Wall clock time and date at job start Wed Apr 1 2020 03:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46940 * 2 1 4 4 N 1.46498 * 109.46924 * 179.97438 * 3 2 1 5 5 C 1.36939 * 120.00286 * 264.11640 * 4 3 2 6 6 H 1.08000 * 120.00246 * 188.01955 * 5 4 3 7 7 C 1.38815 * 119.99597 * 8.01360 * 5 4 3 8 8 N 1.31618 * 120.00098 * 25.65074 * 7 5 4 9 9 Si 1.86803 * 119.99700 * 205.64543 * 7 5 4 10 10 H 1.48498 * 109.46911 * 84.99179 * 9 7 5 11 11 H 1.48500 * 109.46886 * 204.99349 * 9 7 5 12 12 H 1.48496 * 109.47035 * 324.98931 * 9 7 5 13 13 C 1.46498 * 120.00059 * 84.12086 * 4 3 2 14 14 C 1.53007 * 109.46723 * 270.00130 * 13 4 3 15 15 N 1.46507 * 109.46790 * 180.02562 * 14 13 4 16 16 C 1.34774 * 119.99769 * 180.27593 * 15 14 13 17 17 O 1.21568 * 119.99872 * 359.71419 * 16 15 14 18 18 C 1.47760 * 119.99932 * 179.72276 * 16 15 14 19 19 C 1.39637 * 121.07562 * 359.97438 * 18 16 15 20 20 C 1.38342 * 119.37922 * 179.97438 * 19 18 16 21 21 N 1.31729 * 121.53935 * 359.97438 * 20 19 18 22 22 C 1.32105 * 121.95344 * 0.02562 * 21 20 19 23 23 N 1.37952 * 133.80765 * 180.02562 * 22 21 20 24 24 H 0.96993 * 126.35254 * 359.95741 * 23 22 21 25 25 C 1.35990 * 107.28194 * 179.39142 * 23 22 21 26 26 C 1.50699 * 124.97167 * 180.02562 * 25 23 22 27 27 C 1.52996 * 109.47382 * 125.48010 * 26 25 23 28 28 N 1.30278 * 110.05813 * 0.49824 * 25 23 22 29 29 C 1.34658 * 109.67007 * 359.56272 * 28 25 23 30 30 H 1.09008 * 109.46665 * 59.99905 * 1 2 3 31 31 H 1.09003 * 109.47065 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47347 * 300.00300 * 1 2 3 33 33 H 1.09000 * 109.47118 * 240.00511 * 2 1 3 34 34 H 1.08999 * 109.47229 * 120.00035 * 2 1 3 35 35 H 1.08999 * 109.46709 * 59.99769 * 3 2 1 36 36 H 1.08999 * 109.47187 * 300.00060 * 3 2 1 37 37 H 0.96997 * 119.99765 * 179.97438 * 8 7 5 38 38 H 1.08992 * 109.47625 * 149.99840 * 13 4 3 39 39 H 1.09003 * 109.47124 * 29.99352 * 13 4 3 40 40 H 1.08989 * 109.47627 * 59.99935 * 14 13 4 41 41 H 1.09000 * 109.47005 * 299.99068 * 14 13 4 42 42 H 0.96997 * 119.99821 * 359.97438 * 15 14 13 43 43 H 1.08002 * 120.30733 * 359.95900 * 19 18 16 44 44 H 1.07996 * 119.22769 * 180.02562 * 20 19 18 45 45 H 1.08997 * 109.47273 * 245.48399 * 26 25 23 46 46 H 1.09003 * 109.46853 * 5.47747 * 26 25 23 47 47 H 1.09001 * 109.46911 * 300.00016 * 27 26 25 48 48 H 1.09003 * 109.47341 * 60.00036 * 27 26 25 49 49 H 1.08996 * 109.47211 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1892 1.5643 1.1805 6 1 5.2613 1.6946 1.1721 7 6 3.5048 1.5204 2.3874 8 7 2.3546 0.8858 2.4690 9 14 4.2164 2.3619 3.8958 10 1 3.8295 3.7956 3.8914 11 1 3.6884 1.7103 5.1213 12 1 5.6968 2.2485 3.8736 13 6 4.2380 1.3124 -1.2611 14 6 4.4931 -0.1679 -1.5523 15 7 5.2267 -0.2980 -2.8138 16 6 5.5590 -1.5192 -3.2771 17 8 5.2546 -2.5124 -2.6457 18 6 6.2935 -1.6508 -4.5524 19 6 6.6541 -0.5252 -5.2960 20 6 7.3419 -0.6890 -6.4851 21 7 7.6665 -1.8841 -6.9343 22 6 7.3539 -2.9867 -6.2772 23 7 7.5644 -4.3298 -6.5110 24 1 8.0220 -4.7158 -7.2741 25 6 7.0223 -5.0115 -5.4666 26 6 7.0290 -6.5110 -5.3172 27 6 7.6456 -6.8865 -3.9682 28 7 6.4877 -4.1790 -4.6190 29 6 6.6581 -2.9164 -5.0548 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6767 1.9564 -0.8900 37 1 1.8766 0.8548 3.3124 38 1 5.1903 1.8369 -1.1838 39 1 3.6492 1.7455 -2.0697 40 1 3.5408 -0.6923 -1.6296 41 1 5.0819 -0.6010 -0.7437 42 1 5.4694 0.4945 -3.3176 43 1 6.3982 0.4640 -4.9461 44 1 7.6199 0.1832 -7.0580 45 1 6.0066 -6.8856 -5.3661 46 1 7.6169 -6.9536 -6.1213 47 1 8.6681 -6.5120 -3.9193 48 1 7.0577 -6.4439 -3.1641 49 1 7.6508 -7.9711 -3.8604 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714655833.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:49 Heat of formation + Delta-G solvation = 48.747852 kcal Electronic energy + Delta-G solvation = -29788.459379 eV Core-core repulsion = 25751.330694 eV Total energy + Delta-G solvation = -4037.128685 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.55458 -40.81794 -39.32320 -38.30998 -35.94558 -34.82481 -34.50855 -33.73735 -33.33160 -32.39467 -30.25673 -29.49741 -27.35383 -26.36653 -25.32650 -24.47686 -23.85582 -22.45534 -22.04407 -21.77646 -21.58001 -19.61019 -18.76159 -18.66229 -18.22142 -17.08711 -16.99604 -16.68335 -16.41809 -16.23634 -15.72718 -15.60835 -15.41412 -15.19149 -14.99830 -14.84027 -14.58127 -14.33302 -14.10938 -13.95571 -13.63086 -13.40989 -13.04895 -13.00909 -12.79707 -12.63984 -12.55364 -12.39621 -12.24451 -12.17076 -12.13762 -11.87575 -11.79766 -11.69095 -11.54561 -11.30002 -11.08393 -10.33725 -10.26636 -10.18079 -9.92898 -9.51862 -8.84533 -7.78069 -5.10531 -0.73551 0.06324 1.42528 1.50531 1.53004 1.58594 1.59359 1.88203 2.01128 2.58017 2.78701 2.93303 3.29485 3.31318 3.55394 3.58784 3.77782 3.82632 4.03031 4.16070 4.23659 4.27298 4.33517 4.44877 4.53825 4.57898 4.63947 4.65305 4.71689 4.82963 4.85974 4.95181 4.97223 4.99929 5.06273 5.07884 5.13943 5.27121 5.36023 5.43925 5.45904 5.50246 5.53706 5.67089 5.89094 6.11740 6.20190 6.38195 6.53964 6.70938 6.76401 7.21473 7.24268 7.94101 8.33067 9.22880 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.013548 B = 0.002324 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.238658 B =12043.209914 C =12481.476392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.122 4.122 3 C 0.175 3.825 4 N -0.606 5.606 5 C -0.264 4.264 6 H 0.074 0.926 7 C -0.048 4.048 8 N -0.909 5.909 9 Si 0.955 3.045 10 H -0.286 1.286 11 H -0.302 1.302 12 H -0.278 1.278 13 C 0.146 3.854 14 C 0.112 3.888 15 N -0.700 5.700 16 C 0.543 3.457 17 O -0.563 6.563 18 C -0.066 4.066 19 C -0.125 4.125 20 C 0.137 3.863 21 N -0.473 5.473 22 C 0.220 3.780 23 N -0.569 5.569 24 H 0.445 0.555 25 C 0.304 3.696 26 C -0.040 4.040 27 C -0.144 4.144 28 N -0.515 5.515 29 C 0.020 3.980 30 H 0.055 0.945 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.020 0.980 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.028 0.972 37 H 0.245 0.755 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.042 0.958 41 H 0.027 0.973 42 H 0.416 0.584 43 H 0.187 0.813 44 H 0.223 0.777 45 H 0.108 0.892 46 H 0.128 0.872 47 H 0.052 0.948 48 H 0.037 0.963 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.782 -7.136 -24.193 27.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.161 4.161 3 C 0.050 3.950 4 N -0.327 5.327 5 C -0.393 4.393 6 H 0.091 0.909 7 C -0.243 4.243 8 N -0.555 5.555 9 Si 0.784 3.216 10 H -0.213 1.213 11 H -0.229 1.229 12 H -0.203 1.203 13 C 0.019 3.981 14 C -0.014 4.014 15 N -0.354 5.354 16 C 0.329 3.671 17 O -0.441 6.441 18 C -0.079 4.079 19 C -0.148 4.148 20 C -0.029 4.029 21 N -0.186 5.186 22 C -0.017 4.017 23 N -0.186 5.186 24 H 0.288 0.712 25 C 0.037 3.963 26 C -0.079 4.079 27 C -0.202 4.202 28 N -0.235 5.235 29 C -0.104 4.104 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.055 0.945 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.060 0.940 41 H 0.046 0.954 42 H 0.255 0.745 43 H 0.205 0.795 44 H 0.239 0.761 45 H 0.126 0.874 46 H 0.146 0.854 47 H 0.071 0.929 48 H 0.057 0.943 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.474 -8.147 -23.569 27.048 hybrid contribution 0.337 0.403 1.015 1.143 sum 10.811 -7.744 -22.554 26.183 Atomic orbital electron populations 1.21528 0.96120 1.00277 1.00708 1.22030 0.95091 0.99775 0.99211 1.20825 0.81623 0.94515 0.98070 1.44441 1.02334 1.83723 1.02216 1.19505 0.92405 1.42761 0.84666 0.90853 1.25369 0.98393 1.00983 0.99603 1.70341 1.18203 1.42084 1.24901 0.85469 0.77834 0.78716 0.79536 1.21298 1.22940 1.20298 1.21102 0.97267 0.91172 0.88553 1.22222 0.94291 1.01374 0.83528 1.45762 1.57450 1.07783 1.24395 1.18537 0.79582 0.83654 0.85311 1.90826 1.54958 1.38689 1.59634 1.19775 1.00532 0.92237 0.95358 1.22665 0.97837 0.98835 0.95446 1.23369 0.92710 0.93547 0.93239 1.66346 1.21082 0.97163 1.34042 1.19054 1.01486 0.87192 0.93985 1.42733 1.49867 1.02789 1.23183 0.71151 1.24715 0.91137 0.98003 0.82489 1.20451 1.05308 0.80933 1.01186 1.21681 1.00246 1.03016 0.95290 1.70269 1.24109 0.99703 1.29452 1.19665 1.02338 0.92982 0.95401 0.92608 0.93802 0.93877 0.96144 0.92543 0.92023 0.95362 0.94498 0.91529 0.90680 0.93971 0.95408 0.74546 0.79547 0.76087 0.87364 0.85358 0.92868 0.94333 0.88719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.99 9.91 71.98 0.71 -4.28 16 2 C -0.12 -5.65 5.60 30.60 0.17 -5.48 16 3 C 0.17 8.20 4.92 86.38 0.43 8.63 16 4 N -0.61 -28.95 2.54 -702.00 -1.78 -30.73 16 5 C -0.26 -14.06 9.70 84.03 0.81 -13.25 16 6 H 0.07 3.84 7.94 -2.91 -0.02 3.82 16 7 C -0.05 -2.61 4.89 84.86 0.41 -2.20 16 8 N -0.91 -51.48 8.62 21.65 0.19 -51.29 16 9 Si 0.95 44.78 29.62 68.60 2.03 46.81 16 10 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 C 0.15 5.43 5.82 86.38 0.50 5.94 16 14 C 0.11 4.45 5.88 86.38 0.51 4.96 16 15 N -0.70 -21.48 5.51 -466.04 -2.57 -24.05 16 16 C 0.54 19.75 7.79 86.76 0.68 20.42 16 17 O -0.56 -26.85 16.19 -3.93 -0.06 -26.92 16 18 C -0.07 -1.92 5.93 -19.75 -0.12 -2.03 16 19 C -0.13 -2.15 9.60 22.63 0.22 -1.93 16 20 C 0.14 1.97 11.14 84.73 0.94 2.92 16 21 N -0.47 -9.64 10.35 -192.83 -2.00 -11.63 16 22 C 0.22 5.35 8.46 133.92 1.13 6.49 16 23 N -0.57 -10.20 6.23 -183.76 -1.14 -11.35 16 24 H 0.44 4.12 8.96 -92.71 -0.83 3.29 16 25 C 0.30 6.60 7.37 137.89 1.02 7.61 16 26 C -0.04 -0.49 6.56 29.85 0.20 -0.29 16 27 C -0.14 -2.16 9.85 71.98 0.71 -1.45 16 28 N -0.52 -16.96 10.57 -179.45 -1.90 -18.86 16 29 C 0.02 0.63 6.85 40.01 0.27 0.90 16 30 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.02 0.93 5.98 -2.39 -0.01 0.91 16 34 H 0.06 3.12 6.33 -2.39 -0.02 3.11 16 35 H 0.06 3.27 5.85 -2.39 -0.01 3.25 16 36 H 0.03 1.17 7.98 -2.39 -0.02 1.15 16 37 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 38 H 0.07 2.27 8.03 -2.39 -0.02 2.25 16 39 H 0.07 2.34 7.95 -2.39 -0.02 2.32 16 40 H 0.04 1.89 5.92 -2.39 -0.01 1.88 16 41 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.42 8.55 6.61 -92.71 -0.61 7.93 16 43 H 0.19 1.61 6.53 -2.91 -0.02 1.60 16 44 H 0.22 0.90 8.06 -2.91 -0.02 0.88 16 45 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 47 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -84.35 398.96 0.92 -83.43 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -0.45 Total: 17.65 kcal Atomic # 6 Polarization: 18.35 SS G_CDS: 8.60 Total: 26.94 kcal Atomic # 7 Polarization: -138.72 SS G_CDS: -9.20 Total: -147.92 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.06 Total: -26.92 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -84.35 0.92 -83.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714655833.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.180 kcal (2) G-P(sol) polarization free energy of solvation -84.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds