Wall clock time and date at job start Wed Apr 1 2020 03:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.53002 * 109.47088 * 269.99330 * 3 2 1 5 5 C 1.52999 * 109.47481 * 300.00513 * 4 3 2 6 6 C 1.53001 * 109.46829 * 60.00275 * 4 3 2 7 7 C 1.52995 * 109.47427 * 179.97438 * 4 3 2 8 8 N 1.46503 * 109.47393 * 180.02562 * 7 4 3 9 9 C 1.36936 * 119.99889 * 180.02562 * 8 7 4 10 10 H 1.07996 * 120.00380 * 359.97438 * 9 8 7 11 11 C 1.38809 * 119.99703 * 180.02562 * 9 8 7 12 12 N 1.31617 * 120.00285 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00110 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46741 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47104 * 119.99793 * 13 11 9 16 16 H 1.48496 * 109.47452 * 240.00042 * 13 11 9 17 17 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 18 18 O 1.21283 * 119.99750 * 180.02562 * 17 2 1 19 19 C 1.50702 * 119.99928 * 0.28128 * 17 2 1 20 20 N 1.46491 * 109.46957 * 179.72354 * 19 17 2 21 21 N 1.39836 * 125.38961 * 269.69002 * 20 19 17 22 22 C 1.30234 * 110.09780 * 179.83752 * 21 20 19 23 23 C 1.45858 * 107.65499 * 0.41731 * 22 21 20 24 24 C 1.39993 * 134.26435 * 179.71875 * 23 22 21 25 25 C 1.37014 * 118.15997 * 180.02562 * 24 23 22 26 26 C 1.38803 * 119.64641 * 359.97438 * 25 24 23 27 27 N 1.31508 * 121.58988 * 359.97438 * 26 25 24 28 28 C 1.32767 * 121.47131 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 30 30 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 31 31 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 32 32 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 33 33 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 34 34 H 1.08998 * 109.46857 * 59.99368 * 5 4 3 35 35 H 1.08993 * 109.46968 * 179.97438 * 5 4 3 36 36 H 1.08996 * 109.46881 * 299.99845 * 5 4 3 37 37 H 1.09001 * 109.47207 * 60.00301 * 6 4 3 38 38 H 1.09002 * 109.47399 * 179.97438 * 6 4 3 39 39 H 1.08998 * 109.47342 * 299.99886 * 6 4 3 40 40 H 1.09006 * 109.47343 * 300.00688 * 7 4 3 41 41 H 1.09005 * 109.46868 * 60.00504 * 7 4 3 42 42 H 0.96998 * 119.99783 * 0.02562 * 8 7 4 43 43 H 0.96997 * 120.00450 * 180.02562 * 12 11 9 44 44 H 1.09004 * 109.46965 * 299.72211 * 19 17 2 45 45 H 1.08994 * 109.46990 * 59.72065 * 19 17 2 46 46 H 1.08001 * 126.17486 * 180.15318 * 22 21 20 47 47 H 1.08003 * 120.92029 * 0.03842 * 24 23 22 48 48 H 1.07995 * 120.18073 * 180.02562 * 25 24 23 49 49 H 1.08000 * 119.20717 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 6 3.2795 0.6441 -2.1637 6 6 1.1157 1.8932 -2.1638 7 6 3.2169 3.0357 -1.4426 8 7 3.4606 3.4589 -2.8239 9 6 4.1336 4.6249 -3.0741 10 1 4.4843 5.2328 -2.2533 11 6 4.3640 5.0261 -4.3828 12 7 3.9362 4.2855 -5.3832 13 14 5.2815 6.6171 -4.7243 14 1 5.6537 7.2596 -3.4382 15 1 6.5106 6.3222 -5.5037 16 1 4.4100 7.5339 -5.5022 17 6 2.1390 -1.1672 0.0005 18 8 3.3518 -1.1671 0.0010 19 6 1.3855 -2.4723 -0.0053 20 7 2.3376 -3.5857 -0.0102 21 7 2.8593 -4.2001 -1.1528 22 6 3.6797 -5.1530 -0.8135 23 6 3.7189 -5.2049 0.6436 24 6 4.3956 -6.0013 1.5751 25 6 4.1840 -5.7599 2.9071 26 6 3.3173 -4.7464 3.2919 27 7 2.6884 -4.0046 2.4066 28 6 2.8536 -4.1919 1.1026 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3632 -0.8900 -0.5138 32 1 1.6083 2.0285 0.5137 33 1 3.1499 1.1385 0.5139 34 1 2.7345 -0.2999 -2.1636 35 1 3.4608 0.9586 -3.1914 36 1 4.2318 0.5138 -1.6499 37 1 0.5266 2.6529 -1.6501 38 1 1.2973 2.2083 -3.1914 39 1 0.5707 0.9493 -2.1638 40 1 2.6274 3.7952 -0.9289 41 1 4.1693 2.9059 -0.9286 42 1 3.1453 2.9131 -3.5611 43 1 4.0975 4.5656 -6.2977 44 1 0.7588 -2.5340 0.8844 45 1 0.7590 -2.5261 -0.8955 46 1 4.2284 -5.7924 -1.4891 47 1 5.0661 -6.7842 1.2526 48 1 4.6896 -6.3544 3.6536 49 1 3.1554 -4.5625 4.3437 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717455738.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:07 Heat of formation + Delta-G solvation = 93.644620 kcal Electronic energy + Delta-G solvation = -30520.043591 eV Core-core repulsion = 26484.861776 eV Total energy + Delta-G solvation = -4035.181815 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.81537 -40.19929 -38.34402 -37.29072 -35.13990 -34.08871 -33.08239 -32.00235 -30.38801 -30.19149 -28.31187 -27.72966 -26.52125 -25.74336 -24.99897 -24.22370 -22.99430 -22.51603 -21.33023 -19.55278 -18.36250 -17.94543 -17.46701 -17.29239 -17.17809 -16.44238 -16.06757 -15.78708 -15.31298 -14.69112 -14.42338 -14.35308 -14.08921 -13.87967 -13.60582 -13.51468 -13.27784 -13.20737 -12.88753 -12.81667 -12.68504 -12.58576 -12.47934 -12.15630 -12.05170 -11.22955 -11.21319 -11.09723 -10.99408 -10.93125 -10.80023 -10.69018 -10.26556 -10.18285 -9.98884 -9.75851 -9.73849 -9.63985 -9.23538 -8.82121 -8.58363 -8.53733 -6.84159 -5.71168 -2.98567 0.52218 1.03348 1.77523 2.23218 2.52590 2.96195 3.46563 3.52077 3.52913 3.54418 3.89137 4.01406 4.28548 4.38292 4.48996 4.64460 4.68740 4.74799 4.84000 4.94019 5.09159 5.12105 5.17866 5.24437 5.33339 5.35665 5.43565 5.49375 5.60858 5.74055 5.82696 5.94503 5.97059 5.98786 6.13444 6.18020 6.23232 6.32219 6.44204 6.51187 6.56483 6.64993 6.77875 6.81733 6.98331 7.02705 7.20282 7.28338 7.65263 7.75733 8.10548 8.48327 9.59419 10.18810 10.53711 11.52084 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.018241 B = 0.002265 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.670483 B =12358.359735 C =12836.994197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.606 5.606 3 C 0.129 3.871 4 C -0.086 4.086 5 C -0.120 4.120 6 C -0.136 4.136 7 C 0.166 3.834 8 N -0.728 5.728 9 C -0.234 4.234 10 H 0.070 0.930 11 C -0.016 4.016 12 N -0.934 5.934 13 Si 0.906 3.094 14 H -0.281 1.281 15 H -0.292 1.292 16 H -0.292 1.292 17 C 0.497 3.503 18 O -0.513 6.513 19 C 0.126 3.874 20 N -0.376 5.376 21 N -0.224 5.224 22 C 0.084 3.916 23 C -0.227 4.227 24 C 0.007 3.993 25 C -0.221 4.221 26 C 0.168 3.832 27 N -0.503 5.503 28 C 0.325 3.675 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.036 0.964 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.385 0.615 43 H 0.254 0.746 44 H 0.122 0.878 45 H 0.122 0.878 46 H 0.202 0.798 47 H 0.140 0.860 48 H 0.140 0.860 49 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.106 -23.580 17.386 30.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.340 5.340 3 C 0.007 3.993 4 C -0.087 4.087 5 C -0.178 4.178 6 C -0.193 4.193 7 C 0.037 3.963 8 N -0.373 5.373 9 C -0.366 4.366 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.220 1.220 17 C 0.283 3.717 18 O -0.387 6.387 19 C 0.001 3.999 20 N -0.165 5.165 21 N -0.035 5.035 22 C -0.115 4.115 23 C -0.237 4.237 24 C -0.022 4.022 25 C -0.242 4.242 26 C -0.001 4.001 27 N -0.217 5.217 28 C 0.086 3.914 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.035 0.965 41 H 0.036 0.964 42 H 0.220 0.780 43 H 0.063 0.937 44 H 0.140 0.860 45 H 0.140 0.860 46 H 0.219 0.781 47 H 0.157 0.843 48 H 0.158 0.842 49 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.627 -21.951 16.618 28.852 hybrid contribution 1.242 -0.144 -0.177 1.263 sum -7.385 -22.095 16.441 28.514 Atomic orbital electron populations 1.22028 0.79647 1.03940 1.01928 1.47726 1.06823 1.05980 1.73496 1.21572 0.97335 0.83213 0.97220 1.21110 0.96460 0.96979 0.94146 1.21683 0.99158 0.96148 1.00785 1.21887 0.95744 0.99795 1.01870 1.20578 0.95670 0.91156 0.88868 1.42396 1.68132 1.25775 1.00970 1.19285 1.27493 0.98064 0.91745 0.91236 1.24722 1.01871 0.99001 0.95589 1.69667 1.51760 1.38854 0.98079 0.86121 0.79193 0.83229 0.77703 1.20616 1.21947 1.21959 1.20662 0.88592 0.85247 0.77244 1.90774 1.13413 1.86703 1.47844 1.21487 0.89649 0.82522 1.06285 1.47588 1.39628 1.28968 1.00364 1.76790 1.11488 1.08223 1.06959 1.25068 0.97162 0.96526 0.92708 1.20512 1.05627 1.02845 0.94764 1.20776 0.94111 0.95510 0.91788 1.21631 1.03748 1.02291 0.96578 1.22721 0.89909 0.89117 0.98333 1.66731 1.26974 1.28917 0.99072 1.18923 0.92946 0.91513 0.87994 0.92356 0.89631 0.91405 0.90427 0.89903 0.94471 0.92184 0.92756 0.93193 0.91429 0.93627 0.96472 0.96368 0.78007 0.93652 0.86049 0.86025 0.78121 0.84264 0.84196 0.81890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.54 9.15 59.85 0.55 1.08 16 2 N -0.61 -7.39 2.40 -181.57 -0.44 -7.82 16 3 C 0.13 1.85 4.60 -4.04 -0.02 1.83 16 4 C -0.09 -1.47 0.60 -154.51 -0.09 -1.57 16 5 C -0.12 -2.33 6.97 37.16 0.26 -2.07 16 6 C -0.14 -2.16 7.05 37.16 0.26 -1.90 16 7 C 0.17 3.50 5.15 -4.04 -0.02 3.48 16 8 N -0.73 -18.99 5.00 -59.91 -0.30 -19.29 16 9 C -0.23 -6.77 9.99 -15.06 -0.15 -6.92 16 10 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 11 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 12 N -0.93 -28.96 13.06 55.49 0.72 -28.23 16 13 Si 0.91 23.04 29.55 -169.99 -5.02 18.02 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 16 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 17 C 0.50 7.04 6.15 -10.98 -0.07 6.97 16 18 O -0.51 -9.59 14.20 5.55 0.08 -9.51 16 19 C 0.13 1.40 5.44 -5.20 -0.03 1.37 16 20 N -0.38 -5.03 3.13 -61.61 -0.19 -5.22 16 21 N -0.22 -2.99 12.40 31.85 0.39 -2.59 16 22 C 0.08 0.88 12.29 -15.18 -0.19 0.70 16 23 C -0.23 -2.51 6.38 -105.18 -0.67 -3.18 16 24 C 0.01 0.05 10.18 -39.37 -0.40 -0.35 16 25 C -0.22 -1.54 10.04 -39.82 -0.40 -1.94 16 26 C 0.17 1.45 11.15 -17.48 -0.19 1.25 16 27 N -0.50 -6.13 10.40 -12.34 -0.13 -6.26 16 28 C 0.32 4.27 7.97 -156.11 -1.24 3.02 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.68 6.05 -51.93 -0.31 0.37 16 31 H 0.07 0.40 6.43 -51.93 -0.33 0.07 16 32 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 33 H 0.08 1.35 7.42 -51.93 -0.39 0.96 16 34 H 0.04 0.68 6.15 -51.93 -0.32 0.36 16 35 H 0.06 1.30 6.86 -51.93 -0.36 0.94 16 36 H 0.05 1.14 7.73 -51.93 -0.40 0.74 16 37 H 0.05 0.73 8.08 -51.93 -0.42 0.31 16 38 H 0.07 1.29 6.86 -51.93 -0.36 0.94 16 39 H 0.04 0.61 5.99 -51.93 -0.31 0.30 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.38 10.52 5.36 -40.82 -0.22 10.30 16 43 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.12 1.06 8.11 -51.93 -0.42 0.64 16 45 H 0.12 1.08 7.40 -51.93 -0.38 0.69 16 46 H 0.20 1.22 8.06 -52.49 -0.42 0.80 16 47 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 48 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 49 H 0.16 0.85 8.06 -52.49 -0.42 0.42 16 LS Contribution 393.37 15.07 5.93 5.93 Total: -1.00 -38.45 393.37 -8.60 -47.06 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -7.15 Total: 6.72 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -2.50 Total: 1.21 kcal Atomic # 7 Polarization: -69.48 SS G_CDS: 0.06 Total: -69.42 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.08 Total: -9.51 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -38.45 -8.60 -47.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717455738.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.702 kcal (2) G-P(sol) polarization free energy of solvation -38.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds