Wall clock time and date at job start Wed Apr 1 2020 03:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46940 * 2 1 4 4 N 1.46498 * 109.46924 * 179.97438 * 3 2 1 5 5 C 1.36939 * 120.00286 * 264.11640 * 4 3 2 6 6 H 1.08000 * 120.00246 * 188.01955 * 5 4 3 7 7 C 1.38815 * 119.99597 * 8.01360 * 5 4 3 8 8 N 1.31618 * 120.00098 * 25.65074 * 7 5 4 9 9 Si 1.86803 * 119.99700 * 205.64543 * 7 5 4 10 10 H 1.48498 * 109.46911 * 84.99179 * 9 7 5 11 11 H 1.48500 * 109.46886 * 204.99349 * 9 7 5 12 12 H 1.48496 * 109.47035 * 324.98931 * 9 7 5 13 13 C 1.46498 * 120.00059 * 84.12086 * 4 3 2 14 14 C 1.53007 * 109.46723 * 270.00130 * 13 4 3 15 15 N 1.46507 * 109.46790 * 180.02562 * 14 13 4 16 16 C 1.34774 * 119.99769 * 180.27593 * 15 14 13 17 17 O 1.21568 * 119.99872 * 359.71419 * 16 15 14 18 18 C 1.47760 * 119.99932 * 179.72276 * 16 15 14 19 19 C 1.39637 * 121.07562 * 359.97438 * 18 16 15 20 20 C 1.38342 * 119.37922 * 179.97438 * 19 18 16 21 21 N 1.31729 * 121.53935 * 359.97438 * 20 19 18 22 22 C 1.32105 * 121.95344 * 0.02562 * 21 20 19 23 23 N 1.37952 * 133.80765 * 180.02562 * 22 21 20 24 24 H 0.96993 * 126.35254 * 359.95741 * 23 22 21 25 25 C 1.35990 * 107.28194 * 179.39142 * 23 22 21 26 26 C 1.50699 * 124.97167 * 180.02562 * 25 23 22 27 27 C 1.52996 * 109.47382 * 125.48010 * 26 25 23 28 28 N 1.30278 * 110.05813 * 0.49824 * 25 23 22 29 29 C 1.34658 * 109.67007 * 359.56272 * 28 25 23 30 30 H 1.09008 * 109.46665 * 59.99905 * 1 2 3 31 31 H 1.09003 * 109.47065 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47347 * 300.00300 * 1 2 3 33 33 H 1.09000 * 109.47118 * 240.00511 * 2 1 3 34 34 H 1.08999 * 109.47229 * 120.00035 * 2 1 3 35 35 H 1.08999 * 109.46709 * 59.99769 * 3 2 1 36 36 H 1.08999 * 109.47187 * 300.00060 * 3 2 1 37 37 H 0.96997 * 119.99765 * 179.97438 * 8 7 5 38 38 H 1.08992 * 109.47625 * 149.99840 * 13 4 3 39 39 H 1.09003 * 109.47124 * 29.99352 * 13 4 3 40 40 H 1.08989 * 109.47627 * 59.99935 * 14 13 4 41 41 H 1.09000 * 109.47005 * 299.99068 * 14 13 4 42 42 H 0.96997 * 119.99821 * 359.97438 * 15 14 13 43 43 H 1.08002 * 120.30733 * 359.95900 * 19 18 16 44 44 H 1.07996 * 119.22769 * 180.02562 * 20 19 18 45 45 H 1.08997 * 109.47273 * 245.48399 * 26 25 23 46 46 H 1.09003 * 109.46853 * 5.47747 * 26 25 23 47 47 H 1.09001 * 109.46911 * 300.00016 * 27 26 25 48 48 H 1.09003 * 109.47341 * 60.00036 * 27 26 25 49 49 H 1.08996 * 109.47211 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1892 1.5643 1.1805 6 1 5.2613 1.6946 1.1721 7 6 3.5048 1.5204 2.3874 8 7 2.3546 0.8858 2.4690 9 14 4.2164 2.3619 3.8958 10 1 3.8295 3.7956 3.8914 11 1 3.6884 1.7103 5.1213 12 1 5.6968 2.2485 3.8736 13 6 4.2380 1.3124 -1.2611 14 6 4.4931 -0.1679 -1.5523 15 7 5.2267 -0.2980 -2.8138 16 6 5.5590 -1.5192 -3.2771 17 8 5.2546 -2.5124 -2.6457 18 6 6.2935 -1.6508 -4.5524 19 6 6.6541 -0.5252 -5.2960 20 6 7.3419 -0.6890 -6.4851 21 7 7.6665 -1.8841 -6.9343 22 6 7.3539 -2.9867 -6.2772 23 7 7.5644 -4.3298 -6.5110 24 1 8.0220 -4.7158 -7.2741 25 6 7.0223 -5.0115 -5.4666 26 6 7.0290 -6.5110 -5.3172 27 6 7.6456 -6.8865 -3.9682 28 7 6.4877 -4.1790 -4.6190 29 6 6.6581 -2.9164 -5.0548 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6767 1.9564 -0.8900 37 1 1.8766 0.8548 3.3124 38 1 5.1903 1.8369 -1.1838 39 1 3.6492 1.7455 -2.0697 40 1 3.5408 -0.6923 -1.6296 41 1 5.0819 -0.6010 -0.7437 42 1 5.4694 0.4945 -3.3176 43 1 6.3982 0.4640 -4.9461 44 1 7.6199 0.1832 -7.0580 45 1 6.0066 -6.8856 -5.3661 46 1 7.6169 -6.9536 -6.1213 47 1 8.6681 -6.5120 -3.9193 48 1 7.0577 -6.4439 -3.1641 49 1 7.6508 -7.9711 -3.8604 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714655833.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:50 Heat of formation + Delta-G solvation = 72.673561 kcal Electronic energy + Delta-G solvation = -29787.421882 eV Core-core repulsion = 25751.330694 eV Total energy + Delta-G solvation = -4036.091188 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.69345 -39.54902 -38.34630 -36.52855 -34.39989 -33.93370 -33.80907 -31.98898 -31.81445 -31.04097 -29.42703 -27.89075 -25.48855 -25.42638 -24.04836 -23.46604 -22.68738 -21.01877 -20.80237 -20.69195 -19.87023 -18.50404 -17.84107 -17.25781 -16.78350 -16.17310 -15.57411 -15.30141 -14.98382 -14.91722 -14.73499 -14.55529 -14.24168 -13.83196 -13.70345 -13.42068 -13.24008 -12.87339 -12.80203 -12.64212 -12.37380 -12.31491 -11.95327 -11.56097 -11.53562 -11.32244 -11.24878 -11.04388 -10.99952 -10.82757 -10.59047 -10.36924 -10.00539 -9.93953 -9.87004 -9.69390 -9.28600 -9.18926 -9.15803 -8.68055 -8.51689 -8.31467 -6.91335 -5.75875 -3.07418 0.20771 0.89748 2.17630 2.49572 3.02564 3.30064 3.41937 3.49765 3.50045 3.67012 3.79652 4.12115 4.32001 4.50365 4.54329 4.61182 4.71576 4.81610 4.86825 5.12521 5.27799 5.33466 5.44737 5.48463 5.56582 5.60014 5.69362 5.75179 5.87007 5.97995 6.01529 6.22606 6.26312 6.28794 6.32205 6.57431 6.69174 6.71713 6.73008 6.79118 6.90901 7.04810 7.22843 7.31198 7.53114 7.57663 7.69840 7.80058 7.82446 8.14256 8.35921 8.51542 9.24225 9.85915 10.30129 11.27488 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.013548 B = 0.002324 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.238658 B =12043.209914 C =12481.476392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.171 3.829 4 N -0.591 5.591 5 C -0.256 4.256 6 H 0.075 0.925 7 C 0.001 3.999 8 N -0.890 5.890 9 Si 0.897 3.103 10 H -0.289 1.289 11 H -0.293 1.293 12 H -0.282 1.282 13 C 0.143 3.857 14 C 0.091 3.909 15 N -0.719 5.719 16 C 0.544 3.456 17 O -0.503 6.503 18 C -0.029 4.029 19 C -0.151 4.151 20 C 0.131 3.869 21 N -0.471 5.471 22 C 0.232 3.768 23 N -0.587 5.587 24 H 0.427 0.573 25 C 0.295 3.705 26 C -0.042 4.042 27 C -0.147 4.147 28 N -0.452 5.452 29 C 0.056 3.944 30 H 0.030 0.970 31 H 0.033 0.967 32 H 0.051 0.949 33 H 0.021 0.979 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.003 0.997 37 H 0.252 0.748 38 H 0.050 0.950 39 H 0.043 0.957 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.393 0.607 43 H 0.150 0.850 44 H 0.173 0.827 45 H 0.101 0.899 46 H 0.084 0.916 47 H 0.055 0.945 48 H 0.076 0.924 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.462 -8.385 -20.850 24.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.046 3.954 4 N -0.311 5.311 5 C -0.385 4.385 6 H 0.093 0.907 7 C -0.197 4.197 8 N -0.535 5.535 9 Si 0.727 3.273 10 H -0.216 1.216 11 H -0.220 1.220 12 H -0.208 1.208 13 C 0.015 3.985 14 C -0.034 4.034 15 N -0.371 5.371 16 C 0.328 3.672 17 O -0.377 6.377 18 C -0.042 4.042 19 C -0.175 4.175 20 C -0.035 4.035 21 N -0.185 5.185 22 C -0.005 4.005 23 N -0.201 5.201 24 H 0.267 0.733 25 C 0.028 3.972 26 C -0.082 4.082 27 C -0.205 4.205 28 N -0.170 5.170 29 C -0.068 4.068 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.040 0.960 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.021 0.979 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.227 0.773 43 H 0.168 0.832 44 H 0.190 0.810 45 H 0.120 0.880 46 H 0.103 0.897 47 H 0.074 0.926 48 H 0.095 0.905 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.109 -9.420 -20.148 24.034 hybrid contribution 0.678 0.803 0.082 1.054 sum 9.787 -8.618 -20.066 23.931 Atomic orbital electron populations 1.21628 0.98603 0.99313 0.99962 1.22229 0.92892 1.00483 1.01428 1.20934 0.81526 0.94532 0.98406 1.44247 1.01912 1.83552 1.01393 1.19270 0.92251 1.43463 0.83482 0.90742 1.24725 0.97584 1.00105 0.97277 1.70165 1.17184 1.41168 1.24974 0.86374 0.78416 0.79872 0.82634 1.21617 1.21991 1.20772 1.20957 0.96385 0.91662 0.89530 1.22777 0.95904 1.01718 0.83035 1.46115 1.58313 1.07081 1.25635 1.17979 0.80391 0.84277 0.84589 1.90865 1.52488 1.36740 1.57618 1.19869 0.98015 0.90526 0.95752 1.22218 1.00192 0.98819 0.96224 1.22485 0.94480 0.92931 0.93629 1.66178 1.21256 0.96803 1.34221 1.18891 1.01217 0.85904 0.94520 1.42788 1.50527 1.03831 1.22992 0.73349 1.24027 0.93000 0.96823 0.83304 1.20200 1.04097 0.83499 1.00361 1.21721 1.01195 1.01663 0.95942 1.70321 1.21311 0.98545 1.26853 1.19265 1.00968 0.92683 0.93848 0.95111 0.94819 0.93003 0.96005 0.88341 0.89202 0.97855 0.93726 0.93159 0.93863 0.91437 0.91347 0.77298 0.83212 0.81025 0.88039 0.89748 0.92566 0.90492 0.91344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.91 37.16 0.37 -2.33 16 2 C -0.13 -2.99 5.60 -26.73 -0.15 -3.14 16 3 C 0.17 4.01 4.92 -4.04 -0.02 3.99 16 4 N -0.59 -14.09 2.54 -173.24 -0.44 -14.53 16 5 C -0.26 -6.75 9.70 -15.06 -0.15 -6.89 16 6 H 0.07 1.94 7.94 -52.49 -0.42 1.52 16 7 C 0.00 0.03 4.89 -17.43 -0.09 -0.06 16 8 N -0.89 -24.39 8.62 55.49 0.48 -23.92 16 9 Si 0.90 21.37 29.62 -169.99 -5.04 16.34 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.14 2.75 5.82 -4.04 -0.02 2.72 16 14 C 0.09 1.76 5.88 -4.03 -0.02 1.73 16 15 N -0.72 -11.16 5.51 -61.27 -0.34 -11.50 16 16 C 0.54 9.57 7.79 -12.37 -0.10 9.47 16 17 O -0.50 -11.15 16.19 5.31 0.09 -11.07 16 18 C -0.03 -0.42 5.93 -104.45 -0.62 -1.04 16 19 C -0.15 -1.52 9.60 -39.02 -0.37 -1.90 16 20 C 0.13 1.20 11.14 -17.56 -0.20 1.00 16 21 N -0.47 -5.43 10.35 -12.30 -0.13 -5.56 16 22 C 0.23 2.94 8.46 -155.64 -1.32 1.62 16 23 N -0.59 -5.61 6.23 -9.43 -0.06 -5.66 16 24 H 0.43 2.44 8.96 -40.82 -0.37 2.08 16 25 C 0.30 3.21 7.37 -154.73 -1.14 2.07 16 26 C -0.04 -0.28 6.56 -27.89 -0.18 -0.47 16 27 C -0.15 -1.10 9.85 37.16 0.37 -0.73 16 28 N -0.45 -7.05 10.57 -8.07 -0.09 -7.13 16 29 C 0.06 0.86 6.85 -84.61 -0.58 0.28 16 30 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.02 0.49 5.98 -51.93 -0.31 0.17 16 34 H 0.10 2.61 6.33 -51.93 -0.33 2.28 16 35 H 0.09 2.35 5.85 -51.93 -0.30 2.04 16 36 H 0.00 0.07 7.98 -51.93 -0.41 -0.34 16 37 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 38 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 39 H 0.04 0.74 7.95 -51.93 -0.41 0.33 16 40 H 0.07 1.45 5.92 -51.94 -0.31 1.15 16 41 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 42 H 0.39 4.53 6.61 -40.82 -0.27 4.26 16 43 H 0.15 1.00 6.53 -52.49 -0.34 0.66 16 44 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 398.96 15.07 6.01 6.01 Total: -1.00 -35.21 398.96 -10.98 -46.20 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -7.25 Total: 4.48 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -4.22 Total: 6.35 kcal Atomic # 7 Polarization: -67.74 SS G_CDS: -0.57 Total: -68.31 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.04 Total: 16.34 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.21 -10.98 -46.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714655833.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.869 kcal (2) G-P(sol) polarization free energy of solvation -35.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds