 3.03 -73.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713694639.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.043 kcal (2) G-P(sol) polarization free energy of solvation -76.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds